Wall clock time and date at job start Tue Mar 31 2020 00:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47160 * 2 1 4 4 N 1.46498 * 109.47110 * 180.02562 * 3 2 1 5 5 S 1.65604 * 119.99884 * 165.00061 * 4 3 2 6 6 O 1.42091 * 106.40305 * 311.46103 * 5 4 3 7 7 O 1.42100 * 106.40032 * 178.53928 * 5 4 3 8 8 N 1.65599 * 107.21879 * 65.00242 * 5 4 3 9 9 C 1.47423 * 125.64973 * 270.04297 * 8 5 4 10 10 C 1.54914 * 104.83444 * 204.09009 * 9 8 5 11 11 C 1.55149 * 101.58070 * 322.98864 * 10 9 8 12 12 O 1.42901 * 110.87448 * 277.06815 * 11 10 9 13 13 C 1.50692 * 110.72131 * 153.86496 * 11 10 9 14 14 H 1.08001 * 119.99952 * 245.77357 * 13 11 10 15 15 C 1.37884 * 120.00312 * 65.77106 * 13 11 10 16 16 N 1.31515 * 119.99339 * 354.01137 * 15 13 11 17 17 Si 1.86793 * 120.00252 * 174.00522 * 15 13 11 18 18 H 1.48493 * 109.47332 * 265.18151 * 17 15 13 19 19 H 1.48501 * 109.47165 * 145.17962 * 17 15 13 20 20 H 1.48500 * 109.47230 * 25.18383 * 17 15 13 21 21 C 1.47028 * 125.65132 * 89.99278 * 8 5 4 22 22 H 1.08998 * 109.46797 * 299.99510 * 1 2 3 23 23 H 1.09002 * 109.47360 * 59.99553 * 1 2 3 24 24 H 1.08995 * 109.46843 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46843 * 240.00285 * 2 1 3 26 26 H 1.09002 * 109.47360 * 120.00447 * 2 1 3 27 27 H 1.08998 * 109.46865 * 60.00532 * 3 2 1 28 28 H 1.09002 * 109.47349 * 300.00454 * 3 2 1 29 29 H 0.96996 * 120.00417 * 345.00298 * 4 3 2 30 30 H 1.09006 * 110.36543 * 322.92925 * 9 8 5 31 31 H 1.09004 * 110.37131 * 85.25014 * 9 8 5 32 32 H 1.09003 * 111.00223 * 204.91629 * 10 9 8 33 33 H 1.08993 * 110.99856 * 81.06356 * 10 9 8 34 34 H 0.96697 * 113.99918 * 302.90142 * 12 11 10 35 35 H 0.96998 * 119.99661 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.87705 * 59.56322 * 21 8 5 37 37 H 1.08997 * 110.01094 * 298.47597 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 16 4.3329 2.8278 -0.3719 6 8 3.7514 3.3352 -1.5650 7 8 5.7137 2.5143 -0.2526 8 7 3.9996 3.9316 0.8167 9 6 2.8856 4.8971 0.8049 10 6 3.3459 6.0452 1.7375 11 6 4.1039 5.2637 2.8429 12 8 3.1948 4.7545 3.8209 13 6 5.1483 6.1352 3.4913 14 1 6.1958 5.8983 3.3775 15 6 4.7666 7.2353 4.2299 16 7 3.5016 7.5924 4.2717 17 14 6.0462 8.2181 5.1710 18 1 6.1077 7.7354 6.5740 19 1 5.6742 9.6557 5.1580 20 1 7.3741 8.0447 4.5293 21 6 4.7650 4.1103 2.0593 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.6768 1.9562 0.8900 28 1 1.6767 1.9564 -0.8899 29 1 3.9901 0.6311 0.2164 30 1 2.7194 5.2722 -0.2050 31 1 1.9781 4.4342 1.1926 32 1 2.4904 6.5782 2.1526 33 1 4.0141 6.7292 1.2145 34 1 2.6495 5.4330 4.2419 35 1 3.2331 8.3664 4.7909 36 1 5.7983 4.3661 1.8245 37 1 4.7351 3.1952 2.6507 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828045070.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:11 Heat of formation + Delta-G solvation = -136.858941 kcal Electronic energy + Delta-G solvation = -20951.643478 eV Core-core repulsion = 17662.275434 eV Total energy + Delta-G solvation = -3289.368045 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -38.06076 -36.99945 -36.30828 -35.55484 -34.29323 -32.18975 -32.17466 -29.13096 -28.29939 -25.72145 -24.82230 -21.83281 -21.61738 -19.83360 -19.03114 -17.73454 -17.07732 -16.90356 -16.27697 -15.43073 -14.96874 -14.87502 -14.45729 -14.20668 -13.34505 -13.22506 -13.09905 -12.86110 -12.64884 -12.16660 -12.04945 -11.86264 -11.80149 -11.63202 -11.60188 -11.30227 -11.15210 -11.09114 -11.01000 -10.85453 -10.45621 -10.41675 -10.10453 -9.49164 -9.34562 -8.67325 -8.44269 -8.17867 -6.27110 -4.32991 0.88692 3.19281 3.21666 3.29429 3.33619 3.84647 4.28328 4.54958 4.75636 4.84785 5.00496 5.02895 5.34769 5.40909 5.49968 5.52502 5.79983 5.81267 5.84729 5.96800 6.00706 6.01499 6.14013 6.21921 6.37386 6.63957 6.81817 6.93148 6.96557 7.13817 7.35188 7.38563 7.75609 8.06408 8.68415 9.32134 9.38838 10.80753 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026945 B = 0.005189 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.901422 B = 5394.727354 C = 5884.254820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.117 3.883 4 N -1.132 6.132 5 S 2.802 3.198 6 O -0.984 6.984 7 O -0.982 6.982 8 N -1.013 6.013 9 C 0.114 3.886 10 C -0.130 4.130 11 C 0.250 3.750 12 O -0.584 6.584 13 C -0.536 4.536 14 H 0.065 0.935 15 C 0.074 3.926 16 N -0.895 5.895 17 Si 0.902 3.098 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.137 3.863 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.412 0.588 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.380 0.620 35 H 0.267 0.733 36 H 0.073 0.927 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.728 -10.462 -6.155 13.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C -0.009 4.009 4 N -0.892 5.892 5 S 2.811 3.189 6 O -0.968 6.968 7 O -0.966 6.966 8 N -0.855 5.855 9 C -0.011 4.011 10 C -0.170 4.170 11 C 0.209 3.791 12 O -0.393 6.393 13 C -0.574 4.574 14 H 0.083 0.917 15 C -0.129 4.129 16 N -0.535 5.535 17 Si 0.729 3.271 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.197 1.197 21 C 0.012 3.988 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.245 0.755 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.230 0.770 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.095 -10.659 -7.154 13.811 hybrid contribution 0.311 0.694 1.170 1.395 sum -4.784 -9.965 -5.984 12.570 Atomic orbital electron populations 1.21722 0.94878 1.01979 1.02427 1.21700 0.96541 0.95886 1.02703 1.21312 0.78910 0.98495 1.02225 1.56085 1.15656 1.28913 1.88496 1.01202 0.72638 0.72168 0.72861 1.93567 1.79517 1.79527 1.44162 1.93594 1.31628 1.84277 1.87092 1.58756 1.41079 1.49353 1.36350 1.22181 0.88110 0.90505 1.00322 1.23298 1.01372 0.95638 0.96715 1.19449 0.87183 0.87432 0.85007 1.86120 1.56006 1.39613 1.57548 1.21566 0.93394 1.09963 1.32483 0.91709 1.24969 0.95739 0.96512 0.95681 1.69715 1.15583 1.27234 1.40934 0.86427 0.81595 0.78833 0.80235 1.20497 1.21152 1.19704 1.21826 0.94660 0.99736 0.82529 0.92178 0.92356 0.92400 0.91385 0.91289 0.91474 0.90627 0.75459 0.91618 0.92607 0.89664 0.91409 0.76981 0.92319 0.90825 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.13 -1.16 6.08 -26.73 -0.16 -1.32 16 3 C 0.12 1.35 6.25 -4.04 -0.03 1.32 16 4 N -1.13 -14.72 6.05 -10.61 -0.06 -14.78 16 5 S 2.80 47.94 6.39 -107.50 -0.69 47.25 16 6 O -0.98 -18.68 16.93 -57.17 -0.97 -19.65 16 7 O -0.98 -19.30 17.72 -57.17 -1.01 -20.31 16 8 N -1.01 -18.98 3.76 -111.41 -0.42 -19.40 16 9 C 0.11 2.10 7.10 -2.53 -0.02 2.08 16 10 C -0.13 -2.82 5.54 -24.58 -0.14 -2.96 16 11 C 0.25 5.91 0.84 -89.94 -0.08 5.83 16 12 O -0.58 -14.07 13.04 -35.23 -0.46 -14.53 16 13 C -0.54 -13.89 8.20 -34.44 -0.28 -14.17 16 14 H 0.06 1.68 7.54 -52.49 -0.40 1.29 16 15 C 0.07 1.88 5.30 -17.82 -0.09 1.79 16 16 N -0.90 -22.83 10.78 55.43 0.60 -22.24 16 17 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 C 0.14 2.91 6.34 -3.06 -0.02 2.89 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.89 7.75 -51.93 -0.40 0.48 16 29 H 0.41 4.49 8.65 -34.47 -0.30 4.20 16 30 H 0.07 1.13 7.78 -51.93 -0.40 0.73 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.08 1.90 7.61 -51.93 -0.39 1.50 16 33 H 0.07 1.53 8.04 -51.93 -0.42 1.11 16 34 H 0.38 9.20 7.45 45.56 0.34 9.54 16 35 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 36 H 0.07 1.59 7.63 -51.93 -0.40 1.20 16 37 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 LS Contribution 316.92 15.07 4.78 4.78 Total: -1.00 -29.78 316.92 -8.59 -38.37 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -4.88 Total: 10.67 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -0.44 Total: -5.37 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.11 Total: -56.42 kcal Atomic # 8 Polarization: -52.05 SS G_CDS: -2.44 Total: -54.49 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 47.94 SS G_CDS: -0.69 Total: 47.25 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.78 -8.59 -38.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828045070.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.493 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds