Wall clock time and date at job start Tue Mar 31 2020 01:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.47204 * 120.00127 * 2 1 3 13 13 C 1.34775 * 120.00366 * 274.99782 * 12 2 1 14 14 O 1.21713 * 119.99593 * 0.02562 * 13 12 2 15 15 C 1.46370 * 120.00161 * 180.02562 * 13 12 2 16 16 C 1.35258 * 119.99845 * 180.02562 * 15 13 12 17 17 C 1.46329 * 119.99998 * 179.97438 * 16 15 13 18 18 C 1.38081 * 125.82256 * 179.71575 * 17 16 15 19 19 C 1.39801 * 106.83842 * 179.84633 * 18 17 16 20 20 C 1.37734 * 106.89619 * 0.41304 * 19 18 17 21 21 C 1.46995 * 125.76908 * 179.73869 * 20 19 18 22 22 N 1.34777 * 119.99897 * 180.02562 * 21 20 19 23 23 O 1.21654 * 120.00433 * 0.02845 * 21 20 19 24 24 O 1.34571 * 125.82130 * 0.02897 * 17 16 15 25 25 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 26 26 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 27 27 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 29 29 H 0.96998 * 120.00005 * 95.00592 * 12 2 1 30 30 H 1.07997 * 120.00367 * 0.02562 * 15 13 12 31 31 H 1.07997 * 119.99788 * 0.02562 * 16 15 13 32 32 H 1.07999 * 126.58100 * 359.97438 * 18 17 16 33 33 H 1.08000 * 126.55226 * 180.15654 * 19 18 17 34 34 H 0.96996 * 119.99865 * 0.02562 * 22 21 20 35 35 H 0.96996 * 120.00094 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8572 1.1625 2.4119 15 6 2.6356 -0.7083 3.5521 16 6 2.7643 -0.0337 4.7173 17 6 3.2521 -0.7235 5.9121 18 6 3.4343 -0.1537 7.1565 19 6 3.9070 -1.1640 7.9993 20 6 4.0045 -2.3075 7.2378 21 6 4.4663 -3.6196 7.7132 22 7 4.5161 -4.6648 6.8637 23 8 4.8034 -3.7621 8.8733 24 8 3.6052 -2.0201 5.9839 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.9026 -0.5282 -4.4376 29 1 2.2491 -1.6317 1.1525 30 1 2.8932 -1.7560 3.5034 31 1 2.5063 1.0139 4.7661 32 1 3.2456 0.8746 7.4274 33 1 4.1531 -1.0655 9.0463 34 1 4.2477 -4.5510 5.9386 35 1 4.8205 -5.5306 7.1774 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824688780.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:47 Heat of formation + Delta-G solvation = -71.846816 kcal Electronic energy + Delta-G solvation = -20126.311562 eV Core-core repulsion = 16704.318703 eV Total energy + Delta-G solvation = -3421.992859 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.67047 -40.67418 -40.31410 -36.95741 -35.19659 -34.68365 -34.39803 -34.06963 -31.91153 -30.09378 -27.23582 -26.11185 -23.85682 -22.84214 -22.12013 -21.40581 -20.76681 -19.44298 -19.05654 -17.98592 -17.93076 -17.53105 -17.50360 -16.49391 -16.19895 -15.82224 -15.56906 -15.46057 -15.03483 -14.85546 -14.20841 -14.12491 -14.11418 -13.83849 -13.48775 -13.33435 -13.19046 -12.77260 -12.14219 -11.71030 -11.67466 -11.62017 -11.28102 -11.04154 -10.93891 -10.86271 -10.86035 -9.93209 -9.18823 -8.38008 -6.44254 -0.74005 0.44642 1.28730 1.37031 1.39114 1.46243 1.50222 2.01264 2.26808 2.36520 2.39748 2.48899 2.98604 3.46998 3.78143 3.86480 4.07009 4.13171 4.46140 4.49349 4.55315 4.60774 4.71006 4.78200 4.91911 4.99763 5.15257 5.31834 5.34994 5.42923 5.59732 5.62111 5.78734 6.13261 6.23779 6.57593 6.84006 7.05149 7.18329 7.39475 8.77198 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033627 B = 0.003033 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.473537 B = 9230.582159 C = 9868.935564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.240 3.760 3 H 0.026 0.974 4 C -0.535 4.535 5 H 0.058 0.942 6 C 0.029 3.971 7 N -0.934 5.934 8 Si 0.939 3.061 9 H -0.259 1.259 10 H -0.260 1.260 11 H -0.293 1.293 12 N -0.692 5.692 13 C 0.532 3.468 14 O -0.594 6.594 15 C -0.176 4.176 16 C -0.001 4.001 17 C 0.029 3.971 18 C -0.173 4.173 19 C -0.121 4.121 20 C -0.092 4.092 21 C 0.610 3.390 22 N -0.822 5.822 23 O -0.561 6.561 24 O -0.155 6.155 25 H 0.048 0.952 26 H 0.041 0.959 27 H 0.065 0.935 28 H 0.270 0.730 29 H 0.410 0.590 30 H 0.155 0.845 31 H 0.168 0.832 32 H 0.191 0.809 33 H 0.177 0.823 34 H 0.419 0.581 35 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.905 -4.026 21.347 21.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.135 3.865 3 H 0.043 0.957 4 C -0.573 4.573 5 H 0.076 0.924 6 C -0.171 4.171 7 N -0.573 5.573 8 Si 0.766 3.234 9 H -0.185 1.185 10 H -0.185 1.185 11 H -0.221 1.221 12 N -0.340 5.340 13 C 0.321 3.679 14 O -0.478 6.478 15 C -0.197 4.197 16 C -0.021 4.021 17 C -0.023 4.023 18 C -0.192 4.192 19 C -0.141 4.141 20 C -0.145 4.145 21 C 0.394 3.606 22 N -0.386 5.386 23 O -0.442 6.442 24 O -0.051 6.051 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.245 0.755 30 H 0.173 0.827 31 H 0.186 0.814 32 H 0.208 0.792 33 H 0.194 0.806 34 H 0.250 0.750 35 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 1.873 -3.407 21.633 21.980 hybrid contribution -0.236 -0.138 -1.017 1.053 sum 1.636 -3.545 20.616 20.983 Atomic orbital electron populations 1.22350 0.97666 1.01798 0.99595 1.18799 0.91327 0.93291 0.83052 0.95661 1.21272 1.32434 1.13661 0.89943 0.92417 1.25569 0.96844 0.99381 0.95340 1.69978 1.46667 1.41958 0.98687 0.86000 0.79769 0.80331 0.77268 1.18501 1.18475 1.22083 1.45957 1.64476 1.14464 1.09115 1.18783 0.78060 0.86524 0.84502 1.90760 1.53488 1.17453 1.86078 1.23135 1.02826 1.01878 0.91822 1.21610 0.93480 0.99547 0.87442 1.21323 1.03413 0.81238 0.96337 1.22602 1.03573 1.02386 0.90660 1.22407 0.99314 0.90479 1.01922 1.22507 1.11324 0.97319 0.83300 1.16615 0.76857 0.82209 0.84882 1.43592 1.67815 1.12489 1.14708 1.90905 1.51165 1.83706 1.18374 1.84013 1.63719 1.27319 1.30041 0.93323 0.94044 0.91580 0.92039 0.75471 0.82691 0.81446 0.79182 0.80572 0.74984 0.74637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.56 8.96 71.98 0.65 -5.91 16 2 C 0.24 11.05 2.15 44.25 0.10 11.15 16 3 H 0.03 1.30 6.63 -2.39 -0.02 1.29 16 4 C -0.53 -28.52 9.31 25.60 0.24 -28.28 16 5 H 0.06 3.26 7.98 -2.91 -0.02 3.24 16 6 C 0.03 1.58 5.45 84.66 0.46 2.04 16 7 N -0.93 -55.23 13.96 21.45 0.30 -54.93 16 8 Si 0.94 43.82 24.37 68.60 1.67 45.49 16 9 H -0.26 -11.34 6.87 99.48 0.68 -10.66 16 10 H -0.26 -12.00 6.53 99.48 0.65 -11.35 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 N -0.69 -25.81 5.06 -450.37 -2.28 -28.09 16 13 C 0.53 18.42 7.71 86.36 0.67 19.09 16 14 O -0.59 -24.87 15.90 -4.39 -0.07 -24.94 16 15 C -0.18 -4.23 9.67 23.70 0.23 -4.00 16 16 C 0.00 -0.02 9.64 23.69 0.23 0.20 16 17 C 0.03 0.53 7.02 24.34 0.17 0.70 16 18 C -0.17 -2.68 10.88 22.61 0.25 -2.43 16 19 C -0.12 -2.05 10.64 22.53 0.24 -1.81 16 20 C -0.09 -1.72 7.16 24.45 0.18 -1.55 16 21 C 0.61 11.47 8.07 86.54 0.70 12.17 16 22 N -0.82 -9.05 8.87 -176.18 -1.56 -10.61 16 23 O -0.56 -14.26 17.70 -4.20 -0.07 -14.33 16 24 O -0.16 -2.89 10.01 -9.00 -0.09 -2.98 16 25 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.04 1.79 3.27 -2.39 -0.01 1.78 16 27 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 29 H 0.41 13.10 8.52 -92.71 -0.79 12.31 16 30 H 0.16 2.90 7.78 -2.91 -0.02 2.88 16 31 H 0.17 3.41 7.53 -2.91 -0.02 3.39 16 32 H 0.19 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.42 3.15 8.58 -92.71 -0.80 2.35 16 35 H 0.42 3.12 8.93 -92.71 -0.83 2.29 16 Total: -1.00 -72.05 312.97 0.67 -71.39 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -1.32 Total: 17.63 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 4.09 Total: 1.37 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -3.54 Total: -93.63 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.23 Total: -42.25 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.67 Total: 45.49 kcal Total: -72.05 0.67 -71.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824688780.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.458 kcal (2) G-P(sol) polarization free energy of solvation -72.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds