Wall clock time and date at job start Tue Mar 31 2020 00:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47160 * 2 1 4 4 N 1.46498 * 109.47110 * 180.02562 * 3 2 1 5 5 S 1.65604 * 119.99884 * 165.00061 * 4 3 2 6 6 O 1.42091 * 106.40305 * 311.46103 * 5 4 3 7 7 O 1.42100 * 106.40032 * 178.53928 * 5 4 3 8 8 N 1.65599 * 107.21879 * 65.00242 * 5 4 3 9 9 C 1.47423 * 125.64973 * 270.04297 * 8 5 4 10 10 C 1.54914 * 104.83444 * 204.09009 * 9 8 5 11 11 C 1.55149 * 101.58070 * 322.98864 * 10 9 8 12 12 O 1.42901 * 110.87448 * 277.06815 * 11 10 9 13 13 C 1.50692 * 110.72131 * 153.86496 * 11 10 9 14 14 H 1.08001 * 119.99952 * 245.77357 * 13 11 10 15 15 C 1.37884 * 120.00312 * 65.77106 * 13 11 10 16 16 N 1.31515 * 119.99339 * 354.01137 * 15 13 11 17 17 Si 1.86793 * 120.00252 * 174.00522 * 15 13 11 18 18 H 1.48493 * 109.47332 * 265.18151 * 17 15 13 19 19 H 1.48501 * 109.47165 * 145.17962 * 17 15 13 20 20 H 1.48500 * 109.47230 * 25.18383 * 17 15 13 21 21 C 1.47028 * 125.65132 * 89.99278 * 8 5 4 22 22 H 1.08998 * 109.46797 * 299.99510 * 1 2 3 23 23 H 1.09002 * 109.47360 * 59.99553 * 1 2 3 24 24 H 1.08995 * 109.46843 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46843 * 240.00285 * 2 1 3 26 26 H 1.09002 * 109.47360 * 120.00447 * 2 1 3 27 27 H 1.08998 * 109.46865 * 60.00532 * 3 2 1 28 28 H 1.09002 * 109.47349 * 300.00454 * 3 2 1 29 29 H 0.96996 * 120.00417 * 345.00298 * 4 3 2 30 30 H 1.09006 * 110.36543 * 322.92925 * 9 8 5 31 31 H 1.09004 * 110.37131 * 85.25014 * 9 8 5 32 32 H 1.09003 * 111.00223 * 204.91629 * 10 9 8 33 33 H 1.08993 * 110.99856 * 81.06356 * 10 9 8 34 34 H 0.96697 * 113.99918 * 302.90142 * 12 11 10 35 35 H 0.96998 * 119.99661 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.87705 * 59.56322 * 21 8 5 37 37 H 1.08997 * 110.01094 * 298.47597 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 16 4.3329 2.8278 -0.3719 6 8 3.7514 3.3352 -1.5650 7 8 5.7137 2.5143 -0.2526 8 7 3.9996 3.9316 0.8167 9 6 2.8856 4.8971 0.8049 10 6 3.3459 6.0452 1.7375 11 6 4.1039 5.2637 2.8429 12 8 3.1948 4.7545 3.8209 13 6 5.1483 6.1352 3.4913 14 1 6.1958 5.8983 3.3775 15 6 4.7666 7.2353 4.2299 16 7 3.5016 7.5924 4.2717 17 14 6.0462 8.2181 5.1710 18 1 6.1077 7.7354 6.5740 19 1 5.6742 9.6557 5.1580 20 1 7.3741 8.0447 4.5293 21 6 4.7650 4.1103 2.0593 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.6768 1.9562 0.8900 28 1 1.6767 1.9564 -0.8899 29 1 3.9901 0.6311 0.2164 30 1 2.7194 5.2722 -0.2050 31 1 1.9781 4.4342 1.1926 32 1 2.4904 6.5782 2.1526 33 1 4.0141 6.7292 1.2145 34 1 2.6495 5.4330 4.2419 35 1 3.2331 8.3664 4.7909 36 1 5.7983 4.3661 1.8245 37 1 4.7351 3.1952 2.6507 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828045070.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:11 Heat of formation + Delta-G solvation = -161.036722 kcal Electronic energy + Delta-G solvation = -20952.691906 eV Core-core repulsion = 17662.275434 eV Total energy + Delta-G solvation = -3290.416472 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.76885 -38.43580 -37.27181 -37.02925 -36.05471 -34.14115 -33.03422 -30.83209 -30.01108 -26.70655 -26.55893 -23.20855 -22.61930 -21.59979 -20.39954 -19.33176 -18.68257 -18.41891 -17.49886 -16.86324 -16.36565 -16.27731 -15.98540 -15.86496 -15.00830 -14.64228 -14.06119 -13.95604 -13.77171 -13.72239 -13.64949 -13.41962 -13.33122 -13.24092 -13.09310 -12.79426 -12.64209 -12.47619 -12.24190 -12.18345 -11.94198 -11.93486 -11.73982 -11.17676 -10.62816 -10.52472 -10.08028 -9.95055 -8.21217 -6.33383 -0.49658 1.42623 1.46264 1.54637 1.85906 2.41515 2.50991 3.02726 3.21662 3.77087 3.93025 4.06193 4.11583 4.23619 4.31437 4.43274 4.52030 4.64011 4.67619 4.74103 4.81003 4.96452 5.03088 5.18735 5.21537 5.26700 5.30041 5.35449 5.47744 5.54494 5.58433 5.81458 6.08742 6.15772 6.69495 7.36990 7.43812 8.84902 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026945 B = 0.005189 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.901422 B = 5394.727354 C = 5884.254820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.108 3.892 4 N -1.117 6.117 5 S 2.821 3.179 6 O -1.000 7.000 7 O -1.008 7.008 8 N -1.016 6.016 9 C 0.119 3.881 10 C -0.125 4.125 11 C 0.237 3.763 12 O -0.586 6.586 13 C -0.564 4.564 14 H 0.054 0.946 15 C 0.037 3.963 16 N -0.906 5.906 17 Si 0.955 3.045 18 H -0.277 1.277 19 H -0.281 1.281 20 H -0.275 1.275 21 C 0.143 3.857 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.424 0.576 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.377 0.623 35 H 0.270 0.730 36 H 0.063 0.937 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.414 -11.409 -6.377 14.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.018 4.018 4 N -0.881 5.881 5 S 2.830 3.170 6 O -0.984 6.984 7 O -0.993 6.993 8 N -0.857 5.857 9 C -0.005 4.005 10 C -0.165 4.165 11 C 0.196 3.804 12 O -0.394 6.394 13 C -0.602 4.602 14 H 0.072 0.928 15 C -0.164 4.164 16 N -0.545 5.545 17 Si 0.782 3.218 18 H -0.203 1.203 19 H -0.206 1.206 20 H -0.200 1.200 21 C 0.017 3.983 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.260 0.740 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.227 0.773 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.782 -11.609 -7.378 14.921 hybrid contribution 0.491 0.951 1.228 1.629 sum -5.290 -10.658 -6.150 13.394 Atomic orbital electron populations 1.21731 0.93967 1.02857 1.02434 1.21695 0.97224 0.94022 1.03451 1.21553 0.77535 1.00489 1.02183 1.55712 1.16445 1.27844 1.88062 1.00516 0.71938 0.72317 0.72204 1.93546 1.79689 1.80308 1.44844 1.93555 1.33718 1.84682 1.87301 1.58738 1.40920 1.50404 1.35607 1.22158 0.88509 0.89442 1.00429 1.23111 1.00445 0.96243 0.96717 1.19576 0.87062 0.88395 0.85347 1.86104 1.55973 1.39508 1.57864 1.21838 0.93593 1.11080 1.33685 0.92764 1.25561 0.97393 0.97213 0.96229 1.69773 1.16378 1.27395 1.40934 0.85590 0.79499 0.77769 0.78979 1.20268 1.20615 1.19974 1.21592 0.94202 0.99167 0.83321 0.92396 0.92185 0.91111 0.90595 0.90630 0.91590 0.90695 0.73961 0.90154 0.90678 0.90573 0.93016 0.77350 0.92091 0.91871 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.12 -1.90 6.08 30.59 0.19 -1.72 16 3 C 0.11 2.25 6.25 86.38 0.54 2.79 16 4 N -1.12 -26.79 6.05 -187.50 -1.14 -27.93 16 5 S 2.82 92.93 6.39 -56.49 -0.36 92.56 16 6 O -1.00 -36.48 16.93 -128.00 -2.17 -38.65 16 7 O -1.01 -38.84 17.72 -128.00 -2.27 -41.11 16 8 N -1.02 -37.07 3.76 -506.39 -1.90 -38.97 16 9 C 0.12 4.26 7.10 86.86 0.62 4.87 16 10 C -0.13 -5.42 5.54 31.99 0.18 -5.25 16 11 C 0.24 11.21 0.84 -10.36 -0.01 11.20 16 12 O -0.59 -28.11 13.04 -148.98 -1.94 -30.06 16 13 C -0.56 -29.52 8.20 25.60 0.21 -29.31 16 14 H 0.05 2.87 7.54 -2.91 -0.02 2.85 16 15 C 0.04 1.91 5.30 84.66 0.45 2.36 16 16 N -0.91 -46.07 10.78 21.45 0.23 -45.84 16 17 Si 0.96 41.39 29.54 68.60 2.03 43.41 16 18 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 19 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 C 0.14 6.03 6.34 86.73 0.55 6.58 16 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.59 7.75 -2.39 -0.02 1.57 16 29 H 0.42 8.30 8.65 -96.75 -0.84 7.47 16 30 H 0.08 2.64 7.78 -2.38 -0.02 2.62 16 31 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.08 3.39 7.61 -2.39 -0.02 3.37 16 33 H 0.05 2.35 8.04 -2.39 -0.02 2.34 16 34 H 0.38 18.29 7.45 -74.06 -0.55 17.73 16 35 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 36 H 0.06 2.77 7.63 -2.39 -0.02 2.75 16 37 H 0.06 2.53 8.07 -2.39 -0.02 2.51 16 Total: -1.00 -61.79 316.92 -4.39 -66.18 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: -0.31 Total: 30.16 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 3.43 Total: -9.78 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -2.81 Total: -112.73 kcal Atomic # 8 Polarization: -103.43 SS G_CDS: -6.38 Total: -109.81 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: 92.93 SS G_CDS: -0.36 Total: 92.56 kcal Total: -61.79 -4.39 -66.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828045070.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.856 kcal (2) G-P(sol) polarization free energy of solvation -61.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds