Wall clock time and date at job start Tue Mar 31 2020 01:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46997 * 2 1 4 4 C 1.50701 * 109.46892 * 239.99771 * 2 1 3 5 5 H 1.07998 * 120.00047 * 275.00121 * 4 2 1 6 6 C 1.37878 * 119.99688 * 95.00941 * 4 2 1 7 7 N 1.31517 * 120.00007 * 184.91695 * 6 4 2 8 8 Si 1.86796 * 120.00115 * 4.90943 * 6 4 2 9 9 H 1.48500 * 109.47377 * 84.83663 * 8 6 4 10 10 H 1.48501 * 109.47393 * 204.83950 * 8 6 4 11 11 H 1.48502 * 109.47220 * 324.83726 * 8 6 4 12 12 N 1.46496 * 109.46717 * 120.00266 * 2 1 3 13 13 N 1.40107 * 119.99727 * 269.72130 * 12 2 1 14 14 C 1.29742 * 119.99882 * 180.27695 * 13 12 2 15 15 C 1.47474 * 120.00045 * 180.02562 * 14 13 12 16 16 C 1.39208 * 120.10988 * 179.72523 * 15 14 13 17 17 C 1.39512 * 119.73837 * 179.81531 * 16 15 14 18 18 C 1.47504 * 120.01762 * 180.20088 * 17 16 15 19 19 O 1.21505 * 119.99600 * 0.23873 * 18 17 16 20 20 O 1.34745 * 120.00139 * 180.23175 * 18 17 16 21 21 C 1.39892 * 119.96539 * 0.43986 * 17 16 15 22 22 C 1.37772 * 120.22522 * 359.78559 * 21 17 16 23 23 C 1.38764 * 120.26089 * 0.02562 * 22 21 17 24 24 O 1.35649 * 119.98982 * 179.97438 * 23 22 21 25 25 H 1.09004 * 109.46524 * 55.02542 * 1 2 3 26 26 H 1.08993 * 109.47236 * 175.02521 * 1 2 3 27 27 H 1.09001 * 109.47052 * 295.02861 * 1 2 3 28 28 H 0.97000 * 120.00098 * 179.97438 * 7 6 4 29 29 H 0.96997 * 120.00498 * 89.99640 * 12 2 1 30 30 H 1.07999 * 120.00176 * 359.97438 * 14 13 12 31 31 H 1.08002 * 120.13287 * 359.97438 * 16 15 14 32 32 H 0.96698 * 116.99770 * 179.97438 * 20 18 17 33 33 H 1.07994 * 119.88634 * 179.77417 * 21 17 16 34 34 H 1.08001 * 119.87009 * 179.97438 * 22 21 17 35 35 H 0.96705 * 113.99426 * 270.02616 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1355 -1.7855 -1.2290 6 6 2.3604 0.0121 -2.3580 7 7 2.7060 -0.6132 -3.4622 8 14 2.3138 1.8790 -2.3173 9 1 3.5993 2.3948 -1.7821 10 1 2.1060 2.3991 -3.6927 11 1 1.1988 2.3275 -1.4449 12 7 2.0183 -0.6907 1.1961 13 7 2.2573 0.0309 2.3731 14 6 2.6948 -0.5799 3.4309 15 6 2.9459 0.1795 4.6699 16 6 3.4098 -0.4745 5.8079 17 6 3.6484 0.2521 6.9747 18 6 4.1443 -0.4339 8.1827 19 8 4.3492 -1.6313 8.1604 20 8 4.3702 0.2674 9.3109 21 6 3.4123 1.6307 7.0000 22 6 2.9487 2.2757 5.8743 23 6 2.7119 1.5628 4.7075 24 8 2.2549 2.2033 3.6025 25 1 -0.3632 0.5891 -0.8421 26 1 -0.3633 -1.0237 -0.0891 27 1 -0.3633 0.4348 0.9312 28 1 2.9365 -0.1049 -4.2556 29 1 2.1799 -1.6468 1.1722 30 1 2.8744 -1.6445 3.4043 31 1 3.5869 -1.5397 5.7868 32 1 4.6945 -0.2258 10.0768 33 1 3.5940 2.1913 7.9050 34 1 2.7680 3.3401 5.9003 35 1 1.2906 2.2422 3.5411 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827218763.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:11 Heat of formation + Delta-G solvation = -63.193166 kcal Electronic energy + Delta-G solvation = -20416.378184 eV Core-core repulsion = 16994.760575 eV Total energy + Delta-G solvation = -3421.617608 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.60539 -39.41485 -36.59598 -36.50790 -36.20160 -34.13518 -32.15582 -30.97371 -30.36455 -27.57338 -25.32919 -24.48950 -23.39343 -21.82325 -20.46401 -20.13069 -18.39884 -18.11499 -17.55347 -17.10796 -16.19336 -15.83441 -15.37616 -15.31158 -14.79780 -14.50423 -13.79135 -13.74621 -13.32242 -13.09233 -12.59190 -12.49382 -12.46631 -12.15267 -12.04059 -11.76319 -11.23882 -11.11559 -10.85758 -10.81782 -10.61759 -10.45384 -9.94457 -9.53703 -9.24744 -9.15468 -8.87558 -8.71111 -6.97437 -6.27074 -4.30854 0.47241 0.99550 2.22545 2.77415 2.93990 3.22001 3.30322 3.33317 3.61438 3.72435 4.22443 4.27631 4.66040 4.73096 4.96214 5.04456 5.12491 5.28322 5.60842 5.68908 5.91048 5.97045 6.06535 6.22273 6.24684 6.34821 6.46033 6.52561 6.62879 6.69597 7.00403 7.21572 7.49000 7.66418 7.78001 8.00824 8.32947 8.75101 9.13803 9.33706 10.84922 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031921 B = 0.003487 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.955333 B = 8028.185488 C = 8438.214741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.264 3.736 3 H 0.046 0.954 4 C -0.530 4.530 5 H 0.077 0.923 6 C 0.080 3.920 7 N -0.888 5.888 8 Si 0.879 3.121 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.616 5.616 13 N -0.173 5.173 14 C -0.022 4.022 15 C -0.044 4.044 16 C -0.032 4.032 17 C -0.144 4.144 18 C 0.531 3.469 19 O -0.517 6.517 20 O -0.514 6.514 21 C -0.055 4.055 22 C -0.162 4.162 23 C 0.164 3.836 24 O -0.471 6.471 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.026 0.974 28 H 0.269 0.731 29 H 0.372 0.628 30 H 0.107 0.893 31 H 0.142 0.858 32 H 0.413 0.587 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 5.057 22.260 22.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.161 3.839 3 H 0.064 0.936 4 C -0.569 4.569 5 H 0.095 0.905 6 C -0.124 4.124 7 N -0.524 5.524 8 Si 0.706 3.294 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.186 1.186 12 N -0.353 5.353 13 N 0.013 4.987 14 C -0.229 4.229 15 C -0.047 4.047 16 C -0.053 4.053 17 C -0.145 4.145 18 C 0.376 3.624 19 O -0.406 6.406 20 O -0.326 6.326 21 C -0.074 4.074 22 C -0.180 4.180 23 C 0.116 3.884 24 O -0.282 6.282 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.209 0.791 30 H 0.124 0.876 31 H 0.160 0.840 32 H 0.271 0.729 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -0.404 6.008 20.967 21.814 hybrid contribution 0.118 -0.741 0.573 0.944 sum -0.286 5.268 21.540 22.176 Atomic orbital electron populations 1.22336 0.99084 1.00658 0.98850 1.18935 0.90033 0.93975 0.80946 0.93616 1.21040 1.45349 0.95753 0.94741 0.90519 1.24962 0.93543 0.98816 0.95110 1.69882 1.44509 1.36311 1.01740 0.86827 0.79657 0.85567 0.77354 1.19786 1.21206 1.18579 1.49361 1.71311 1.08065 1.06549 1.74112 1.03540 1.27272 0.93740 1.23273 1.11022 0.96889 0.91740 1.18753 1.01312 0.92083 0.92539 1.21134 0.94082 1.00440 0.89628 1.18797 1.09559 0.94248 0.91919 1.20845 0.73822 0.84786 0.82965 1.90903 1.49228 1.16004 1.84498 1.84563 1.79320 1.45977 1.22725 1.21241 0.95002 0.92752 0.98426 1.21365 1.03751 1.01010 0.91905 1.18927 0.94616 0.89072 0.85829 1.84772 1.26910 1.76471 1.40046 0.92917 0.93512 0.95449 0.92154 0.79097 0.87563 0.83986 0.72886 0.84393 0.84558 0.74707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.50 37.16 0.35 -2.75 16 2 C 0.26 6.10 2.89 -69.08 -0.20 5.90 16 3 H 0.05 1.12 5.29 -51.93 -0.27 0.84 16 4 C -0.53 -14.26 9.08 -34.44 -0.31 -14.57 16 5 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 6 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 7 N -0.89 -26.14 13.96 55.43 0.77 -25.36 16 8 Si 0.88 21.01 26.99 -169.99 -4.59 16.42 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.26 -5.92 6.82 56.52 0.39 -5.54 16 12 N -0.62 -12.79 6.10 -5.88 -0.04 -12.83 16 13 N -0.17 -3.24 9.33 32.16 0.30 -2.94 16 14 C -0.02 -0.36 10.75 -14.67 -0.16 -0.51 16 15 C -0.04 -0.61 5.87 -104.98 -0.62 -1.22 16 16 C -0.03 -0.39 9.32 -38.75 -0.36 -0.75 16 17 C -0.14 -1.61 5.87 -105.03 -0.62 -2.23 16 18 C 0.53 5.74 8.26 34.51 0.29 6.03 16 19 O -0.52 -7.05 17.12 -19.27 -0.33 -7.38 16 20 O -0.51 -3.80 12.66 -40.61 -0.51 -4.31 16 21 C -0.05 -0.53 9.60 -39.13 -0.38 -0.90 16 22 C -0.16 -1.68 9.95 -39.56 -0.39 -2.07 16 23 C 0.16 2.14 6.72 -38.59 -0.26 1.88 16 24 O -0.47 -6.65 11.35 -18.65 -0.21 -6.86 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.37 7.35 8.60 -182.60 -1.57 5.78 16 30 H 0.11 1.55 8.02 -52.49 -0.42 1.12 16 31 H 0.14 1.67 7.64 -52.49 -0.40 1.27 16 32 H 0.41 1.20 9.11 45.56 0.42 1.62 16 33 H 0.14 1.03 7.59 -52.49 -0.40 0.63 16 34 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.39 4.21 9.06 45.56 0.41 4.63 16 LS Contribution 315.99 15.07 4.76 4.76 Total: -1.00 -32.79 315.99 -6.10 -38.89 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -3.50 Total: 8.67 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -2.75 Total: -9.06 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 1.04 Total: -41.13 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -1.06 Total: -18.55 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.59 Total: 16.42 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.79 -6.10 -38.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827218763.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.303 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds