Wall clock time and date at job start Tue Mar 31 2020 00:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46865 * 2 1 4 4 N 1.46506 * 109.46916 * 179.97438 * 3 2 1 5 5 S 1.65598 * 119.99714 * 164.99996 * 4 3 2 6 6 O 1.42102 * 106.40528 * 311.46082 * 5 4 3 7 7 O 1.42102 * 106.40241 * 178.53911 * 5 4 3 8 8 N 1.65605 * 107.21797 * 64.99942 * 5 4 3 9 9 C 1.47429 * 125.64830 * 89.97426 * 8 5 4 10 10 C 1.54908 * 104.83166 * 155.90871 * 9 8 5 11 11 C 1.55154 * 101.57978 * 37.01078 * 10 9 8 12 12 O 1.42905 * 110.72078 * 83.03791 * 11 10 9 13 13 C 1.50706 * 110.71963 * 206.13039 * 11 10 9 14 14 H 1.07997 * 119.99867 * 116.15821 * 13 11 10 15 15 C 1.37878 * 119.99931 * 296.16109 * 13 11 10 16 16 N 1.31517 * 119.99998 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99725 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46969 * 90.00074 * 17 15 13 19 19 H 1.48499 * 109.46918 * 209.99936 * 17 15 13 20 20 H 1.48499 * 109.47306 * 330.00135 * 17 15 13 21 21 C 1.47315 * 125.61870 * 270.20256 * 8 5 4 22 22 H 1.09003 * 109.47489 * 60.00214 * 1 2 3 23 23 H 1.09009 * 109.46997 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47316 * 299.99733 * 1 2 3 25 25 H 1.09000 * 109.47316 * 240.00267 * 2 1 3 26 26 H 1.08997 * 109.47241 * 120.00112 * 2 1 3 27 27 H 1.09000 * 109.46935 * 60.00034 * 3 2 1 28 28 H 1.08997 * 109.47283 * 300.00086 * 3 2 1 29 29 H 0.96996 * 119.99616 * 345.00218 * 4 3 2 30 30 H 1.09002 * 110.36321 * 37.07174 * 9 8 5 31 31 H 1.09001 * 110.36218 * 274.75409 * 9 8 5 32 32 H 1.09002 * 111.00493 * 278.93423 * 10 9 8 33 33 H 1.09004 * 111.03381 * 155.09748 * 10 9 8 34 34 H 0.96702 * 114.00066 * 63.83986 * 12 11 10 35 35 H 0.96998 * 119.99694 * 180.02562 * 16 15 13 36 36 H 1.08999 * 110.06686 * 61.67041 * 21 8 5 37 37 H 1.09002 * 109.84880 * 300.41904 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 16 4.3330 2.8278 -0.3704 6 8 3.7525 3.3348 -1.5643 7 8 5.7138 2.5144 -0.2498 8 7 3.9986 3.9320 0.8177 9 6 4.7649 4.1113 2.0643 10 6 4.4802 5.5708 2.4983 11 6 2.9894 5.7294 2.0986 12 8 2.1346 5.2000 3.1140 13 6 2.6608 7.1751 1.8281 14 1 2.3589 7.4843 0.8384 15 6 2.7457 8.1031 2.8444 16 7 3.1129 7.7266 4.0498 17 14 2.3391 9.8952 2.5089 18 1 0.8929 10.1286 2.7524 19 1 3.1391 10.7616 3.4115 20 1 2.6620 10.2201 1.0963 21 6 2.8832 4.8942 0.8053 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.9898 0.6312 0.2183 30 1 5.8298 3.9717 1.8784 31 1 4.4174 3.4140 2.8267 32 1 5.1088 6.2715 1.9488 33 1 4.6113 5.6919 3.5737 34 1 2.1919 5.6665 3.9591 35 1 3.1723 8.3794 4.7647 36 1 1.9315 4.3633 0.7840 37 1 2.9661 5.5457 -0.0646 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828045073.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:13 Heat of formation + Delta-G solvation = -161.245069 kcal Electronic energy + Delta-G solvation = -21004.167442 eV Core-core repulsion = 17713.741935 eV Total energy + Delta-G solvation = -3290.425507 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.74568 -38.43525 -37.28301 -37.02943 -36.05123 -34.11910 -33.04194 -30.83709 -30.00380 -26.73435 -26.54544 -23.23798 -22.60934 -21.57484 -20.42294 -19.35334 -18.66760 -18.43813 -17.39831 -16.88433 -16.57359 -16.26472 -15.89638 -15.78227 -14.99619 -14.61890 -14.09974 -13.94286 -13.76207 -13.73482 -13.66753 -13.40828 -13.31420 -13.25779 -13.12677 -12.79794 -12.62178 -12.48207 -12.26587 -12.16872 -11.94978 -11.94323 -11.75199 -11.19217 -10.62141 -10.51380 -10.07914 -9.95989 -8.21418 -6.34962 -0.50095 1.43301 1.46528 1.54965 1.85600 2.41189 2.50619 3.03417 3.20507 3.75126 3.92181 4.07798 4.12763 4.20584 4.31719 4.45644 4.48658 4.62517 4.69354 4.72875 4.80519 4.95274 5.03973 5.17243 5.20910 5.26418 5.28935 5.35487 5.47059 5.56030 5.57209 5.81654 6.09340 6.14084 6.68996 7.35806 7.47021 8.84526 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022696 B = 0.005493 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.395538 B = 5096.525552 C = 5587.246543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C 0.108 3.892 4 N -1.114 6.114 5 S 2.821 3.179 6 O -1.006 7.006 7 O -1.002 7.002 8 N -1.017 6.017 9 C 0.123 3.877 10 C -0.126 4.126 11 C 0.236 3.764 12 O -0.589 6.589 13 C -0.562 4.562 14 H 0.056 0.944 15 C 0.036 3.964 16 N -0.908 5.908 17 Si 0.957 3.043 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.274 1.274 21 C 0.142 3.858 22 H 0.056 0.944 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.426 0.574 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.379 0.621 35 H 0.270 0.730 36 H 0.065 0.935 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.731 -13.192 -3.449 13.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.018 4.018 4 N -0.878 5.878 5 S 2.830 3.170 6 O -0.989 6.989 7 O -0.987 6.987 8 N -0.858 5.858 9 C -0.002 4.002 10 C -0.166 4.166 11 C 0.195 3.805 12 O -0.398 6.398 13 C -0.600 4.600 14 H 0.074 0.926 15 C -0.165 4.165 16 N -0.548 5.548 17 Si 0.783 3.217 18 H -0.202 1.202 19 H -0.206 1.206 20 H -0.199 1.199 21 C 0.017 3.983 22 H 0.075 0.925 23 H 0.092 0.908 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.262 0.738 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.229 0.771 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.368 -13.307 -4.642 14.160 hybrid contribution -0.015 1.253 0.862 1.521 sum -1.383 -12.054 -3.781 12.709 Atomic orbital electron populations 1.21743 0.94211 1.02887 1.02291 1.21682 0.97040 0.93778 1.03645 1.21534 0.77761 1.00585 1.01931 1.55676 1.16227 1.27907 1.88037 1.00524 0.72014 0.72281 0.72191 1.93552 1.79751 1.80291 1.45341 1.93551 1.33170 1.84666 1.87288 1.58810 1.40718 1.50130 1.36102 1.22089 0.95167 0.98269 0.84703 1.23096 0.98941 0.93440 1.01143 1.19601 0.86661 0.89936 0.84266 1.86067 1.67127 1.61036 1.25522 1.21844 1.47657 0.93732 0.96812 0.92620 1.25585 0.93496 1.02578 0.94863 1.69707 1.47298 1.36182 1.01598 0.85579 0.78203 0.79918 0.78017 1.20177 1.20629 1.19936 1.21689 0.87875 0.90264 0.98513 0.92470 0.90846 0.92586 0.90441 0.90233 0.91868 0.91237 0.73793 0.90198 0.90962 0.92959 0.90804 0.77064 0.92007 0.91628 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 71.98 0.71 -1.57 16 2 C -0.12 -1.97 6.08 30.59 0.19 -1.79 16 3 C 0.11 2.44 6.25 86.38 0.54 2.98 16 4 N -1.11 -26.82 6.05 -187.48 -1.14 -27.96 16 5 S 2.82 93.19 6.39 -56.49 -0.36 92.83 16 6 O -1.01 -38.89 17.19 -128.00 -2.20 -41.09 16 7 O -1.00 -36.54 17.46 -128.00 -2.24 -38.78 16 8 N -1.02 -37.28 3.76 -505.73 -1.90 -39.18 16 9 C 0.12 4.46 7.10 86.85 0.62 5.08 16 10 C -0.13 -5.52 5.57 31.98 0.18 -5.34 16 11 C 0.24 11.15 0.85 -10.35 -0.01 11.14 16 12 O -0.59 -28.31 13.08 -148.98 -1.95 -30.26 16 13 C -0.56 -29.18 8.21 25.60 0.21 -28.97 16 14 H 0.06 2.91 7.55 -2.91 -0.02 2.89 16 15 C 0.04 1.82 5.28 84.65 0.45 2.27 16 16 N -0.91 -46.15 10.67 21.45 0.23 -45.92 16 17 Si 0.96 41.09 29.54 68.60 2.03 43.11 16 18 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 21 C 0.14 5.94 6.37 86.67 0.55 6.49 16 22 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 24 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 1.69 7.75 -2.39 -0.02 1.67 16 29 H 0.43 7.91 8.65 -96.75 -0.84 7.07 16 30 H 0.08 2.68 7.78 -2.39 -0.02 2.66 16 31 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.05 2.38 8.04 -2.39 -0.02 2.36 16 33 H 0.07 3.34 7.65 -2.39 -0.02 3.32 16 34 H 0.38 18.73 7.23 -74.06 -0.54 18.19 16 35 H 0.27 13.12 8.31 -92.71 -0.77 12.35 16 36 H 0.07 2.58 8.07 -2.39 -0.02 2.56 16 37 H 0.06 2.79 7.64 -2.39 -0.02 2.77 16 Total: -1.00 -61.18 316.74 -4.39 -65.57 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: -0.29 Total: 31.38 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 3.43 Total: -9.72 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -2.81 Total: -113.05 kcal Atomic # 8 Polarization: -103.74 SS G_CDS: -6.38 Total: -110.12 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 16 Polarization: 93.19 SS G_CDS: -0.36 Total: 92.83 kcal Total: -61.18 -4.39 -65.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828045073.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.680 kcal (2) G-P(sol) polarization free energy of solvation -61.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds