Wall clock time and date at job start Tue Mar 31 2020 01:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46748 * 2 1 4 4 C 1.53000 * 109.47482 * 119.99580 * 2 1 3 5 5 C 1.50695 * 109.47310 * 295.00353 * 4 2 1 6 6 O 1.20823 * 120.00130 * 359.97438 * 5 4 2 7 7 O 1.34230 * 120.00134 * 179.97438 * 5 4 2 8 8 C 1.50702 * 109.47097 * 240.00370 * 2 1 3 9 9 O 1.21278 * 119.99613 * 239.99794 * 8 2 1 10 10 N 1.34776 * 120.00038 * 59.99482 * 8 2 1 11 11 C 1.39477 * 119.99638 * 175.18416 * 10 8 2 12 12 C 1.38593 * 119.57503 * 185.05094 * 11 10 8 13 13 C 1.40813 * 118.79170 * 179.78615 * 12 11 10 14 14 C 1.41539 * 120.99892 * 180.26101 * 13 12 11 15 15 H 1.07998 * 120.00238 * 203.78997 * 14 13 12 16 16 C 1.40030 * 119.99937 * 23.78613 * 14 13 12 17 17 N 1.30746 * 120.00132 * 17.17005 * 16 14 13 18 18 Si 1.86800 * 120.00328 * 197.16815 * 16 14 13 19 19 H 1.48497 * 109.47017 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47146 * 119.99969 * 18 16 14 21 21 H 1.48498 * 109.47356 * 240.00042 * 18 16 14 22 22 C 1.41180 * 118.00455 * 0.48144 * 13 12 11 23 23 C 1.37586 * 119.01585 * 359.75488 * 22 13 12 24 24 N 1.32078 * 121.10909 * 0.02562 * 23 22 13 25 25 H 1.08999 * 109.47292 * 299.99571 * 1 2 3 26 26 H 1.08996 * 109.47121 * 60.00199 * 1 2 3 27 27 H 1.09005 * 109.46748 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46603 * 55.00650 * 4 2 1 29 29 H 1.09003 * 109.46876 * 174.99895 * 4 2 1 30 30 H 0.96698 * 117.00381 * 180.02562 * 7 5 4 31 31 H 0.96989 * 120.00061 * 355.19252 * 10 8 2 32 32 H 1.07993 * 120.60770 * 0.02562 * 12 11 10 33 33 H 0.96998 * 120.00242 * 180.02562 * 17 16 14 34 34 H 1.08006 * 120.48873 * 179.78213 * 22 13 12 35 35 H 1.08002 * 119.44259 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.6414 0.0571 2.4766 6 8 1.0141 1.0836 2.3637 7 8 1.9832 -0.3899 3.6952 8 6 2.0323 -0.7103 -1.2305 9 8 2.7296 -1.6964 -1.1192 10 7 1.7066 -0.2499 -2.4546 11 6 2.2522 -0.8456 -3.5916 12 6 1.9953 -0.3004 -4.8397 13 6 2.5581 -0.9126 -5.9760 14 6 2.3308 -0.3918 -7.2724 15 1 2.4198 -1.0345 -8.1358 16 6 1.9905 0.9567 -7.4354 17 7 2.2043 1.8068 -6.4654 18 14 1.2311 1.5411 -9.0389 19 1 1.0936 0.3919 -9.9693 20 1 -0.1086 2.1222 -8.7693 21 1 2.1041 2.5738 -9.6527 22 6 3.3520 -2.0641 -5.7840 23 6 3.5466 -2.5350 -4.5059 24 7 3.0042 -1.9288 -3.4654 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6055 -1.7198 1.2951 29 1 3.1264 -0.7993 1.2055 30 1 1.7048 0.1431 4.4524 31 1 1.0930 0.4958 -2.5448 32 1 1.3779 0.5801 -4.9385 33 1 1.9683 2.7409 -6.5782 34 1 3.8002 -2.5676 -6.6278 35 1 4.1530 -3.4151 -4.3511 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827303503.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:23 Heat of formation + Delta-G solvation = -122.009478 kcal Electronic energy + Delta-G solvation = -20892.414135 eV Core-core repulsion = 17468.246060 eV Total energy + Delta-G solvation = -3424.168075 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.69948 -41.00563 -39.62982 -37.23999 -36.16755 -35.54181 -35.20515 -32.45453 -30.61068 -29.17838 -27.90933 -25.64865 -23.85274 -23.42091 -22.03120 -20.71678 -19.46439 -19.29664 -18.41227 -17.75725 -17.08185 -17.03080 -16.76726 -16.27387 -16.06675 -15.66884 -15.28870 -15.00546 -14.54584 -14.35639 -14.21711 -13.88594 -13.64773 -13.25736 -13.18401 -12.92244 -12.66208 -12.40176 -12.30824 -12.18724 -12.03711 -11.90633 -11.52104 -11.48956 -11.14698 -10.89470 -9.94999 -9.59300 -8.86886 -8.65213 -6.56238 0.73917 0.99556 1.20340 1.41780 1.53304 1.57009 1.83416 1.86376 2.20269 2.41526 2.80080 3.42656 3.70446 3.74441 3.89323 4.17761 4.30732 4.48265 4.58390 4.65469 4.76199 4.84997 4.88510 4.92970 4.99945 5.09010 5.22107 5.22609 5.48775 5.64259 5.66485 5.90669 6.13558 6.46110 6.60005 6.79655 6.83018 7.02378 7.27500 7.83319 8.25573 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027912 B = 0.003840 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.929794 B = 7290.246724 C = 8094.789454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 H 0.115 0.885 4 C -0.096 4.096 5 C 0.495 3.505 6 O -0.538 6.538 7 O -0.512 6.512 8 C 0.505 3.495 9 O -0.520 6.520 10 N -0.650 5.650 11 C 0.333 3.667 12 C -0.262 4.262 13 C 0.114 3.886 14 C -0.484 4.484 15 H 0.083 0.917 16 C 0.041 3.959 17 N -0.810 5.810 18 Si 0.987 3.013 19 H -0.258 1.258 20 H -0.262 1.262 21 H -0.266 1.266 22 C -0.300 4.300 23 C 0.114 3.886 24 N -0.577 5.577 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.430 0.570 31 H 0.422 0.578 32 H 0.123 0.877 33 H 0.293 0.707 34 H 0.115 0.885 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.585 1.582 12.301 13.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 H 0.133 0.867 4 C -0.134 4.134 5 C 0.339 3.661 6 O -0.428 6.428 7 O -0.326 6.326 8 C 0.292 3.708 9 O -0.393 6.393 10 N -0.297 5.297 11 C 0.108 3.892 12 C -0.288 4.288 13 C 0.106 3.894 14 C -0.515 4.515 15 H 0.101 0.899 16 C -0.177 4.177 17 N -0.436 5.436 18 Si 0.807 3.193 19 H -0.182 1.182 20 H -0.186 1.186 21 H -0.191 1.191 22 C -0.324 4.324 23 C -0.039 4.039 24 N -0.297 5.297 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.292 0.708 31 H 0.259 0.741 32 H 0.141 0.859 33 H 0.104 0.896 34 H 0.133 0.867 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.993 0.838 13.048 13.671 hybrid contribution -0.618 1.333 -1.203 1.899 sum -4.611 2.171 11.845 12.895 Atomic orbital electron populations 1.21924 0.90996 1.03027 1.04533 1.21039 0.99264 1.00842 0.89649 0.86682 1.21073 1.04935 1.00135 0.87255 1.23170 0.74797 0.83009 0.85137 1.90695 1.38886 1.25751 1.87499 1.84503 1.74346 1.56643 1.17093 1.21231 0.80244 0.84617 0.84757 1.90760 1.36542 1.25658 1.86356 1.43456 1.46864 1.35453 1.03948 1.18442 0.93705 0.91206 0.85883 1.21516 1.10321 1.06170 0.90743 1.17998 0.87233 0.90300 0.93852 1.19891 1.42722 0.95678 0.93188 0.89851 1.26816 0.92551 0.96137 1.02179 1.69814 1.33627 1.05027 1.35083 0.85085 0.78576 0.78742 0.76893 1.18192 1.18601 1.19077 1.22082 1.08679 1.03942 0.97688 1.22222 0.96060 0.97718 0.87928 1.67347 1.16925 1.11219 1.34225 0.89462 0.91043 0.92117 0.86314 0.86819 0.70832 0.74061 0.85923 0.89633 0.86708 0.83185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.83 71.98 0.64 -2.52 16 2 C -0.09 -2.14 2.38 -11.54 -0.03 -2.17 16 3 H 0.12 2.68 7.96 -2.38 -0.02 2.66 16 4 C -0.10 -2.08 4.63 29.85 0.14 -1.95 16 5 C 0.50 9.63 8.05 71.23 0.57 10.21 16 6 O -0.54 -12.77 14.73 21.97 0.32 -12.45 16 7 O -0.51 -7.31 13.42 -51.41 -0.69 -8.00 16 8 C 0.50 17.91 7.11 87.66 0.62 18.53 16 9 O -0.52 -22.55 14.18 -3.02 -0.04 -22.59 16 10 N -0.65 -24.90 5.31 -308.66 -1.64 -26.54 16 11 C 0.33 16.16 7.42 132.75 0.98 17.14 16 12 C -0.26 -13.41 8.62 22.98 0.20 -13.21 16 13 C 0.11 6.08 5.60 -21.11 -0.12 5.96 16 14 C -0.48 -24.96 9.12 23.52 0.21 -24.74 16 15 H 0.08 4.13 7.90 -2.91 -0.02 4.11 16 16 C 0.04 1.93 5.19 85.29 0.44 2.37 16 17 N -0.81 -39.43 10.94 21.84 0.24 -39.19 16 18 Si 0.99 35.59 29.59 68.60 2.03 37.62 16 19 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 20 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 21 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 22 C -0.30 -14.84 9.90 22.84 0.23 -14.62 16 23 C 0.11 5.47 11.15 84.50 0.94 6.41 16 24 N -0.58 -29.30 7.85 -193.54 -1.52 -30.82 16 25 H 0.09 1.81 5.96 -2.39 -0.01 1.80 16 26 H 0.07 1.42 7.46 -2.39 -0.02 1.41 16 27 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.12 2.47 8.14 -2.38 -0.02 2.45 16 29 H 0.11 2.56 7.96 -2.39 -0.02 2.54 16 30 H 0.43 2.20 9.10 -74.06 -0.67 1.52 16 31 H 0.42 13.33 7.98 -92.72 -0.74 12.59 16 32 H 0.12 6.24 6.21 -2.91 -0.02 6.22 16 33 H 0.29 12.67 8.29 -92.71 -0.77 11.90 16 34 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 35 H 0.15 6.14 8.06 -2.91 -0.02 6.12 16 Total: -1.00 -69.40 306.57 3.27 -66.12 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -0.26 Total: 34.42 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 4.83 Total: 1.43 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -2.92 Total: -96.56 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -0.41 Total: -43.04 kcal Atomic # 14 Polarization: 35.59 SS G_CDS: 2.03 Total: 37.62 kcal Total: -69.40 3.27 -66.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827303503.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.884 kcal (2) G-P(sol) polarization free energy of solvation -69.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds