Wall clock time and date at job start Tue Mar 31 2020 01:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46975 * 2 1 4 4 C 1.50693 * 109.47226 * 240.00033 * 2 1 3 5 5 O 1.21297 * 120.00063 * 261.30146 * 4 2 1 6 6 N 1.34779 * 119.99819 * 81.03084 * 4 2 1 7 7 C 1.37093 * 120.00282 * 356.16763 * 6 4 2 8 8 H 1.08001 * 119.99972 * 7.30237 * 7 6 4 9 9 C 1.38949 * 120.00211 * 187.29403 * 7 6 4 10 10 N 1.31412 * 119.99877 * 22.39574 * 9 7 6 11 11 Si 1.86800 * 120.00056 * 202.39266 * 9 7 6 12 12 H 1.48504 * 109.47150 * 60.00454 * 11 9 7 13 13 H 1.48500 * 109.47192 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47084 * 300.00014 * 11 9 7 15 15 C 1.46506 * 119.99992 * 176.17219 * 6 4 2 16 16 C 1.50697 * 109.47362 * 89.99540 * 15 6 4 17 17 O 1.20828 * 119.99781 * 0.02562 * 16 15 6 18 18 O 1.34228 * 120.00109 * 180.02562 * 16 15 6 19 19 C 1.50701 * 109.47023 * 119.99790 * 2 1 3 20 20 C 1.38675 * 120.41675 * 239.72317 * 19 2 1 21 21 C 1.38631 * 118.41842 * 179.78295 * 20 19 2 22 22 C 1.38230 * 119.15893 * 0.51495 * 21 20 19 23 23 N 1.31856 * 120.76536 * 359.72766 * 22 21 20 24 24 C 1.31885 * 121.72218 * 359.97438 * 23 22 21 25 25 H 1.08995 * 109.47019 * 174.27868 * 1 2 3 26 26 H 1.09005 * 109.47114 * 294.27859 * 1 2 3 27 27 H 1.08998 * 109.46863 * 54.27755 * 1 2 3 28 28 H 0.97000 * 120.00060 * 184.40307 * 10 9 7 29 29 H 1.09001 * 109.47289 * 210.00018 * 15 6 4 30 30 H 1.09008 * 109.46799 * 329.99664 * 15 6 4 31 31 H 0.96700 * 116.99783 * 180.02562 * 18 16 15 32 32 H 1.07997 * 120.79413 * 0.02562 * 20 19 2 33 33 H 1.08003 * 120.42097 * 180.21702 * 21 20 19 34 34 H 1.08001 * 119.61491 * 179.74656 * 22 21 20 35 35 H 1.08003 * 119.61273 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.3843 -1.8690 -1.1606 6 7 2.0854 -0.0598 -2.4096 7 6 1.6095 1.2221 -2.5074 8 1 1.3014 1.7530 -1.6187 9 6 1.5235 1.8385 -3.7497 10 7 1.4644 1.1101 -4.8419 11 14 1.4920 3.7025 -3.8673 12 1 2.7369 4.2569 -3.2772 13 1 1.3967 4.1070 -5.2930 14 1 0.3169 4.2255 -3.1253 15 6 2.6516 -0.7227 -3.5871 16 6 1.5600 -1.4530 -4.3260 17 8 0.4253 -1.4224 -3.9119 18 8 1.8482 -2.1373 -5.4442 19 6 2.0323 -0.7104 1.2305 20 6 2.8348 -0.0464 2.1461 21 6 3.2699 -0.7384 3.2658 22 6 2.9008 -2.0608 3.4258 23 7 2.1404 -2.6618 2.5318 24 6 1.7035 -2.0330 1.4580 25 1 -0.3633 -1.0225 -0.1024 26 1 -0.3633 0.4226 0.9368 27 1 -0.3633 0.6000 -0.8343 28 1 1.4688 1.5391 -5.7118 29 1 3.0990 0.0232 -4.2440 30 1 3.4153 -1.4337 -3.2716 31 1 1.1148 -2.5893 -5.8835 32 1 3.1110 0.9863 1.9925 33 1 3.8932 -0.2517 4.0014 34 1 3.2390 -2.6081 4.2933 35 1 1.0821 -2.5583 0.7478 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825971797.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:28 Heat of formation + Delta-G solvation = -79.621782 kcal Electronic energy + Delta-G solvation = -22111.002058 eV Core-core repulsion = 18688.672051 eV Total energy + Delta-G solvation = -3422.330007 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.14232 -39.23248 -38.13896 -35.31475 -34.56208 -33.91819 -31.78076 -31.66714 -29.48288 -27.72383 -25.09090 -24.12758 -23.14886 -22.06247 -20.49646 -19.19166 -17.28051 -16.98318 -16.73451 -16.48138 -15.54234 -15.49263 -14.90751 -14.45069 -14.34299 -14.07970 -13.71173 -13.38924 -13.21180 -12.83031 -12.72834 -12.24765 -11.95821 -11.78066 -11.58558 -11.41699 -10.95553 -10.91957 -10.80798 -10.54996 -10.49992 -10.25462 -9.63126 -9.52103 -9.08707 -9.05209 -8.66726 -8.47096 -8.13221 -6.60417 -4.04737 1.47851 1.62066 3.02709 3.13450 3.14608 3.53500 3.69876 3.91959 4.13990 4.28680 4.60524 4.80507 4.93091 5.09455 5.19462 5.31428 5.43783 5.69243 5.78400 5.80751 6.02583 6.14771 6.23194 6.35279 6.38244 6.44688 6.60577 6.63965 6.70259 6.83183 7.07516 7.25492 7.43629 7.63132 8.12800 8.34131 8.88024 9.16965 9.27194 9.66076 10.46011 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019331 B = 0.006383 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.094509 B = 4385.269655 C = 5362.071987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.052 4.052 3 H 0.098 0.902 4 C 0.472 3.528 5 O -0.596 6.596 6 N -0.426 5.426 7 C -0.331 4.331 8 H 0.108 0.892 9 C 0.037 3.963 10 N -0.871 5.871 11 Si 0.923 3.077 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.272 1.272 15 C 0.153 3.847 16 C 0.502 3.498 17 O -0.514 6.514 18 O -0.535 6.535 19 C -0.107 4.107 20 C -0.075 4.075 21 C -0.183 4.183 22 C 0.083 3.917 23 N -0.493 5.493 24 C 0.140 3.860 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.274 0.726 29 H 0.130 0.870 30 H 0.081 0.919 31 H 0.390 0.610 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.148 0.852 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.402 1.170 6.954 7.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.074 4.074 3 H 0.116 0.884 4 C 0.261 3.739 5 O -0.482 6.482 6 N -0.144 5.144 7 C -0.458 4.458 8 H 0.126 0.874 9 C -0.167 4.167 10 N -0.509 5.509 11 Si 0.749 3.251 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.028 3.972 16 C 0.343 3.657 17 O -0.400 6.400 18 O -0.346 6.346 19 C -0.109 4.109 20 C -0.101 4.101 21 C -0.203 4.203 22 C -0.073 4.073 23 N -0.201 5.201 24 C -0.017 4.017 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.147 0.853 30 H 0.099 0.901 31 H 0.246 0.754 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.165 0.835 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.279 -0.010 7.202 7.555 hybrid contribution -0.348 1.697 -0.838 1.924 sum 1.931 1.687 6.365 6.862 Atomic orbital electron populations 1.21667 0.92304 1.02853 1.02215 1.19976 0.97554 0.99740 0.90092 0.88397 1.19837 0.82651 0.86442 0.84977 1.90563 1.54437 1.17011 1.86152 1.43439 1.52365 1.13103 1.05491 1.19686 1.43381 0.87764 0.94951 0.87398 1.25150 0.96209 1.00595 0.94741 1.69850 1.46218 1.36326 0.98553 0.86054 0.79051 0.82430 0.77583 1.19747 1.20847 1.19724 1.20657 0.91796 0.96673 0.88112 1.23675 0.90819 0.73852 0.77347 1.90552 1.23328 1.58949 1.67153 1.84527 1.44965 1.63928 1.41136 1.20661 0.98133 0.95931 0.96216 1.21489 0.95161 1.00166 0.93317 1.21990 1.02741 0.96406 0.99134 1.22657 0.94726 0.92344 0.97622 1.67726 1.10728 1.38703 1.02967 1.22675 0.95512 0.91097 0.92430 0.92527 0.92786 0.90221 0.91504 0.85285 0.90122 0.75441 0.85089 0.85367 0.83496 0.82638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.72 37.16 0.32 -2.03 16 2 C -0.05 -0.97 2.07 -92.93 -0.19 -1.17 16 3 H 0.10 1.72 6.55 -51.93 -0.34 1.38 16 4 C 0.47 10.89 6.76 -10.99 -0.07 10.82 16 5 O -0.60 -15.06 14.23 5.54 0.08 -14.98 16 6 N -0.43 -10.19 2.11 -116.09 -0.25 -10.44 16 7 C -0.33 -7.81 8.53 -14.94 -0.13 -7.94 16 8 H 0.11 2.35 5.52 -52.49 -0.29 2.06 16 9 C 0.04 0.88 4.99 -17.47 -0.09 0.79 16 10 N -0.87 -21.52 8.90 55.50 0.49 -21.02 16 11 Si 0.92 18.35 29.61 -169.99 -5.03 13.31 16 12 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 13 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 14 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 15 C 0.15 3.58 5.22 -5.19 -0.03 3.56 16 16 C 0.50 12.05 6.45 36.00 0.23 12.28 16 17 O -0.51 -13.91 17.04 -18.75 -0.32 -14.23 16 18 O -0.53 -10.68 13.42 -39.25 -0.53 -11.21 16 19 C -0.11 -1.89 4.61 -104.48 -0.48 -2.38 16 20 C -0.08 -1.12 9.81 -39.27 -0.39 -1.50 16 21 C -0.18 -2.41 10.11 -39.44 -0.40 -2.81 16 22 C 0.08 1.20 11.18 -17.54 -0.20 1.01 16 23 N -0.49 -8.76 10.36 -13.25 -0.14 -8.90 16 24 C 0.14 2.62 9.11 -17.55 -0.16 2.46 16 25 H 0.06 1.04 7.62 -51.93 -0.40 0.65 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.52 6.97 -51.93 -0.36 1.16 16 28 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 29 H 0.13 3.01 6.12 -51.93 -0.32 2.69 16 30 H 0.08 1.80 7.48 -51.92 -0.39 1.41 16 31 H 0.39 6.06 9.10 45.56 0.41 6.47 16 32 H 0.13 1.63 8.00 -52.49 -0.42 1.21 16 33 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 34 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.16 3.11 7.07 -52.48 -0.37 2.74 16 LS Contribution 301.57 15.07 4.54 4.54 Total: -1.00 -31.12 301.57 -5.59 -36.71 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -2.87 Total: 13.13 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: -1.57 Total: 13.09 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.11 Total: -40.36 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -0.77 Total: -40.43 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.12 -5.59 -36.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825971797.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.914 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds