Wall clock time and date at job start Tue Mar 31 2020 01:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47141 * 2 1 4 4 C 1.50700 * 109.47278 * 239.99610 * 2 1 3 5 5 H 1.08002 * 119.99931 * 240.00125 * 4 2 1 6 6 C 1.37872 * 119.99838 * 59.99941 * 4 2 1 7 7 N 1.31506 * 120.00295 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99764 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46668 * 90.00441 * 8 6 4 10 10 H 1.48494 * 109.47102 * 210.00063 * 8 6 4 11 11 H 1.48496 * 109.47464 * 330.00360 * 8 6 4 12 12 N 1.46502 * 109.46809 * 119.99585 * 2 1 3 13 13 C 1.46498 * 120.00004 * 60.00245 * 12 2 1 14 14 C 1.34776 * 119.99931 * 240.00140 * 12 2 1 15 15 O 1.21552 * 119.99891 * 355.73841 * 14 12 2 16 16 C 1.47850 * 119.99992 * 175.74528 * 14 12 2 17 17 C 1.39678 * 120.49054 * 220.10620 * 16 14 12 18 18 N 1.31743 * 120.89719 * 179.74614 * 17 16 14 19 19 C 1.31749 * 122.04006 * 0.54322 * 18 17 16 20 20 C 1.39684 * 120.87947 * 359.72689 * 19 18 17 21 21 C 1.47733 * 120.49358 * 179.97438 * 20 19 18 22 22 O 1.21476 * 119.99573 * 180.02562 * 21 20 19 23 23 O 1.34706 * 120.00188 * 0.02562 * 21 20 19 24 24 C 1.39722 * 120.49177 * 40.38259 * 16 14 12 25 25 H 1.08993 * 109.47256 * 300.00396 * 1 2 3 26 26 H 1.08999 * 109.46935 * 60.00473 * 1 2 3 27 27 H 1.09001 * 109.47141 * 179.97438 * 1 2 3 28 28 H 0.97004 * 120.00346 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47310 * 94.62172 * 13 12 2 30 30 H 1.09004 * 109.47370 * 214.62097 * 13 12 2 31 31 H 1.08996 * 109.47260 * 334.62242 * 13 12 2 32 32 H 1.07998 * 119.55174 * 359.97438 * 17 16 14 33 33 H 1.08005 * 119.55800 * 179.69740 * 19 18 17 34 34 H 0.96699 * 116.99710 * 179.97438 * 23 21 20 35 35 H 1.08000 * 120.92142 * 359.95663 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9436 0.8300 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.3448 -2.1618 -4.4122 10 1 2.4874 -0.1406 -5.1119 11 1 3.6309 -1.7569 -3.7118 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.1507 1.1032 1.8535 16 6 3.2081 -0.7020 3.3362 17 6 3.2345 0.0054 4.5403 18 7 3.5982 -0.5818 5.6621 19 6 3.9611 -1.8477 5.7026 20 6 3.9694 -2.6285 4.5444 21 6 4.3784 -4.0470 4.5995 22 8 4.3826 -4.7177 3.5867 23 8 4.7465 -4.5968 5.7729 24 6 3.5852 -2.0474 3.3322 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7096 1.1616 -3.4845 29 1 2.4564 -2.7360 1.0441 30 1 1.5432 -2.2653 2.4977 31 1 0.7302 -2.3217 0.9153 32 1 2.9494 1.0470 4.5524 33 1 4.2566 -2.2874 6.6438 34 1 5.0056 -5.5283 5.7591 35 1 3.5797 -2.6226 2.4181 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833515451.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:25 Heat of formation + Delta-G solvation = -78.391480 kcal Electronic energy + Delta-G solvation = -21370.923850 eV Core-core repulsion = 17948.647193 eV Total energy + Delta-G solvation = -3422.276657 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.07653 -39.91469 -38.62949 -36.40936 -35.53985 -33.50975 -32.50480 -31.81954 -29.29329 -26.55397 -25.50057 -25.28932 -24.37461 -22.40479 -21.06391 -19.24207 -18.35678 -17.43987 -17.09155 -16.67601 -16.31952 -15.99973 -15.85887 -15.42856 -14.69429 -14.31937 -13.82232 -13.75415 -13.52175 -13.22406 -12.66491 -12.58378 -12.35272 -11.89842 -11.69499 -11.56855 -11.17365 -11.11782 -10.84789 -10.79140 -10.34801 -10.22920 -10.10688 -9.99455 -9.46988 -9.25783 -9.12086 -8.48524 -7.76429 -6.12277 -4.20601 0.21761 0.76189 2.22264 2.60717 3.13147 3.24745 3.32082 3.35143 3.58505 3.74126 4.13718 4.35654 4.49768 4.53761 4.64499 4.84732 5.12183 5.19712 5.32774 5.55353 5.68182 5.79505 5.90883 6.12761 6.17561 6.23310 6.68068 6.72933 6.95480 7.27230 7.38396 7.50818 7.60351 7.64542 7.92687 8.09943 8.35182 8.68925 8.86968 9.46073 10.93112 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022306 B = 0.004814 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.954333 B = 5814.624759 C = 6639.839001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.257 3.743 3 H 0.067 0.933 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.580 5.580 13 C 0.079 3.921 14 C 0.549 3.451 15 O -0.537 6.537 16 C -0.175 4.175 17 C 0.182 3.818 18 N -0.493 5.493 19 C 0.169 3.831 20 C -0.193 4.193 21 C 0.535 3.465 22 O -0.505 6.505 23 O -0.511 6.511 24 C 0.013 3.987 25 H 0.013 0.987 26 H 0.096 0.904 27 H 0.031 0.969 28 H 0.264 0.736 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.174 0.826 33 H 0.173 0.827 34 H 0.417 0.583 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.375 -9.053 15.741 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.158 3.842 3 H 0.084 0.916 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.310 5.310 13 C -0.065 4.065 14 C 0.334 3.666 15 O -0.415 6.415 16 C -0.180 4.180 17 C 0.026 3.974 18 N -0.201 5.201 19 C 0.011 3.989 20 C -0.196 4.196 21 C 0.378 3.622 22 O -0.394 6.394 23 O -0.324 6.324 24 C -0.012 4.012 25 H 0.032 0.968 26 H 0.114 0.886 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.191 0.809 33 H 0.190 0.810 34 H 0.276 0.724 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.330 -7.605 15.918 17.953 hybrid contribution 0.470 -1.782 -1.700 2.507 sum 3.801 -9.387 14.218 17.456 Atomic orbital electron populations 1.22117 0.97904 0.99559 1.01072 1.19062 0.91018 0.94590 0.79555 0.91554 1.21286 1.32085 1.13104 0.90151 0.92182 1.24877 0.94864 0.94926 0.98985 1.69865 1.36271 1.22479 1.23892 0.86473 0.79250 0.79289 0.82278 1.20565 1.21051 1.19898 1.48241 1.47948 1.11645 1.23186 1.21885 1.02056 0.83047 0.99520 1.17880 0.79940 0.86118 0.82694 1.90779 1.55635 1.18046 1.77088 1.21303 1.04860 0.94518 0.97369 1.23288 0.88072 1.00178 0.85877 1.67892 1.12494 1.10931 1.28748 1.23353 0.89197 0.88891 0.97500 1.19971 1.10848 0.92347 0.96423 1.20527 0.73467 0.87471 0.80716 1.90941 1.49966 1.62939 1.35535 1.84519 1.78975 1.33530 1.35353 1.22325 0.87422 0.93355 0.98129 0.96823 0.88551 0.94971 0.92591 0.92698 0.92976 0.90009 0.80893 0.80964 0.72385 0.81998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.96 37.16 0.33 -3.09 16 2 C 0.26 6.39 2.63 -69.08 -0.18 6.21 16 3 H 0.07 1.90 6.91 -51.93 -0.36 1.54 16 4 C -0.53 -14.01 8.37 -34.44 -0.29 -14.30 16 5 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.64 11.32 55.43 0.63 -24.01 16 8 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.58 -12.04 2.75 -176.37 -0.49 -12.53 16 13 C 0.08 1.31 8.13 59.85 0.49 1.79 16 14 C 0.55 11.06 7.36 -12.33 -0.09 10.97 16 15 O -0.54 -12.77 16.28 5.32 0.09 -12.68 16 16 C -0.18 -2.73 5.19 -104.87 -0.54 -3.27 16 17 C 0.18 2.52 10.80 -17.05 -0.18 2.33 16 18 N -0.49 -6.19 10.33 -12.56 -0.13 -6.32 16 19 C 0.17 1.80 10.78 -17.05 -0.18 1.62 16 20 C -0.19 -2.25 5.88 -104.89 -0.62 -2.87 16 21 C 0.54 5.80 8.28 34.61 0.29 6.08 16 22 O -0.51 -7.03 17.20 -19.25 -0.33 -7.36 16 23 O -0.51 -3.57 12.70 -40.51 -0.51 -4.08 16 24 C 0.01 0.19 7.26 -38.44 -0.28 -0.09 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.10 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.03 0.68 6.66 -51.93 -0.35 0.34 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.05 0.88 6.89 -51.93 -0.36 0.52 16 30 H 0.05 0.73 5.93 -51.93 -0.31 0.42 16 31 H 0.08 1.37 6.44 -51.93 -0.33 1.03 16 32 H 0.17 2.22 8.06 -52.49 -0.42 1.80 16 33 H 0.17 1.32 7.61 -52.48 -0.40 0.92 16 34 H 0.42 1.07 9.11 45.56 0.42 1.48 16 35 H 0.16 2.31 5.20 -52.49 -0.27 2.04 16 LS Contribution 303.35 15.07 4.57 4.57 Total: -1.00 -32.50 303.35 -5.21 -37.72 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -2.66 Total: 1.77 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -1.36 Total: 7.07 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.01 Total: -42.86 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.76 Total: -24.13 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.50 -5.21 -37.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833515451.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.675 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds