Wall clock time and date at job start Tue Mar 31 2020 01:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46975 * 2 1 4 4 C 1.50693 * 109.47226 * 240.00033 * 2 1 3 5 5 O 1.21297 * 120.00063 * 261.30146 * 4 2 1 6 6 N 1.34779 * 119.99819 * 81.03084 * 4 2 1 7 7 C 1.37093 * 120.00282 * 356.16763 * 6 4 2 8 8 H 1.08001 * 119.99972 * 7.30237 * 7 6 4 9 9 C 1.38949 * 120.00211 * 187.29403 * 7 6 4 10 10 N 1.31412 * 119.99877 * 22.39574 * 9 7 6 11 11 Si 1.86800 * 120.00056 * 202.39266 * 9 7 6 12 12 H 1.48504 * 109.47150 * 60.00454 * 11 9 7 13 13 H 1.48500 * 109.47192 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47084 * 300.00014 * 11 9 7 15 15 C 1.46506 * 119.99992 * 176.17219 * 6 4 2 16 16 C 1.50697 * 109.47362 * 89.99540 * 15 6 4 17 17 O 1.20828 * 119.99781 * 0.02562 * 16 15 6 18 18 O 1.34228 * 120.00109 * 180.02562 * 16 15 6 19 19 C 1.50701 * 109.47023 * 119.99790 * 2 1 3 20 20 C 1.38675 * 120.41675 * 239.72317 * 19 2 1 21 21 C 1.38631 * 118.41842 * 179.78295 * 20 19 2 22 22 C 1.38230 * 119.15893 * 0.51495 * 21 20 19 23 23 N 1.31856 * 120.76536 * 359.72766 * 22 21 20 24 24 C 1.31885 * 121.72218 * 359.97438 * 23 22 21 25 25 H 1.08995 * 109.47019 * 174.27868 * 1 2 3 26 26 H 1.09005 * 109.47114 * 294.27859 * 1 2 3 27 27 H 1.08998 * 109.46863 * 54.27755 * 1 2 3 28 28 H 0.97000 * 120.00060 * 184.40307 * 10 9 7 29 29 H 1.09001 * 109.47289 * 210.00018 * 15 6 4 30 30 H 1.09008 * 109.46799 * 329.99664 * 15 6 4 31 31 H 0.96700 * 116.99783 * 180.02562 * 18 16 15 32 32 H 1.07997 * 120.79413 * 0.02562 * 20 19 2 33 33 H 1.08003 * 120.42097 * 180.21702 * 21 20 19 34 34 H 1.08001 * 119.61491 * 179.74656 * 22 21 20 35 35 H 1.08003 * 119.61273 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.3843 -1.8690 -1.1606 6 7 2.0854 -0.0598 -2.4096 7 6 1.6095 1.2221 -2.5074 8 1 1.3014 1.7530 -1.6187 9 6 1.5235 1.8385 -3.7497 10 7 1.4644 1.1101 -4.8419 11 14 1.4920 3.7025 -3.8673 12 1 2.7369 4.2569 -3.2772 13 1 1.3967 4.1070 -5.2930 14 1 0.3169 4.2255 -3.1253 15 6 2.6516 -0.7227 -3.5871 16 6 1.5600 -1.4530 -4.3260 17 8 0.4253 -1.4224 -3.9119 18 8 1.8482 -2.1373 -5.4442 19 6 2.0323 -0.7104 1.2305 20 6 2.8348 -0.0464 2.1461 21 6 3.2699 -0.7384 3.2658 22 6 2.9008 -2.0608 3.4258 23 7 2.1404 -2.6618 2.5318 24 6 1.7035 -2.0330 1.4580 25 1 -0.3633 -1.0225 -0.1024 26 1 -0.3633 0.4226 0.9368 27 1 -0.3633 0.6000 -0.8343 28 1 1.4688 1.5391 -5.7118 29 1 3.0990 0.0232 -4.2440 30 1 3.4153 -1.4337 -3.2716 31 1 1.1148 -2.5893 -5.8835 32 1 3.1110 0.9863 1.9925 33 1 3.8932 -0.2517 4.0014 34 1 3.2390 -2.6081 4.2933 35 1 1.0821 -2.5583 0.7478 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825971797.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:27 Heat of formation + Delta-G solvation = -100.284580 kcal Electronic energy + Delta-G solvation = -22111.898064 eV Core-core repulsion = 18688.672051 eV Total energy + Delta-G solvation = -3423.226013 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.60803 -40.89507 -39.85221 -37.08431 -36.42967 -35.40007 -33.48284 -32.96219 -30.86740 -29.45753 -26.85714 -25.57187 -24.36536 -23.58678 -22.15446 -20.93196 -18.96159 -18.77876 -18.26474 -17.81968 -17.32554 -16.94734 -16.46079 -16.17343 -16.06546 -15.56445 -15.30575 -14.84299 -14.60431 -14.35640 -13.88702 -13.81733 -13.56480 -13.43032 -13.30723 -12.98096 -12.57480 -12.44289 -12.23031 -12.19076 -12.12352 -12.07961 -11.52417 -10.91903 -10.75696 -10.33561 -10.26715 -9.97533 -9.79818 -8.38488 -5.88283 0.27229 0.44373 1.44412 1.52593 1.61663 1.75145 1.86577 2.27654 2.53177 2.81316 3.06201 3.19078 3.57612 3.85827 3.97740 4.15772 4.18540 4.24233 4.41731 4.45810 4.50206 4.74633 4.80357 4.83607 4.94775 4.97268 5.01920 5.23333 5.27244 5.44671 5.52360 5.65687 5.89738 5.91701 6.32540 7.07550 7.12670 7.37755 7.48406 7.87441 8.68381 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019331 B = 0.006383 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.094509 B = 4385.269655 C = 5362.071987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.043 4.043 3 H 0.115 0.885 4 C 0.460 3.540 5 O -0.627 6.627 6 N -0.437 5.437 7 C -0.345 4.345 8 H 0.124 0.876 9 C -0.005 4.005 10 N -0.899 5.899 11 Si 0.992 3.008 12 H -0.261 1.261 13 H -0.290 1.290 14 H -0.268 1.268 15 C 0.150 3.850 16 C 0.504 3.496 17 O -0.552 6.552 18 O -0.523 6.523 19 C -0.125 4.125 20 C -0.075 4.075 21 C -0.166 4.166 22 C 0.079 3.921 23 N -0.520 5.520 24 C 0.116 3.884 25 H 0.036 0.964 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.273 0.727 29 H 0.129 0.871 30 H 0.083 0.917 31 H 0.411 0.589 32 H 0.160 0.840 33 H 0.174 0.826 34 H 0.183 0.817 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.486 3.118 8.888 10.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.065 4.065 3 H 0.133 0.867 4 C 0.250 3.750 5 O -0.514 6.514 6 N -0.154 5.154 7 C -0.472 4.472 8 H 0.141 0.859 9 C -0.206 4.206 10 N -0.539 5.539 11 Si 0.815 3.185 12 H -0.185 1.185 13 H -0.216 1.216 14 H -0.193 1.193 15 C 0.024 3.976 16 C 0.347 3.653 17 O -0.442 6.442 18 O -0.335 6.335 19 C -0.128 4.128 20 C -0.100 4.100 21 C -0.186 4.186 22 C -0.078 4.078 23 N -0.230 5.230 24 C -0.040 4.040 25 H 0.055 0.945 26 H 0.105 0.895 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.146 0.854 30 H 0.101 0.899 31 H 0.270 0.730 32 H 0.178 0.822 33 H 0.192 0.808 34 H 0.200 0.800 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.366 1.927 9.119 9.910 hybrid contribution -0.642 0.978 -1.418 1.838 sum 2.724 2.905 7.701 8.670 Atomic orbital electron populations 1.21591 0.91897 1.01543 1.03141 1.19928 0.97798 1.00037 0.88690 0.86748 1.20670 0.81907 0.86367 0.86009 1.90530 1.55604 1.18473 1.86814 1.43702 1.52399 1.13557 1.05784 1.20118 1.43533 0.87712 0.95788 0.85889 1.26025 0.95674 1.04624 0.94290 1.69940 1.47261 1.37815 0.98874 0.85003 0.79413 0.77067 0.76994 1.18514 1.21588 1.19281 1.20696 0.91854 0.96689 0.88365 1.23796 0.90290 0.73463 0.77752 1.90528 1.24721 1.60555 1.68374 1.84459 1.45852 1.63364 1.39842 1.20584 0.99878 0.95676 0.96631 1.21877 0.93774 1.01493 0.92895 1.22464 1.01496 0.95643 0.98949 1.23356 0.93366 0.93485 0.97614 1.67670 1.12127 1.39718 1.03465 1.22318 0.96811 0.91854 0.93039 0.94456 0.89522 0.91911 0.91709 0.85380 0.89860 0.73025 0.82219 0.80823 0.79979 0.85741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.42 8.72 71.98 0.63 -3.79 16 2 C -0.04 -1.60 2.07 -12.29 -0.03 -1.63 16 3 H 0.11 3.82 6.55 -2.39 -0.02 3.80 16 4 C 0.46 21.68 6.76 87.65 0.59 22.27 16 5 O -0.63 -32.90 14.23 -3.08 -0.04 -32.94 16 6 N -0.44 -21.23 2.11 -639.58 -1.35 -22.58 16 7 C -0.35 -16.21 8.53 84.04 0.72 -15.49 16 8 H 0.12 5.23 5.52 -2.91 -0.02 5.21 16 9 C -0.01 -0.24 4.99 84.93 0.42 0.18 16 10 N -0.90 -44.75 8.90 21.66 0.19 -44.56 16 11 Si 0.99 36.87 29.61 68.60 2.03 38.90 16 12 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 13 H -0.29 -11.02 7.11 99.48 0.71 -10.31 16 14 H -0.27 -9.72 7.11 99.48 0.71 -9.02 16 15 C 0.15 7.17 5.22 85.63 0.45 7.61 16 16 C 0.50 24.73 6.45 71.24 0.46 25.19 16 17 O -0.55 -30.81 17.04 21.96 0.37 -30.44 16 18 O -0.52 -20.94 13.42 -51.39 -0.69 -21.63 16 19 C -0.13 -4.33 4.61 -19.77 -0.09 -4.42 16 20 C -0.07 -1.97 9.81 22.47 0.22 -1.75 16 21 C -0.17 -3.67 10.11 22.36 0.23 -3.44 16 22 C 0.08 2.04 11.18 84.69 0.95 2.99 16 23 N -0.52 -18.28 10.36 -195.84 -2.03 -20.31 16 24 C 0.12 4.44 9.11 84.67 0.77 5.21 16 25 H 0.04 1.44 7.62 -2.39 -0.02 1.42 16 26 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 27 H 0.06 2.42 6.97 -2.39 -0.02 2.40 16 28 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 29 H 0.13 6.10 6.12 -2.39 -0.01 6.09 16 30 H 0.08 3.84 7.48 -2.38 -0.02 3.83 16 31 H 0.41 12.62 9.10 -74.06 -0.67 11.94 16 32 H 0.16 3.24 8.00 -2.91 -0.02 3.22 16 33 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.18 3.28 8.06 -2.91 -0.02 3.26 16 35 H 0.13 5.39 7.07 -2.91 -0.02 5.37 16 Total: -1.00 -69.17 301.57 4.27 -64.90 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.47 Total: 35.71 kcal Atomic # 6 Polarization: 27.62 SS G_CDS: 5.32 Total: 32.94 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -3.19 Total: -87.44 kcal Atomic # 8 Polarization: -84.65 SS G_CDS: -0.36 Total: -85.01 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.90 kcal Total: -69.17 4.27 -64.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825971797.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.380 kcal (2) G-P(sol) polarization free energy of solvation -69.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds