Wall clock time and date at job start Tue Mar 31 2020 01:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.47174 * 2 1 4 4 C 1.50700 * 109.46576 * 240.00361 * 2 1 3 5 5 H 1.08004 * 120.00329 * 274.56369 * 4 2 1 6 6 C 1.37882 * 120.00063 * 94.56240 * 4 2 1 7 7 N 1.31519 * 119.99909 * 184.23784 * 6 4 2 8 8 Si 1.86800 * 119.99920 * 4.24273 * 6 4 2 9 9 H 1.48492 * 109.47136 * 94.09686 * 8 6 4 10 10 H 1.48499 * 109.46875 * 214.09904 * 8 6 4 11 11 H 1.48498 * 109.46927 * 334.09621 * 8 6 4 12 12 N 1.46493 * 109.47310 * 120.00890 * 2 1 3 13 13 C 1.34780 * 119.99472 * 274.99300 * 12 2 1 14 14 O 1.21700 * 120.00189 * 359.73008 * 13 12 2 15 15 C 1.46381 * 119.99796 * 179.97438 * 13 12 2 16 16 C 1.35245 * 119.99774 * 186.50894 * 15 13 12 17 17 C 1.46334 * 120.00440 * 8.62417 * 16 15 13 18 18 C 1.38091 * 125.82281 * 221.31237 * 17 16 15 19 19 C 1.39796 * 106.83579 * 179.90122 * 18 17 16 20 20 C 1.37728 * 106.89791 * 0.34969 * 19 18 17 21 21 C 1.47005 * 125.76863 * 179.77329 * 20 19 18 22 22 N 1.34781 * 119.99744 * 180.02562 * 21 20 19 23 23 O 1.21651 * 120.00519 * 0.03195 * 21 20 19 24 24 O 1.34572 * 125.82125 * 41.61131 * 17 16 15 25 25 H 1.09003 * 109.46443 * 295.08126 * 1 2 3 26 26 H 1.08999 * 109.47587 * 55.08259 * 1 2 3 27 27 H 1.09001 * 109.47488 * 175.08701 * 1 2 3 28 28 H 0.96993 * 119.99832 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00895 * 94.99217 * 12 2 1 30 30 H 1.08001 * 119.99681 * 6.51744 * 15 13 12 31 31 H 1.08003 * 119.99681 * 188.62471 * 16 15 13 32 32 H 1.07997 * 126.58245 * 0.02797 * 18 17 16 33 33 H 1.08001 * 126.55447 * 180.09208 * 19 18 17 34 34 H 0.97001 * 120.00247 * 359.97438 * 22 21 20 35 35 H 0.97003 * 119.99983 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.1420 -1.7848 -1.2269 6 6 2.3515 0.0114 -2.3612 7 7 2.7099 -0.6141 -3.4612 8 14 2.2752 1.8776 -2.3305 9 1 3.6189 2.4227 -2.0105 10 1 1.8421 2.3771 -3.6601 11 1 1.3039 2.3162 -1.2964 12 7 2.0184 -0.6908 1.1960 13 6 2.1472 -0.0184 2.3570 14 8 1.8625 1.1636 2.4105 15 6 2.6347 -0.7087 3.5522 16 6 2.6398 -0.0725 4.7457 17 6 1.9881 1.2305 4.8832 18 6 2.4810 2.3103 5.5887 19 6 1.5469 3.3417 5.4552 20 6 0.5176 2.8521 4.6821 21 6 -0.6890 3.5936 4.2881 22 7 -1.6272 2.9977 3.5257 23 8 -0.8406 4.7452 4.6499 24 8 0.8034 1.5788 4.3483 25 1 -0.3632 0.4357 0.9308 26 1 -0.3634 0.5882 -0.8426 27 1 -0.3634 -1.0239 -0.0880 28 1 2.9349 -0.1064 -4.2564 29 1 2.2490 -1.6319 1.1524 30 1 2.9903 -1.7260 3.4810 31 1 3.1251 -0.5261 5.5973 32 1 3.4108 2.3510 6.1365 33 1 1.6167 4.3319 5.8808 34 1 -1.5062 2.0797 3.2368 35 1 -2.4233 3.4872 3.2653 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824688778.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:42 Heat of formation + Delta-G solvation = -70.673373 kcal Electronic energy + Delta-G solvation = -21496.967757 eV Core-core repulsion = 18075.025782 eV Total energy + Delta-G solvation = -3421.941975 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.40846 -40.56888 -40.22516 -36.80748 -35.08157 -34.53717 -34.36617 -33.80043 -31.73993 -29.87571 -27.33534 -25.81551 -23.80214 -22.67873 -21.96053 -21.36819 -20.72278 -19.58156 -18.99256 -18.03437 -17.96518 -17.39864 -17.10663 -16.32072 -15.71869 -15.61301 -15.54334 -15.22654 -14.94247 -14.62362 -14.34590 -14.08598 -13.99639 -13.86058 -13.31499 -13.11719 -13.04736 -12.78880 -12.45594 -11.88829 -11.69632 -11.20708 -11.04671 -10.96588 -10.87858 -10.81235 -10.70643 -9.75352 -9.07500 -8.40818 -6.45925 -0.42045 0.48331 1.24585 1.31286 1.41215 1.54297 1.76205 2.10217 2.23949 2.46127 2.55741 2.59670 3.04799 3.58874 3.92710 3.97963 4.10000 4.48507 4.52022 4.64811 4.73309 4.76899 4.84279 4.89078 5.03068 5.10283 5.25107 5.38850 5.46133 5.52500 5.62905 5.78221 5.90856 6.13573 6.27031 6.60000 6.96390 7.03590 7.20596 7.52551 8.74323 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018547 B = 0.005562 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.344904 B = 5033.400460 C = 5831.748580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.233 3.767 3 H 0.029 0.971 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.035 3.965 7 N -0.930 5.930 8 Si 0.923 3.077 9 H -0.278 1.278 10 H -0.277 1.277 11 H -0.256 1.256 12 N -0.697 5.697 13 C 0.510 3.490 14 O -0.580 6.580 15 C -0.176 4.176 16 C -0.013 4.013 17 C 0.047 3.953 18 C -0.205 4.205 19 C -0.131 4.131 20 C -0.109 4.109 21 C 0.608 3.392 22 N -0.825 5.825 23 O -0.568 6.568 24 O -0.135 6.135 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.270 0.730 29 H 0.406 0.594 30 H 0.183 0.817 31 H 0.214 0.786 32 H 0.190 0.810 33 H 0.165 0.835 34 H 0.414 0.586 35 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.125 -0.730 19.199 19.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.129 3.871 3 H 0.047 0.953 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.166 4.166 7 N -0.569 5.569 8 Si 0.748 3.252 9 H -0.204 1.204 10 H -0.203 1.203 11 H -0.181 1.181 12 N -0.345 5.345 13 C 0.299 3.701 14 O -0.463 6.463 15 C -0.197 4.197 16 C -0.031 4.031 17 C -0.007 4.007 18 C -0.223 4.223 19 C -0.151 4.151 20 C -0.163 4.163 21 C 0.394 3.606 22 N -0.387 5.387 23 O -0.450 6.450 24 O -0.029 6.029 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.242 0.758 30 H 0.200 0.800 31 H 0.231 0.769 32 H 0.207 0.793 33 H 0.183 0.817 34 H 0.244 0.756 35 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.452 0.618 19.091 19.258 hybrid contribution -0.039 0.354 -1.115 1.171 sum -2.492 0.971 17.976 18.174 Atomic orbital electron populations 1.22072 0.97069 1.01124 0.99386 1.18890 0.92010 0.93118 0.83096 0.95340 1.21231 1.44027 0.94903 0.96005 0.92347 1.25554 0.93957 1.01924 0.95152 1.69974 1.46790 1.37541 1.02569 0.86107 0.79195 0.81992 0.77890 1.20424 1.20290 1.18060 1.46285 1.64610 1.14301 1.09321 1.19291 0.78330 0.87210 0.85236 1.90799 1.52589 1.17302 1.85569 1.23638 1.02697 1.02196 0.91140 1.22197 0.94296 0.87434 0.99221 1.21847 0.86242 0.97555 0.95015 1.22415 1.02759 0.91618 1.05535 1.22253 0.92676 1.01393 0.98791 1.22293 1.00414 0.85102 1.08483 1.16759 0.81257 0.84705 0.77865 1.43562 1.23241 1.18953 1.52980 1.90840 1.78472 1.17446 1.58220 1.84161 1.34720 1.26465 1.57517 0.94054 0.93859 0.92423 0.92097 0.75820 0.80004 0.76946 0.79298 0.81726 0.75574 0.74950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.60 9.47 71.98 0.68 -4.92 16 2 C 0.23 10.54 2.17 44.25 0.10 10.63 16 3 H 0.03 1.45 4.57 -2.39 -0.01 1.44 16 4 C -0.52 -27.46 9.05 25.60 0.23 -27.23 16 5 H 0.06 3.25 8.06 -2.91 -0.02 3.22 16 6 C 0.03 1.91 5.47 84.66 0.46 2.38 16 7 N -0.93 -54.77 13.96 21.45 0.30 -54.47 16 8 Si 0.92 44.52 27.23 68.60 1.87 46.39 16 9 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.26 -12.20 6.43 99.48 0.64 -11.56 16 12 N -0.70 -25.35 5.06 -450.39 -2.28 -27.63 16 13 C 0.51 17.24 7.52 86.36 0.65 17.89 16 14 O -0.58 -23.97 12.30 19.04 0.23 -23.74 16 15 C -0.18 -3.69 10.08 23.70 0.24 -3.45 16 16 C -0.01 -0.22 10.15 23.69 0.24 0.02 16 17 C 0.05 1.20 5.47 24.34 0.13 1.33 16 18 C -0.20 -4.74 10.88 22.61 0.25 -4.50 16 19 C -0.13 -3.63 10.64 22.53 0.24 -3.39 16 20 C -0.11 -3.46 7.16 24.45 0.18 -3.29 16 21 C 0.61 19.25 8.07 86.54 0.70 19.95 16 22 N -0.82 -20.11 8.87 -176.17 -1.56 -21.67 16 23 O -0.57 -20.81 17.70 -4.19 -0.07 -20.88 16 24 O -0.13 -4.21 7.77 14.39 0.11 -4.10 16 25 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.04 1.79 8.10 -2.39 -0.02 1.78 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 29 H 0.41 12.62 8.57 -92.71 -0.79 11.82 16 30 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 31 H 0.21 1.31 8.06 -2.91 -0.02 1.28 16 32 H 0.19 2.88 8.06 -2.91 -0.02 2.85 16 33 H 0.17 4.10 8.06 -2.91 -0.02 4.08 16 34 H 0.41 9.48 8.58 -92.71 -0.80 8.69 16 35 H 0.42 8.12 8.93 -92.71 -0.83 7.29 16 Total: -1.00 -76.06 313.29 1.37 -74.69 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -1.32 Total: 25.99 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 4.09 Total: 5.42 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -3.54 Total: -103.77 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: 0.27 Total: -48.72 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.87 Total: 46.39 kcal Total: -76.06 1.37 -74.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824688778.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.020 kcal (2) G-P(sol) polarization free energy of solvation -76.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds