Wall clock time and date at job start Tue Mar 31 2020 01:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46748 * 2 1 4 4 C 1.53000 * 109.47482 * 119.99580 * 2 1 3 5 5 C 1.50695 * 109.47310 * 295.00353 * 4 2 1 6 6 O 1.20823 * 120.00130 * 359.97438 * 5 4 2 7 7 O 1.34230 * 120.00134 * 179.97438 * 5 4 2 8 8 C 1.50702 * 109.47097 * 240.00370 * 2 1 3 9 9 O 1.21278 * 119.99613 * 239.99794 * 8 2 1 10 10 N 1.34776 * 120.00038 * 59.99482 * 8 2 1 11 11 C 1.39477 * 119.99638 * 175.18416 * 10 8 2 12 12 C 1.38593 * 119.57503 * 185.05094 * 11 10 8 13 13 C 1.40813 * 118.79170 * 179.78615 * 12 11 10 14 14 C 1.41539 * 120.99892 * 180.26101 * 13 12 11 15 15 H 1.07998 * 120.00238 * 203.78997 * 14 13 12 16 16 C 1.40030 * 119.99937 * 23.78613 * 14 13 12 17 17 N 1.30746 * 120.00132 * 17.17005 * 16 14 13 18 18 Si 1.86800 * 120.00328 * 197.16815 * 16 14 13 19 19 H 1.48497 * 109.47017 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47146 * 119.99969 * 18 16 14 21 21 H 1.48498 * 109.47356 * 240.00042 * 18 16 14 22 22 C 1.41180 * 118.00455 * 0.48144 * 13 12 11 23 23 C 1.37586 * 119.01585 * 359.75488 * 22 13 12 24 24 N 1.32078 * 121.10909 * 0.02562 * 23 22 13 25 25 H 1.08999 * 109.47292 * 299.99571 * 1 2 3 26 26 H 1.08996 * 109.47121 * 60.00199 * 1 2 3 27 27 H 1.09005 * 109.46748 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46603 * 55.00650 * 4 2 1 29 29 H 1.09003 * 109.46876 * 174.99895 * 4 2 1 30 30 H 0.96698 * 117.00381 * 180.02562 * 7 5 4 31 31 H 0.96989 * 120.00061 * 355.19252 * 10 8 2 32 32 H 1.07993 * 120.60770 * 0.02562 * 12 11 10 33 33 H 0.96998 * 120.00242 * 180.02562 * 17 16 14 34 34 H 1.08006 * 120.48873 * 179.78213 * 22 13 12 35 35 H 1.08002 * 119.44259 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.6414 0.0571 2.4766 6 8 1.0141 1.0836 2.3637 7 8 1.9832 -0.3899 3.6952 8 6 2.0323 -0.7103 -1.2305 9 8 2.7296 -1.6964 -1.1192 10 7 1.7066 -0.2499 -2.4546 11 6 2.2522 -0.8456 -3.5916 12 6 1.9953 -0.3004 -4.8397 13 6 2.5581 -0.9126 -5.9760 14 6 2.3308 -0.3918 -7.2724 15 1 2.4198 -1.0345 -8.1358 16 6 1.9905 0.9567 -7.4354 17 7 2.2043 1.8068 -6.4654 18 14 1.2311 1.5411 -9.0389 19 1 1.0936 0.3919 -9.9693 20 1 -0.1086 2.1222 -8.7693 21 1 2.1041 2.5738 -9.6527 22 6 3.3520 -2.0641 -5.7840 23 6 3.5466 -2.5350 -4.5059 24 7 3.0042 -1.9288 -3.4654 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6055 -1.7198 1.2951 29 1 3.1264 -0.7993 1.2055 30 1 1.7048 0.1431 4.4524 31 1 1.0930 0.4958 -2.5448 32 1 1.3779 0.5801 -4.9385 33 1 1.9683 2.7409 -6.5782 34 1 3.8002 -2.5676 -6.6278 35 1 4.1530 -3.4151 -4.3511 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827303503.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:24 Heat of formation + Delta-G solvation = -100.536301 kcal Electronic energy + Delta-G solvation = -20891.482988 eV Core-core repulsion = 17468.246060 eV Total energy + Delta-G solvation = -3423.236928 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.64365 -39.62050 -37.94112 -36.42101 -34.44254 -34.14667 -33.72442 -30.57204 -29.06173 -28.01033 -26.02260 -24.44620 -22.19644 -21.92345 -20.64669 -19.31642 -18.37461 -17.69982 -17.30288 -16.24008 -16.15525 -15.51171 -15.22566 -14.98955 -14.24336 -14.01790 -13.80210 -13.76012 -13.22062 -12.85296 -12.68331 -12.62257 -12.35970 -12.16449 -11.55594 -11.48707 -11.33790 -11.23779 -11.14951 -10.92077 -10.61066 -10.29925 -10.16717 -9.77787 -9.39046 -9.33446 -8.03239 -7.75150 -7.06283 -6.84574 -4.63786 2.04211 2.51285 2.74975 2.79278 3.00326 3.05590 3.16848 3.42638 3.70633 3.82742 4.46377 4.63237 4.86280 4.94813 5.19941 5.34627 5.50832 5.58168 5.66620 5.78263 5.92511 6.00159 6.12464 6.37172 6.56130 6.62616 6.78430 6.91973 7.07415 7.36355 7.43054 7.71304 7.74186 7.90027 8.18562 8.39297 8.67121 8.71656 8.83990 9.66260 10.03073 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027912 B = 0.003840 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.929794 B = 7290.246724 C = 8094.789454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 H 0.105 0.895 4 C -0.096 4.096 5 C 0.482 3.518 6 O -0.515 6.515 7 O -0.517 6.517 8 C 0.505 3.495 9 O -0.483 6.483 10 N -0.655 5.655 11 C 0.336 3.664 12 C -0.244 4.244 13 C 0.143 3.857 14 C -0.455 4.455 15 H 0.083 0.917 16 C 0.078 3.922 17 N -0.786 5.786 18 Si 0.911 3.089 19 H -0.259 1.259 20 H -0.271 1.271 21 H -0.273 1.273 22 C -0.285 4.285 23 C 0.119 3.881 24 N -0.555 5.555 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.408 0.592 31 H 0.408 0.592 32 H 0.127 0.873 33 H 0.282 0.718 34 H 0.102 0.898 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.810 0.783 11.850 12.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.122 4.122 3 H 0.123 0.877 4 C -0.133 4.133 5 C 0.325 3.675 6 O -0.404 6.404 7 O -0.329 6.329 8 C 0.289 3.711 9 O -0.354 6.354 10 N -0.300 5.300 11 C 0.111 3.889 12 C -0.269 4.269 13 C 0.135 3.865 14 C -0.486 4.486 15 H 0.101 0.899 16 C -0.141 4.141 17 N -0.411 5.411 18 Si 0.735 3.265 19 H -0.183 1.183 20 H -0.196 1.196 21 H -0.199 1.199 22 C -0.309 4.309 23 C -0.035 4.035 24 N -0.274 5.274 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.267 0.733 31 H 0.243 0.757 32 H 0.145 0.855 33 H 0.093 0.907 34 H 0.120 0.880 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.209 0.025 12.543 12.947 hybrid contribution -0.909 1.595 -1.154 2.169 sum -4.118 1.620 11.389 12.218 Atomic orbital electron populations 1.21939 0.92454 1.02716 1.03871 1.21121 0.98295 1.01093 0.91721 0.87675 1.21135 1.05071 0.99885 0.87252 1.23567 0.75416 0.83767 0.84745 1.90693 1.37723 1.24881 1.87075 1.84561 1.74816 1.56406 1.17096 1.20386 0.81376 0.85149 0.84149 1.90784 1.34930 1.23823 1.85822 1.43397 1.46860 1.35276 1.04504 1.18188 0.94378 0.91620 0.84664 1.21532 1.09395 1.05786 0.90202 1.17567 0.86584 0.89339 0.93005 1.19613 1.41234 0.94481 0.93269 0.89904 1.25967 0.92898 0.96703 0.98533 1.69788 1.33893 1.04253 1.33213 0.86218 0.79333 0.79373 0.81599 1.18260 1.19590 1.19869 1.21895 1.08279 1.03842 0.96862 1.21758 0.96345 0.97167 0.88242 1.67211 1.16035 1.10482 1.33709 0.90155 0.91699 0.92227 0.86783 0.86543 0.73330 0.75661 0.85506 0.90719 0.87988 0.85877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.83 37.16 0.33 -1.43 16 2 C -0.10 -1.31 2.38 -91.77 -0.22 -1.53 16 3 H 0.11 1.31 7.96 -51.93 -0.41 0.90 16 4 C -0.10 -1.10 4.63 -27.89 -0.13 -1.23 16 5 C 0.48 5.19 8.05 36.00 0.29 5.48 16 6 O -0.52 -6.66 14.73 -18.75 -0.28 -6.93 16 7 O -0.52 -4.34 13.42 -39.26 -0.53 -4.87 16 8 C 0.51 9.07 7.11 -10.98 -0.08 9.00 16 9 O -0.48 -10.46 14.18 5.56 0.08 -10.38 16 10 N -0.65 -12.56 5.31 -11.49 -0.06 -12.62 16 11 C 0.34 8.04 7.42 -154.70 -1.15 6.89 16 12 C -0.24 -6.11 8.62 -38.48 -0.33 -6.44 16 13 C 0.14 3.73 5.60 -106.55 -0.60 3.14 16 14 C -0.45 -11.58 9.12 -37.65 -0.34 -11.92 16 15 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 16 C 0.08 1.87 5.19 -17.34 -0.09 1.78 16 17 N -0.79 -19.17 10.94 55.55 0.61 -18.56 16 18 Si 0.91 17.69 29.59 -169.99 -5.03 12.66 16 19 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 20 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 C -0.28 -6.94 9.90 -38.70 -0.38 -7.32 16 23 C 0.12 2.83 11.15 -17.68 -0.20 2.63 16 24 N -0.56 -13.96 7.85 -12.52 -0.10 -14.06 16 25 H 0.08 0.92 5.96 -51.93 -0.31 0.61 16 26 H 0.06 0.70 7.46 -51.93 -0.39 0.32 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.11 1.26 8.14 -51.92 -0.42 0.84 16 29 H 0.12 1.37 7.96 -51.93 -0.41 0.95 16 30 H 0.41 1.62 9.10 45.56 0.41 2.03 16 31 H 0.41 6.53 7.98 -40.82 -0.33 6.20 16 32 H 0.13 3.16 6.21 -52.49 -0.33 2.83 16 33 H 0.28 6.19 8.29 -40.82 -0.34 5.85 16 34 H 0.10 2.28 8.06 -52.48 -0.42 1.85 16 35 H 0.12 2.55 8.06 -52.49 -0.42 2.13 16 LS Contribution 306.57 15.07 4.62 4.62 Total: -1.00 -32.37 306.57 -6.58 -38.95 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -3.00 Total: 12.16 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -2.90 Total: -0.97 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.45 Total: -45.25 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.72 Total: -22.18 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.37 -6.58 -38.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827303503.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.585 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds