Wall clock time and date at job start Tue Mar 31 2020 01:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 C 1.50689 * 109.47330 * 120.00170 * 2 1 3 5 5 H 1.08008 * 119.99924 * 120.00215 * 4 2 1 6 6 C 1.37874 * 120.00601 * 300.00213 * 4 2 1 7 7 N 1.31513 * 120.00567 * 180.02562 * 6 4 2 8 8 Si 1.86807 * 119.99662 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.46966 * 90.00236 * 8 6 4 10 10 H 1.48497 * 109.47213 * 210.00302 * 8 6 4 11 11 H 1.48501 * 109.47155 * 330.00517 * 8 6 4 12 12 N 1.46504 * 109.46941 * 240.00615 * 2 1 3 13 13 C 1.34778 * 120.00067 * 84.99646 * 12 2 1 14 14 O 1.21707 * 120.00181 * 0.02562 * 13 12 2 15 15 C 1.46374 * 119.99683 * 180.02562 * 13 12 2 16 16 C 1.35253 * 119.99718 * 186.49492 * 15 13 12 17 17 C 1.46329 * 120.00048 * 9.07675 * 16 15 13 18 18 C 1.38085 * 125.82591 * 217.56722 * 17 16 15 19 19 C 1.39803 * 106.84077 * 179.84583 * 18 17 16 20 20 C 1.37726 * 106.89578 * 0.41653 * 19 18 17 21 21 C 1.47004 * 125.77055 * 179.74395 * 20 19 18 22 22 N 1.34780 * 120.00019 * 180.02562 * 21 20 19 23 23 O 1.21657 * 119.99863 * 0.02562 * 21 20 19 24 24 O 1.34582 * 125.82251 * 37.87793 * 17 16 15 25 25 H 1.09000 * 109.46837 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46934 * 59.99430 * 1 2 3 27 27 H 1.09003 * 109.46528 * 299.99624 * 1 2 3 28 28 H 0.96998 * 119.99877 * 179.97438 * 7 6 4 29 29 H 0.96995 * 119.99962 * 264.99666 * 12 2 1 30 30 H 1.07995 * 120.00307 * 6.49323 * 15 13 12 31 31 H 1.08003 * 119.99654 * 189.07416 * 16 15 13 32 32 H 1.08001 * 126.57974 * 359.97438 * 18 17 16 33 33 H 1.08000 * 126.55243 * 180.12835 * 19 18 17 34 34 H 0.97003 * 119.99926 * 359.97438 * 22 21 20 35 35 H 0.96996 * 119.99895 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 2.1382 -0.8592 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8019 0.8743 2.6995 10 1 0.9773 1.9951 3.9071 11 1 0.8491 2.1772 1.4924 12 7 2.0184 -0.6905 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8580 1.1629 -2.4117 15 6 2.6343 -0.7082 -3.5525 16 6 2.8885 -0.0078 -4.6813 17 6 2.8691 1.4551 -4.6547 18 6 2.3927 2.2756 -5.6580 19 6 2.5611 3.5921 -5.2188 20 6 3.1411 3.5269 -3.9714 21 6 3.5055 4.6773 -3.1319 22 7 4.0704 4.4785 -1.9245 23 8 3.2970 5.8089 -3.5270 24 8 3.3180 2.2307 -3.6505 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 0.5138 0.8901 28 1 1.9042 -0.5276 4.4374 29 1 2.2491 -1.6316 -1.1528 30 1 2.7910 -1.7765 -3.5332 31 1 3.1058 -0.5283 -5.6024 32 1 1.9691 1.9606 -6.6002 33 1 2.2924 4.4890 -5.7571 34 1 4.2363 3.5762 -1.6093 35 1 4.3111 5.2376 -1.3708 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824688775.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:38 Heat of formation + Delta-G solvation = -62.875163 kcal Electronic energy + Delta-G solvation = -21485.384029 eV Core-core repulsion = 18063.780210 eV Total energy + Delta-G solvation = -3421.603819 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -43.40895 -40.59473 -40.23260 -36.92952 -35.08510 -34.53865 -34.38107 -33.79647 -31.85972 -29.90749 -27.24379 -25.86991 -23.92018 -22.67233 -22.08872 -21.38467 -20.66829 -19.54126 -18.86619 -18.02082 -17.96118 -17.45723 -17.16102 -16.47466 -15.81035 -15.66506 -15.51427 -15.19143 -14.92184 -14.84855 -14.30181 -14.12766 -14.03538 -13.86047 -13.56090 -13.19141 -13.12185 -12.80123 -12.16784 -11.70351 -11.64309 -11.28402 -11.06890 -10.96779 -10.88664 -10.83753 -10.70499 -9.81230 -9.07181 -8.39337 -6.44320 -0.45171 0.49816 1.24768 1.33213 1.41624 1.56539 1.77762 2.09603 2.23561 2.47292 2.52651 2.60941 2.97612 3.58040 3.91222 3.97014 4.07821 4.44667 4.51990 4.54566 4.64773 4.70671 4.76340 4.89172 4.97365 5.04503 5.22256 5.34249 5.42957 5.53168 5.61454 5.67753 5.91520 6.15025 6.26448 6.58291 6.93076 7.01643 7.19559 7.50963 8.75865 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017938 B = 0.005697 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.592892 B = 4913.573264 C = 5964.086319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.245 3.755 3 H 0.023 0.977 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.032 3.968 7 N -0.933 5.933 8 Si 0.936 3.064 9 H -0.264 1.264 10 H -0.293 1.293 11 H -0.265 1.265 12 N -0.694 5.694 13 C 0.512 3.488 14 O -0.576 6.576 15 C -0.179 4.179 16 C -0.010 4.010 17 C 0.041 3.959 18 C -0.199 4.199 19 C -0.130 4.130 20 C -0.109 4.109 21 C 0.607 3.393 22 N -0.827 5.827 23 O -0.567 6.567 24 O -0.135 6.135 25 H 0.065 0.935 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.270 0.730 29 H 0.408 0.592 30 H 0.184 0.816 31 H 0.215 0.785 32 H 0.194 0.806 33 H 0.167 0.833 34 H 0.413 0.587 35 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.396 0.459 -18.500 18.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.140 3.860 3 H 0.040 0.960 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.168 4.168 7 N -0.572 5.572 8 Si 0.764 3.236 9 H -0.190 1.190 10 H -0.221 1.221 11 H -0.189 1.189 12 N -0.343 5.343 13 C 0.302 3.698 14 O -0.458 6.458 15 C -0.199 4.199 16 C -0.029 4.029 17 C -0.013 4.013 18 C -0.217 4.217 19 C -0.151 4.151 20 C -0.163 4.163 21 C 0.393 3.607 22 N -0.389 5.389 23 O -0.449 6.449 24 O -0.028 6.028 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.244 0.756 30 H 0.201 0.799 31 H 0.232 0.768 32 H 0.211 0.789 33 H 0.184 0.816 34 H 0.243 0.757 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.142 1.805 -18.375 18.587 hybrid contribution -0.333 0.258 1.335 1.400 sum 1.809 2.063 -17.039 17.259 Atomic orbital electron populations 1.22342 0.98278 1.01543 0.99097 1.18682 0.90791 0.93186 0.83352 0.95958 1.21263 1.32125 1.13542 0.89827 0.92269 1.25489 0.96761 0.99060 0.95488 1.69965 1.46696 1.41862 0.98637 0.86055 0.79768 0.80685 0.77068 1.19046 1.22060 1.18944 1.45946 1.64924 1.14393 1.09007 1.19279 0.78766 0.86907 0.84891 1.90811 1.52635 1.17052 1.85296 1.23597 1.01926 1.03004 0.91395 1.22224 0.94968 0.85507 1.00213 1.21904 1.00386 0.93337 0.85637 1.22445 1.06604 0.90725 1.01942 1.22265 0.99219 0.99923 0.93659 1.22315 1.12682 0.82608 0.98692 1.16803 0.76540 0.85925 0.81403 1.43620 1.63018 1.13920 1.18381 1.90835 1.57254 1.22873 1.73959 1.84238 1.63057 1.15309 1.40241 0.91637 0.93904 0.94485 0.92096 0.75622 0.79913 0.76801 0.78927 0.81581 0.75687 0.75049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.60 8.97 71.98 0.65 -5.96 16 2 C 0.25 11.16 2.15 44.24 0.10 11.26 16 3 H 0.02 1.15 6.63 -2.39 -0.02 1.13 16 4 C -0.53 -27.89 9.31 25.60 0.24 -27.65 16 5 H 0.06 3.30 7.98 -2.91 -0.02 3.28 16 6 C 0.03 1.76 5.45 84.65 0.46 2.22 16 7 N -0.93 -54.87 13.96 21.45 0.30 -54.58 16 8 Si 0.94 44.39 24.37 68.60 1.67 46.06 16 9 H -0.26 -11.94 6.87 99.48 0.68 -11.26 16 10 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 11 H -0.26 -12.52 6.53 99.48 0.65 -11.87 16 12 N -0.69 -25.06 5.06 -450.37 -2.28 -27.34 16 13 C 0.51 17.07 7.51 86.36 0.65 17.71 16 14 O -0.58 -23.48 12.15 19.34 0.23 -23.25 16 15 C -0.18 -3.65 10.08 23.70 0.24 -3.41 16 16 C -0.01 -0.17 10.15 23.69 0.24 0.07 16 17 C 0.04 1.04 5.61 24.34 0.14 1.17 16 18 C -0.20 -4.42 10.88 22.61 0.25 -4.17 16 19 C -0.13 -3.57 10.64 22.53 0.24 -3.33 16 20 C -0.11 -3.54 7.16 24.45 0.18 -3.36 16 21 C 0.61 20.09 8.07 86.54 0.70 20.79 16 22 N -0.83 -22.53 8.87 -176.16 -1.56 -24.09 16 23 O -0.57 -21.29 17.70 -4.21 -0.07 -21.36 16 24 O -0.13 -4.36 7.48 14.58 0.11 -4.26 16 25 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 26 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 27 H 0.04 1.64 3.27 -2.39 -0.01 1.63 16 28 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 29 H 0.41 12.54 8.52 -92.71 -0.79 11.75 16 30 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 31 H 0.22 1.17 8.06 -2.91 -0.02 1.15 16 32 H 0.19 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.17 4.04 8.06 -2.91 -0.02 4.01 16 34 H 0.41 11.10 8.58 -92.71 -0.80 10.31 16 35 H 0.42 9.33 8.93 -92.71 -0.83 8.51 16 Total: -1.00 -75.81 306.81 1.14 -74.68 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: -1.32 Total: 28.79 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 4.06 Total: 5.34 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -3.54 Total: -106.00 kcal Atomic # 8 Polarization: -49.14 SS G_CDS: 0.27 Total: -48.87 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.67 Total: 46.06 kcal Total: -75.81 1.14 -74.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824688775.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.800 kcal (2) G-P(sol) polarization free energy of solvation -75.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds