Wall clock time and date at job start Tue Mar 31 2020 01:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 89.99935 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00326 * 8 6 4 11 11 H 1.48498 * 109.47096 * 330.00479 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 N 1.40105 * 119.99660 * 89.99925 * 12 2 1 14 14 C 1.29742 * 119.99724 * 180.02562 * 13 12 2 15 15 C 1.47465 * 120.00006 * 179.97438 * 14 13 12 16 16 C 1.39219 * 120.11463 * 179.72126 * 15 14 13 17 17 C 1.39504 * 119.74539 * 179.81570 * 16 15 14 18 18 C 1.47498 * 120.01866 * 180.20897 * 17 16 15 19 19 O 1.21501 * 119.99937 * 0.22942 * 18 17 16 20 20 O 1.34745 * 120.00035 * 180.23896 * 18 17 16 21 21 C 1.39901 * 119.96119 * 0.44193 * 17 16 15 22 22 C 1.37769 * 120.22837 * 359.78766 * 21 17 16 23 23 C 1.38772 * 120.25900 * 0.02562 * 22 21 17 24 24 O 1.35639 * 119.98383 * 179.97438 * 23 22 21 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 29 29 H 0.96998 * 120.00160 * 270.00687 * 12 2 1 30 30 H 1.08007 * 119.99996 * 0.02562 * 14 13 12 31 31 H 1.08004 * 120.12306 * 0.02562 * 16 15 14 32 32 H 0.96699 * 117.00018 * 180.02562 * 20 18 17 33 33 H 1.07997 * 119.88491 * 179.77029 * 21 17 16 34 34 H 1.08000 * 119.87474 * 179.97438 * 22 21 17 35 35 H 0.96702 * 114.00030 * 270.02183 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.6297 -0.5457 4.4124 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5660 3.7121 12 7 2.0184 -0.6906 -1.1961 13 7 2.2519 0.0299 -2.3747 14 6 2.6840 -0.5818 -3.4342 15 6 2.9292 0.1765 -4.6749 16 6 3.3984 -0.4765 -5.8115 17 6 3.6241 0.2477 -6.9822 18 6 4.1167 -0.4388 -8.1912 19 8 4.3221 -1.6361 -8.1688 20 8 4.3392 0.2619 -9.3204 21 6 3.3876 1.6264 -7.0076 22 6 2.9279 2.2720 -5.8807 23 6 2.6965 1.5601 -4.7122 24 8 2.2444 2.2015 -3.6059 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7081 1.1610 3.4844 29 1 2.1800 -1.6468 -1.1721 30 1 2.8632 -1.6465 -3.4076 31 1 3.5836 -1.5403 -5.7878 32 1 4.6615 -0.2316 -10.0870 33 1 3.5663 2.1864 -7.9135 34 1 2.7476 3.3366 -5.9065 35 1 2.9461 2.5354 -3.0304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827218767.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:13 Heat of formation + Delta-G solvation = -63.562728 kcal Electronic energy + Delta-G solvation = -20314.389841 eV Core-core repulsion = 16892.756207 eV Total energy + Delta-G solvation = -3421.633634 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.56659 -39.35672 -36.52459 -36.40229 -36.15859 -34.14867 -32.06406 -30.65437 -30.14355 -27.19429 -25.26964 -24.43759 -23.33621 -21.77188 -20.55715 -20.09103 -18.32947 -18.04147 -17.40716 -16.83775 -16.05614 -15.80266 -15.27785 -15.14057 -14.71521 -14.57942 -13.84758 -13.69252 -13.25930 -12.78080 -12.65744 -12.48234 -12.15695 -11.98402 -11.74147 -11.48619 -11.07354 -10.92806 -10.81960 -10.66719 -10.52739 -10.27640 -10.24497 -9.46215 -9.18248 -9.00818 -8.81186 -8.53369 -6.88311 -6.17884 -4.26630 0.52414 1.05183 2.27209 2.80917 3.00228 3.21462 3.28209 3.30391 3.71695 3.78373 4.29731 4.33209 4.71399 4.78623 5.01824 5.10322 5.14727 5.32956 5.66935 5.74106 5.97160 6.02353 6.12278 6.25479 6.41937 6.55453 6.70338 6.91025 6.98739 7.12008 7.53115 7.69372 7.72417 7.81999 7.87379 8.08924 8.24465 8.80557 9.23990 9.40467 10.87828 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036055 B = 0.003134 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.396252 B = 8930.818204 C = 9401.313501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.298 3.702 3 H 0.043 0.957 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.619 5.619 13 N -0.164 5.164 14 C -0.030 4.030 15 C -0.043 4.043 16 C -0.033 4.033 17 C -0.145 4.145 18 C 0.531 3.469 19 O -0.518 6.518 20 O -0.514 6.514 21 C -0.055 4.055 22 C -0.162 4.162 23 C 0.165 3.835 24 O -0.471 6.471 25 H 0.025 0.975 26 H 0.014 0.986 27 H 0.090 0.910 28 H 0.265 0.735 29 H 0.368 0.632 30 H 0.105 0.895 31 H 0.141 0.859 32 H 0.412 0.588 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.711 2.117 -18.719 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.196 3.804 3 H 0.061 0.939 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.355 5.355 13 N 0.022 4.978 14 C -0.236 4.236 15 C -0.046 4.046 16 C -0.054 4.054 17 C -0.146 4.146 18 C 0.376 3.624 19 O -0.407 6.407 20 O -0.326 6.326 21 C -0.075 4.075 22 C -0.181 4.181 23 C 0.117 3.883 24 O -0.282 6.282 25 H 0.044 0.956 26 H 0.033 0.967 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.205 0.795 30 H 0.122 0.878 31 H 0.159 0.841 32 H 0.271 0.729 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 4.628 2.980 -17.825 18.655 hybrid contribution 1.148 -1.952 0.380 2.296 sum 5.775 1.027 -17.445 18.405 Atomic orbital electron populations 1.22203 0.98901 0.99216 1.00697 1.18556 0.90236 0.93522 0.78098 0.93892 1.21238 1.32376 1.13371 0.90231 0.92208 1.24852 0.94765 0.94999 0.98956 1.69888 1.35842 1.22545 1.23979 0.86425 0.78602 0.79887 0.82069 1.20518 1.20994 1.19875 1.49254 1.71342 1.07952 1.06941 1.74132 1.02394 1.27559 0.93760 1.23247 1.11443 0.96887 0.92064 1.18747 1.00376 0.92661 0.92774 1.21119 0.94472 1.00296 0.89540 1.18783 1.09757 0.94282 0.91808 1.20854 0.73702 0.84802 0.83020 1.90897 1.49211 1.16031 1.84606 1.84566 1.79428 1.45972 1.22617 1.21233 0.95235 0.92718 0.98310 1.21375 1.02727 1.00978 0.92980 1.18938 0.91743 0.89720 0.87943 1.84756 1.35274 1.74693 1.33476 0.95583 0.96651 0.89132 0.92511 0.79549 0.87788 0.84089 0.72934 0.84439 0.84546 0.74444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.29 37.16 0.35 -3.35 16 2 C 0.30 7.41 3.23 -69.08 -0.22 7.18 16 3 H 0.04 1.17 8.14 -51.93 -0.42 0.75 16 4 C -0.53 -14.05 8.74 -34.44 -0.30 -14.35 16 5 H 0.06 1.55 7.79 -52.49 -0.41 1.14 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.28 11.32 55.43 0.63 -23.65 16 8 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.62 -13.33 6.10 -5.88 -0.04 -13.36 16 13 N -0.16 -3.20 9.33 32.16 0.30 -2.90 16 14 C -0.03 -0.49 10.75 -14.68 -0.16 -0.65 16 15 C -0.04 -0.61 5.87 -104.98 -0.62 -1.23 16 16 C -0.03 -0.42 9.32 -38.75 -0.36 -0.78 16 17 C -0.15 -1.67 5.87 -105.03 -0.62 -2.29 16 18 C 0.53 5.89 8.26 34.50 0.29 6.17 16 19 O -0.52 -7.17 17.12 -19.27 -0.33 -7.50 16 20 O -0.51 -3.92 12.66 -40.61 -0.51 -4.43 16 21 C -0.06 -0.56 9.60 -39.13 -0.38 -0.93 16 22 C -0.16 -1.76 9.95 -39.56 -0.39 -2.15 16 23 C 0.16 2.24 6.72 -38.59 -0.26 1.98 16 24 O -0.47 -7.00 11.35 -18.62 -0.21 -7.21 16 25 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 28 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.37 7.42 8.58 -182.60 -1.57 5.85 16 30 H 0.10 1.56 8.02 -52.48 -0.42 1.14 16 31 H 0.14 1.70 7.64 -52.48 -0.40 1.30 16 32 H 0.41 1.29 9.11 45.56 0.42 1.70 16 33 H 0.14 1.07 7.59 -52.49 -0.40 0.67 16 34 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 35 H 0.40 4.72 9.06 45.56 0.41 5.13 16 LS Contribution 316.30 15.07 4.77 4.77 Total: -1.00 -31.29 316.30 -6.70 -37.98 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -3.51 Total: 9.54 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -2.77 Total: -8.69 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.89 Total: -39.91 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -1.06 Total: -19.15 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.29 -6.70 -37.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827218767.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.578 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds