Wall clock time and date at job start Tue Mar 31 2020 01:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.47174 * 2 1 4 4 C 1.50700 * 109.46576 * 240.00361 * 2 1 3 5 5 H 1.08004 * 120.00329 * 274.56369 * 4 2 1 6 6 C 1.37882 * 120.00063 * 94.56240 * 4 2 1 7 7 N 1.31519 * 119.99909 * 184.23784 * 6 4 2 8 8 Si 1.86800 * 119.99920 * 4.24273 * 6 4 2 9 9 H 1.48492 * 109.47136 * 94.09686 * 8 6 4 10 10 H 1.48499 * 109.46875 * 214.09904 * 8 6 4 11 11 H 1.48498 * 109.46927 * 334.09621 * 8 6 4 12 12 N 1.46493 * 109.47310 * 120.00890 * 2 1 3 13 13 C 1.34780 * 119.99472 * 274.99300 * 12 2 1 14 14 O 1.21700 * 120.00189 * 359.73008 * 13 12 2 15 15 C 1.46381 * 119.99796 * 179.97438 * 13 12 2 16 16 C 1.35245 * 119.99774 * 186.50894 * 15 13 12 17 17 C 1.46334 * 120.00440 * 8.62417 * 16 15 13 18 18 C 1.38091 * 125.82281 * 221.31237 * 17 16 15 19 19 C 1.39796 * 106.83579 * 179.90122 * 18 17 16 20 20 C 1.37728 * 106.89791 * 0.34969 * 19 18 17 21 21 C 1.47005 * 125.76863 * 179.77329 * 20 19 18 22 22 N 1.34781 * 119.99744 * 180.02562 * 21 20 19 23 23 O 1.21651 * 120.00519 * 0.03195 * 21 20 19 24 24 O 1.34572 * 125.82125 * 41.61131 * 17 16 15 25 25 H 1.09003 * 109.46443 * 295.08126 * 1 2 3 26 26 H 1.08999 * 109.47587 * 55.08259 * 1 2 3 27 27 H 1.09001 * 109.47488 * 175.08701 * 1 2 3 28 28 H 0.96993 * 119.99832 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00895 * 94.99217 * 12 2 1 30 30 H 1.08001 * 119.99681 * 6.51744 * 15 13 12 31 31 H 1.08003 * 119.99681 * 188.62471 * 16 15 13 32 32 H 1.07997 * 126.58245 * 0.02797 * 18 17 16 33 33 H 1.08001 * 126.55447 * 180.09208 * 19 18 17 34 34 H 0.97001 * 120.00247 * 359.97438 * 22 21 20 35 35 H 0.97003 * 119.99983 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.1420 -1.7848 -1.2269 6 6 2.3515 0.0114 -2.3612 7 7 2.7099 -0.6141 -3.4612 8 14 2.2752 1.8776 -2.3305 9 1 3.6189 2.4227 -2.0105 10 1 1.8421 2.3771 -3.6601 11 1 1.3039 2.3162 -1.2964 12 7 2.0184 -0.6908 1.1960 13 6 2.1472 -0.0184 2.3570 14 8 1.8625 1.1636 2.4105 15 6 2.6347 -0.7087 3.5522 16 6 2.6398 -0.0725 4.7457 17 6 1.9881 1.2305 4.8832 18 6 2.4810 2.3103 5.5887 19 6 1.5469 3.3417 5.4552 20 6 0.5176 2.8521 4.6821 21 6 -0.6890 3.5936 4.2881 22 7 -1.6272 2.9977 3.5257 23 8 -0.8406 4.7452 4.6499 24 8 0.8034 1.5788 4.3483 25 1 -0.3632 0.4357 0.9308 26 1 -0.3634 0.5882 -0.8426 27 1 -0.3634 -1.0239 -0.0880 28 1 2.9349 -0.1064 -4.2564 29 1 2.2490 -1.6319 1.1524 30 1 2.9903 -1.7260 3.4810 31 1 3.1251 -0.5261 5.5973 32 1 3.4108 2.3510 6.1365 33 1 1.6167 4.3319 5.8808 34 1 -1.5062 2.0797 3.2368 35 1 -2.4233 3.4872 3.2653 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824688778.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:44 Heat of formation + Delta-G solvation = -44.144487 kcal Electronic energy + Delta-G solvation = -21495.817378 eV Core-core repulsion = 18075.025782 eV Total energy + Delta-G solvation = -3420.791596 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -42.32516 -39.22689 -38.94074 -35.15571 -33.95776 -33.45396 -32.70899 -32.41194 -30.12182 -28.72182 -25.40290 -24.62915 -22.50856 -21.60827 -20.56207 -19.94343 -19.41739 -18.36488 -17.50866 -16.86887 -16.53735 -15.99452 -15.67529 -14.88462 -14.37772 -14.30534 -14.17792 -13.92968 -13.67516 -13.02077 -12.96895 -12.81867 -12.59990 -12.39630 -12.17877 -11.55363 -11.16136 -10.86490 -10.67650 -10.46109 -10.04400 -9.89722 -9.82115 -9.74545 -9.33968 -9.24027 -8.75917 -8.21072 -7.95368 -6.28691 -4.32773 0.62394 1.56168 2.58325 2.82882 3.21268 3.26652 3.30884 3.38110 3.57682 3.75505 3.95572 4.27685 4.56698 4.96211 4.98451 5.06155 5.20851 5.34524 5.69811 5.74303 5.84856 5.98266 6.14289 6.29481 6.43367 6.47936 6.60549 6.63404 6.87348 6.96949 7.12519 7.31942 7.35532 7.48409 8.07347 8.12500 8.49773 8.71400 8.89406 9.33309 10.82974 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018547 B = 0.005562 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.344904 B = 5033.400460 C = 5831.748580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.228 3.772 3 H 0.053 0.947 4 C -0.532 4.532 5 H 0.079 0.921 6 C 0.082 3.918 7 N -0.888 5.888 8 Si 0.872 3.128 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.258 1.258 12 N -0.693 5.693 13 C 0.516 3.484 14 O -0.542 6.542 15 C -0.163 4.163 16 C -0.039 4.039 17 C 0.069 3.931 18 C -0.211 4.211 19 C -0.123 4.123 20 C -0.079 4.079 21 C 0.614 3.386 22 N -0.841 5.841 23 O -0.535 6.535 24 O -0.119 6.119 25 H 0.027 0.973 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.268 0.732 29 H 0.394 0.606 30 H 0.141 0.859 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.409 0.591 35 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.770 -0.040 17.022 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.126 3.874 3 H 0.071 0.929 4 C -0.570 4.570 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.524 5.524 8 Si 0.699 3.301 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.182 1.182 12 N -0.341 5.341 13 C 0.303 3.697 14 O -0.422 6.422 15 C -0.184 4.184 16 C -0.059 4.059 17 C 0.016 3.984 18 C -0.230 4.230 19 C -0.144 4.144 20 C -0.133 4.133 21 C 0.400 3.600 22 N -0.403 5.403 23 O -0.413 6.413 24 O -0.012 6.012 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.227 0.773 30 H 0.158 0.842 31 H 0.175 0.825 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.239 0.761 35 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -3.079 1.347 16.906 17.237 hybrid contribution 0.153 0.180 -0.541 0.590 sum -2.926 1.527 16.365 16.695 Atomic orbital electron populations 1.22195 0.98619 1.00490 0.99062 1.19202 0.90899 0.94590 0.82695 0.92887 1.21008 1.45422 0.95661 0.94866 0.90343 1.24935 0.93572 0.98586 0.95188 1.69882 1.44557 1.36174 1.01813 0.86911 0.79560 0.85895 0.77781 1.20042 1.21005 1.18179 1.46579 1.63908 1.13738 1.09862 1.18450 0.79491 0.87470 0.84308 1.90807 1.51122 1.15458 1.84862 1.23662 1.01012 1.00408 0.93299 1.21484 0.96696 0.89642 0.98065 1.20983 0.86458 0.95749 0.95225 1.21985 1.02126 0.92765 1.06131 1.21906 0.92628 1.00498 0.99353 1.22134 0.99588 0.84560 1.06979 1.16611 0.80738 0.84962 0.77724 1.43682 1.23538 1.18850 1.54274 1.90872 1.77623 1.16194 1.56659 1.84190 1.33592 1.26502 1.56945 0.95342 0.93025 0.93447 0.92219 0.77274 0.84165 0.82453 0.82735 0.82620 0.76114 0.76240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.47 37.16 0.35 -2.66 16 2 C 0.23 5.23 2.17 -69.08 -0.15 5.08 16 3 H 0.05 1.35 4.57 -51.93 -0.24 1.11 16 4 C -0.53 -13.90 9.05 -34.44 -0.31 -14.21 16 5 H 0.08 2.16 8.06 -52.48 -0.42 1.73 16 6 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 7 N -0.89 -25.78 13.96 55.43 0.77 -25.01 16 8 Si 0.87 21.38 27.23 -169.99 -4.63 16.75 16 9 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.26 -6.25 6.43 56.52 0.36 -5.89 16 12 N -0.69 -13.10 5.06 -56.35 -0.29 -13.39 16 13 C 0.52 9.24 7.52 -12.98 -0.10 9.14 16 14 O -0.54 -11.50 12.30 -19.27 -0.24 -11.73 16 15 C -0.16 -2.03 10.08 -37.37 -0.38 -2.40 16 16 C -0.04 -0.44 10.15 -37.39 -0.38 -0.81 16 17 C 0.07 0.99 5.47 -36.38 -0.20 0.79 16 18 C -0.21 -2.75 10.88 -39.05 -0.42 -3.18 16 19 C -0.12 -1.79 10.64 -39.19 -0.42 -2.20 16 20 C -0.08 -1.26 7.16 -36.22 -0.26 -1.52 16 21 C 0.61 9.68 8.07 -12.71 -0.10 9.57 16 22 N -0.84 -10.37 8.87 30.34 0.27 -10.10 16 23 O -0.53 -9.66 17.70 5.23 0.09 -9.56 16 24 O -0.12 -1.94 7.77 -20.57 -0.16 -2.10 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 1.09 8.10 -51.93 -0.42 0.67 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.39 6.44 8.57 -40.82 -0.35 6.09 16 30 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.16 1.04 8.06 -52.48 -0.42 0.61 16 32 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 34 H 0.41 4.78 8.58 -40.82 -0.35 4.43 16 35 H 0.41 4.04 8.93 -40.82 -0.36 3.67 16 LS Contribution 313.29 15.07 4.72 4.72 Total: -1.00 -34.21 313.29 -5.77 -39.98 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -3.86 Total: 10.69 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -2.46 Total: -0.26 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.76 Total: -48.50 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.30 Total: -23.39 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.63 Total: 16.75 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.21 -5.77 -39.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824688778.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.160 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds