Wall clock time and date at job start Tue Mar 31 2020 01:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46997 * 2 1 4 4 C 1.50701 * 109.46892 * 239.99771 * 2 1 3 5 5 H 1.07998 * 120.00047 * 275.00121 * 4 2 1 6 6 C 1.37878 * 119.99688 * 95.00941 * 4 2 1 7 7 N 1.31517 * 120.00007 * 184.91695 * 6 4 2 8 8 Si 1.86796 * 120.00115 * 4.90943 * 6 4 2 9 9 H 1.48500 * 109.47377 * 84.83663 * 8 6 4 10 10 H 1.48501 * 109.47393 * 204.83950 * 8 6 4 11 11 H 1.48502 * 109.47220 * 324.83726 * 8 6 4 12 12 N 1.46496 * 109.46717 * 120.00266 * 2 1 3 13 13 N 1.40107 * 119.99727 * 269.72130 * 12 2 1 14 14 C 1.29742 * 119.99882 * 180.27695 * 13 12 2 15 15 C 1.47474 * 120.00045 * 180.02562 * 14 13 12 16 16 C 1.39208 * 120.10988 * 179.72523 * 15 14 13 17 17 C 1.39512 * 119.73837 * 179.81531 * 16 15 14 18 18 C 1.47504 * 120.01762 * 180.20088 * 17 16 15 19 19 O 1.21505 * 119.99600 * 0.23873 * 18 17 16 20 20 O 1.34745 * 120.00139 * 180.23175 * 18 17 16 21 21 C 1.39892 * 119.96539 * 0.43986 * 17 16 15 22 22 C 1.37772 * 120.22522 * 359.78559 * 21 17 16 23 23 C 1.38764 * 120.26089 * 0.02562 * 22 21 17 24 24 O 1.35649 * 119.98982 * 179.97438 * 23 22 21 25 25 H 1.09004 * 109.46524 * 55.02542 * 1 2 3 26 26 H 1.08993 * 109.47236 * 175.02521 * 1 2 3 27 27 H 1.09001 * 109.47052 * 295.02861 * 1 2 3 28 28 H 0.97000 * 120.00098 * 179.97438 * 7 6 4 29 29 H 0.96997 * 120.00498 * 89.99640 * 12 2 1 30 30 H 1.07999 * 120.00176 * 359.97438 * 14 13 12 31 31 H 1.08002 * 120.13287 * 359.97438 * 16 15 14 32 32 H 0.96698 * 116.99770 * 179.97438 * 20 18 17 33 33 H 1.07994 * 119.88634 * 179.77417 * 21 17 16 34 34 H 1.08001 * 119.87009 * 179.97438 * 22 21 17 35 35 H 0.96705 * 113.99426 * 270.02616 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1355 -1.7855 -1.2290 6 6 2.3604 0.0121 -2.3580 7 7 2.7060 -0.6132 -3.4622 8 14 2.3138 1.8790 -2.3173 9 1 3.5993 2.3948 -1.7821 10 1 2.1060 2.3991 -3.6927 11 1 1.1988 2.3275 -1.4449 12 7 2.0183 -0.6907 1.1961 13 7 2.2573 0.0309 2.3731 14 6 2.6948 -0.5799 3.4309 15 6 2.9459 0.1795 4.6699 16 6 3.4098 -0.4745 5.8079 17 6 3.6484 0.2521 6.9747 18 6 4.1443 -0.4339 8.1827 19 8 4.3492 -1.6313 8.1604 20 8 4.3702 0.2674 9.3109 21 6 3.4123 1.6307 7.0000 22 6 2.9487 2.2757 5.8743 23 6 2.7119 1.5628 4.7075 24 8 2.2549 2.2033 3.6025 25 1 -0.3632 0.5891 -0.8421 26 1 -0.3633 -1.0237 -0.0891 27 1 -0.3633 0.4348 0.9312 28 1 2.9365 -0.1049 -4.2556 29 1 2.1799 -1.6468 1.1722 30 1 2.8744 -1.6445 3.4043 31 1 3.5869 -1.5397 5.7868 32 1 4.6945 -0.2258 10.0768 33 1 3.5940 2.1913 7.9050 34 1 2.7680 3.3401 5.9003 35 1 1.2906 2.2422 3.5411 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827218763.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:10 Heat of formation + Delta-G solvation = -88.510926 kcal Electronic energy + Delta-G solvation = -20417.476044 eV Core-core repulsion = 16994.760575 eV Total energy + Delta-G solvation = -3422.715469 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.45583 -40.33942 -38.02706 -37.47779 -37.01074 -35.78606 -33.91240 -32.23225 -31.33634 -28.99577 -27.28659 -25.36873 -24.54051 -22.74400 -22.03876 -21.38994 -19.51515 -19.21076 -18.83005 -18.15129 -17.61682 -17.01217 -16.65190 -16.29175 -15.93951 -15.68203 -15.29542 -14.72022 -14.58742 -14.47778 -14.28756 -14.00322 -13.61825 -13.31607 -12.98159 -12.92572 -12.74281 -12.66318 -12.50383 -12.16325 -11.84218 -11.72531 -11.65793 -11.24812 -10.85259 -10.71413 -10.21364 -9.82757 -8.42797 -8.38445 -6.46282 -0.42516 0.03059 1.31038 1.34088 1.36865 1.46670 1.83233 1.97748 2.23005 2.29277 2.76137 3.03619 3.30281 3.72726 3.83150 4.13504 4.14732 4.31047 4.47422 4.59160 4.70333 4.82413 4.89335 4.94570 5.05818 5.14062 5.20038 5.35168 5.43624 5.51556 5.60388 5.61761 5.72634 6.12917 6.50436 6.63641 6.89284 7.00201 7.22418 7.69743 8.77325 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031921 B = 0.003487 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.955333 B = 8028.185488 C = 8438.214741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.274 3.726 3 H 0.036 0.964 4 C -0.533 4.533 5 H 0.040 0.960 6 C 0.024 3.976 7 N -0.938 5.938 8 Si 0.941 3.059 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.239 1.239 12 N -0.640 5.640 13 N -0.204 5.204 14 C 0.010 3.990 15 C -0.076 4.076 16 C -0.027 4.027 17 C -0.154 4.154 18 C 0.539 3.461 19 O -0.551 6.551 20 O -0.501 6.501 21 C -0.030 4.030 22 C -0.157 4.157 23 C 0.159 3.841 24 O -0.490 6.490 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.271 0.729 29 H 0.370 0.630 30 H 0.116 0.884 31 H 0.142 0.858 32 H 0.434 0.566 33 H 0.170 0.830 34 H 0.163 0.837 35 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.716 7.397 25.619 26.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.170 3.830 3 H 0.054 0.946 4 C -0.572 4.572 5 H 0.058 0.942 6 C -0.175 4.175 7 N -0.576 5.576 8 Si 0.765 3.235 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.162 1.162 12 N -0.377 5.377 13 N -0.015 5.015 14 C -0.199 4.199 15 C -0.078 4.078 16 C -0.048 4.048 17 C -0.156 4.156 18 C 0.385 3.615 19 O -0.444 6.444 20 O -0.314 6.314 21 C -0.049 4.049 22 C -0.175 4.175 23 C 0.111 3.889 24 O -0.303 6.303 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.207 0.793 30 H 0.134 0.866 31 H 0.159 0.841 32 H 0.296 0.704 33 H 0.187 0.813 34 H 0.181 0.819 35 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -0.544 8.364 24.373 25.774 hybrid contribution 0.257 -1.515 -0.087 1.539 sum -0.286 6.849 24.286 25.235 Atomic orbital electron populations 1.22207 0.97313 1.00717 0.99933 1.18612 0.91228 0.92760 0.80410 0.94598 1.21304 1.44754 0.94391 0.96728 0.94193 1.25796 0.93426 1.03668 0.94647 1.70016 1.46740 1.38241 1.02647 0.85843 0.80063 0.79745 0.77896 1.20160 1.20560 1.16241 1.48847 1.73921 1.07774 1.07133 1.74147 1.06732 1.26919 0.93659 1.23817 1.06637 0.97754 0.91704 1.18729 1.04284 0.92758 0.92066 1.21156 0.93371 1.00580 0.89686 1.18941 1.09766 0.95058 0.91809 1.20714 0.73057 0.84182 0.83555 1.90903 1.50857 1.17487 1.85160 1.84500 1.78699 1.45617 1.22619 1.21597 0.92150 0.92019 0.99171 1.21602 1.02860 1.02172 0.90832 1.19183 0.94395 0.88883 0.86443 1.84730 1.28186 1.76509 1.40884 0.93061 0.93807 0.93168 0.92038 0.79277 0.86640 0.84070 0.70373 0.81257 0.81932 0.73327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.80 9.50 71.98 0.68 -5.12 16 2 C 0.27 12.77 2.89 44.25 0.13 12.90 16 3 H 0.04 1.74 5.29 -2.39 -0.01 1.72 16 4 C -0.53 -29.69 9.08 25.60 0.23 -29.46 16 5 H 0.04 2.45 8.06 -2.91 -0.02 2.42 16 6 C 0.02 1.39 5.47 84.65 0.46 1.85 16 7 N -0.94 -57.17 13.96 21.45 0.30 -56.87 16 8 Si 0.94 43.66 26.99 68.60 1.85 45.51 16 9 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.24 -10.15 6.82 99.48 0.68 -9.47 16 12 N -0.64 -26.97 6.10 -172.52 -1.05 -28.02 16 13 N -0.20 -7.58 9.33 -52.18 -0.49 -8.06 16 14 C 0.01 0.32 10.75 87.44 0.94 1.25 16 15 C -0.08 -1.97 5.87 -20.10 -0.12 -2.09 16 16 C -0.03 -0.61 9.32 22.81 0.21 -0.40 16 17 C -0.15 -2.98 5.87 -20.13 -0.12 -3.10 16 18 C 0.54 10.10 8.26 70.27 0.58 10.69 16 19 O -0.55 -14.09 17.12 19.82 0.34 -13.75 16 20 O -0.50 -5.39 12.66 -56.56 -0.72 -6.11 16 21 C -0.03 -0.45 9.60 22.56 0.22 -0.24 16 22 C -0.16 -2.63 9.95 22.29 0.22 -2.41 16 23 C 0.16 3.78 6.72 22.91 0.15 3.93 16 24 O -0.49 -12.94 11.35 -89.64 -1.02 -13.96 16 25 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 26 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.37 15.20 8.60 -213.32 -1.83 13.36 16 30 H 0.12 3.32 8.02 -2.91 -0.02 3.29 16 31 H 0.14 3.18 7.64 -2.91 -0.02 3.16 16 32 H 0.43 0.88 9.11 -74.06 -0.67 0.20 16 33 H 0.17 1.53 7.59 -2.91 -0.02 1.50 16 34 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 35 H 0.41 8.03 9.06 -74.05 -0.67 7.35 16 Total: -1.00 -72.63 315.99 0.77 -71.86 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -2.04 Total: 21.59 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 3.60 Total: -12.20 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -1.24 Total: -92.95 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -1.39 Total: -33.81 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.85 Total: 45.51 kcal Total: -72.63 0.77 -71.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827218763.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.651 kcal (2) G-P(sol) polarization free energy of solvation -72.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds