Wall clock time and date at job start Tue Mar 31 2020 01:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.47204 * 120.00127 * 2 1 3 13 13 C 1.34775 * 120.00366 * 274.99782 * 12 2 1 14 14 O 1.21713 * 119.99593 * 0.02562 * 13 12 2 15 15 C 1.46370 * 120.00161 * 180.02562 * 13 12 2 16 16 C 1.35258 * 119.99845 * 180.02562 * 15 13 12 17 17 C 1.46329 * 119.99998 * 179.97438 * 16 15 13 18 18 C 1.38081 * 125.82256 * 179.71575 * 17 16 15 19 19 C 1.39801 * 106.83842 * 179.84633 * 18 17 16 20 20 C 1.37734 * 106.89619 * 0.41304 * 19 18 17 21 21 C 1.46995 * 125.76908 * 179.73869 * 20 19 18 22 22 N 1.34777 * 119.99897 * 180.02562 * 21 20 19 23 23 O 1.21654 * 120.00433 * 0.02845 * 21 20 19 24 24 O 1.34571 * 125.82130 * 0.02897 * 17 16 15 25 25 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 26 26 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 27 27 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 29 29 H 0.96998 * 120.00005 * 95.00592 * 12 2 1 30 30 H 1.07997 * 120.00367 * 0.02562 * 15 13 12 31 31 H 1.07997 * 119.99788 * 0.02562 * 16 15 13 32 32 H 1.07999 * 126.58100 * 359.97438 * 18 17 16 33 33 H 1.08000 * 126.55226 * 180.15654 * 19 18 17 34 34 H 0.96996 * 119.99865 * 0.02562 * 22 21 20 35 35 H 0.96996 * 120.00094 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8572 1.1625 2.4119 15 6 2.6356 -0.7083 3.5521 16 6 2.7643 -0.0337 4.7173 17 6 3.2521 -0.7235 5.9121 18 6 3.4343 -0.1537 7.1565 19 6 3.9070 -1.1640 7.9993 20 6 4.0045 -2.3075 7.2378 21 6 4.4663 -3.6196 7.7132 22 7 4.5161 -4.6648 6.8637 23 8 4.8034 -3.7621 8.8733 24 8 3.6052 -2.0201 5.9839 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.9026 -0.5282 -4.4376 29 1 2.2491 -1.6317 1.1525 30 1 2.8932 -1.7560 3.5034 31 1 2.5063 1.0139 4.7661 32 1 3.2456 0.8746 7.4274 33 1 4.1531 -1.0655 9.0463 34 1 4.2477 -4.5510 5.9386 35 1 4.8205 -5.5306 7.1774 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824688780.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:47 Heat of formation + Delta-G solvation = -44.709738 kcal Electronic energy + Delta-G solvation = -20125.134810 eV Core-core repulsion = 16704.318703 eV Total energy + Delta-G solvation = -3420.816107 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.88719 -39.53806 -39.18376 -35.27214 -34.37082 -33.75121 -33.29399 -32.44968 -30.30116 -29.09828 -25.36127 -24.98921 -22.75445 -21.94903 -20.95192 -20.17061 -19.51526 -18.70777 -17.50846 -17.27526 -16.71255 -16.41727 -15.94751 -15.27581 -14.78416 -14.71497 -14.56208 -14.23003 -13.45820 -13.42661 -13.41575 -13.00136 -12.74147 -12.32168 -12.24912 -11.87145 -11.38319 -10.86694 -10.86425 -10.75104 -10.26251 -10.23875 -10.17380 -9.80398 -9.37930 -9.29749 -8.81629 -8.44275 -8.17368 -6.25855 -4.29048 0.15658 1.30450 2.19360 2.39392 2.79090 3.10553 3.19819 3.32238 3.36025 3.66643 3.74208 4.27184 4.38519 4.51245 4.62604 4.97300 5.08972 5.22674 5.25636 5.36940 5.58542 5.74914 6.02949 6.11765 6.23823 6.25883 6.32039 6.49388 6.50932 6.79236 6.88831 7.11860 7.18964 7.44120 7.69939 8.06213 8.43081 8.68276 8.80086 9.34400 10.86252 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033627 B = 0.003033 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.473537 B = 9230.582159 C = 9868.935564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.235 3.765 3 H 0.051 0.949 4 C -0.537 4.537 5 H 0.081 0.919 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.261 1.261 11 H -0.294 1.294 12 N -0.690 5.690 13 C 0.529 3.471 14 O -0.555 6.555 15 C -0.156 4.156 16 C -0.034 4.034 17 C 0.052 3.948 18 C -0.194 4.194 19 C -0.112 4.112 20 C -0.087 4.087 21 C 0.612 3.388 22 N -0.843 5.843 23 O -0.525 6.525 24 O -0.154 6.154 25 H 0.036 0.964 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.268 0.732 29 H 0.397 0.603 30 H 0.131 0.869 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.164 0.836 34 H 0.409 0.591 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.385 -4.174 19.561 20.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.132 3.868 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.186 1.186 11 H -0.221 1.221 12 N -0.336 5.336 13 C 0.316 3.684 14 O -0.436 6.436 15 C -0.177 4.177 16 C -0.053 4.053 17 C 0.000 4.000 18 C -0.213 4.213 19 C -0.133 4.133 20 C -0.140 4.140 21 C 0.397 3.603 22 N -0.406 5.406 23 O -0.403 6.403 24 O -0.050 6.050 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.231 0.769 30 H 0.149 0.851 31 H 0.183 0.817 32 H 0.182 0.818 33 H 0.182 0.818 34 H 0.238 0.762 35 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.354 -3.505 19.856 20.300 hybrid contribution -0.487 -0.033 -0.614 0.785 sum 1.867 -3.538 19.242 19.653 Atomic orbital electron populations 1.22452 0.99119 1.00959 0.99439 1.19156 0.90261 0.94761 0.82650 0.93161 1.21030 1.33459 1.14529 0.88520 0.90145 1.24835 0.95468 0.96732 0.95498 1.69868 1.44782 1.40087 0.98082 0.86868 0.80515 0.83553 0.77519 1.20256 1.18610 1.22100 1.46146 1.63888 1.13892 1.09718 1.18186 0.79326 0.86996 0.83900 1.90787 1.51749 1.15672 1.85414 1.23438 0.99944 1.00819 0.93521 1.21544 0.96492 0.99598 0.87714 1.21397 1.01531 0.80899 0.96188 1.22232 1.05997 1.01381 0.91648 1.22108 0.99450 0.90594 1.01145 1.22304 1.11684 0.96863 0.83172 1.16558 0.77007 0.81671 0.85064 1.43703 1.69445 1.12800 1.14643 1.90920 1.49284 1.83157 1.16920 1.84033 1.63642 1.27279 1.30048 0.94456 0.93334 0.92743 0.92217 0.76884 0.85111 0.81722 0.81754 0.81827 0.76173 0.75849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 8.96 37.16 0.33 -3.17 16 2 C 0.24 5.44 2.15 -69.08 -0.15 5.29 16 3 H 0.05 1.28 6.63 -51.93 -0.34 0.94 16 4 C -0.54 -14.18 9.31 -34.44 -0.32 -14.50 16 5 H 0.08 2.22 7.98 -52.49 -0.42 1.80 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -25.97 13.96 55.43 0.77 -25.20 16 8 Si 0.89 21.33 24.37 -169.99 -4.14 17.18 16 9 H -0.28 -6.42 6.87 56.52 0.39 -6.03 16 10 H -0.26 -6.24 6.53 56.52 0.37 -5.87 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 N -0.69 -13.04 5.06 -56.34 -0.29 -13.33 16 13 C 0.53 9.40 7.71 -12.99 -0.10 9.30 16 14 O -0.56 -11.77 15.90 5.18 0.08 -11.68 16 15 C -0.16 -2.02 9.67 -37.37 -0.36 -2.38 16 16 C -0.03 -0.39 9.64 -37.39 -0.36 -0.75 16 17 C 0.05 0.55 7.02 -36.39 -0.26 0.30 16 18 C -0.19 -1.79 10.88 -39.06 -0.42 -2.22 16 19 C -0.11 -1.09 10.64 -39.18 -0.42 -1.51 16 20 C -0.09 -0.91 7.16 -36.22 -0.26 -1.17 16 21 C 0.61 6.25 8.07 -12.71 -0.10 6.15 16 22 N -0.84 -5.46 8.87 30.33 0.27 -5.19 16 23 O -0.53 -6.95 17.70 5.23 0.09 -6.86 16 24 O -0.15 -1.62 10.01 3.89 0.04 -1.58 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.40 6.48 8.52 -40.82 -0.35 6.13 16 30 H 0.13 1.37 7.78 -52.49 -0.41 0.96 16 31 H 0.17 1.86 7.53 -52.49 -0.39 1.46 16 32 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.41 2.00 8.58 -40.82 -0.35 1.65 16 35 H 0.41 1.91 8.93 -40.82 -0.36 1.55 16 LS Contribution 312.97 15.07 4.72 4.72 Total: -1.00 -33.41 312.97 -4.64 -38.05 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -3.67 Total: 6.49 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -2.51 Total: -2.60 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.76 Total: -43.71 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.21 Total: -20.13 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.14 Total: 17.18 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.41 -4.64 -38.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824688780.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.656 kcal (2) G-P(sol) polarization free energy of solvation -33.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds