Wall clock time and date at job start Tue Mar 31 2020 01:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47141 * 2 1 4 4 C 1.50700 * 109.47278 * 239.99610 * 2 1 3 5 5 H 1.08002 * 119.99931 * 240.00125 * 4 2 1 6 6 C 1.37872 * 119.99838 * 59.99941 * 4 2 1 7 7 N 1.31506 * 120.00295 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99764 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46668 * 90.00441 * 8 6 4 10 10 H 1.48494 * 109.47102 * 210.00063 * 8 6 4 11 11 H 1.48496 * 109.47464 * 330.00360 * 8 6 4 12 12 N 1.46502 * 109.46809 * 119.99585 * 2 1 3 13 13 C 1.46498 * 120.00004 * 60.00245 * 12 2 1 14 14 C 1.34776 * 119.99931 * 240.00140 * 12 2 1 15 15 O 1.21552 * 119.99891 * 355.73841 * 14 12 2 16 16 C 1.47850 * 119.99992 * 175.74528 * 14 12 2 17 17 C 1.39678 * 120.49054 * 220.10620 * 16 14 12 18 18 N 1.31743 * 120.89719 * 179.74614 * 17 16 14 19 19 C 1.31749 * 122.04006 * 0.54322 * 18 17 16 20 20 C 1.39684 * 120.87947 * 359.72689 * 19 18 17 21 21 C 1.47733 * 120.49358 * 179.97438 * 20 19 18 22 22 O 1.21476 * 119.99573 * 180.02562 * 21 20 19 23 23 O 1.34706 * 120.00188 * 0.02562 * 21 20 19 24 24 C 1.39722 * 120.49177 * 40.38259 * 16 14 12 25 25 H 1.08993 * 109.47256 * 300.00396 * 1 2 3 26 26 H 1.08999 * 109.46935 * 60.00473 * 1 2 3 27 27 H 1.09001 * 109.47141 * 179.97438 * 1 2 3 28 28 H 0.97004 * 120.00346 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47310 * 94.62172 * 13 12 2 30 30 H 1.09004 * 109.47370 * 214.62097 * 13 12 2 31 31 H 1.08996 * 109.47260 * 334.62242 * 13 12 2 32 32 H 1.07998 * 119.55174 * 359.97438 * 17 16 14 33 33 H 1.08005 * 119.55800 * 179.69740 * 19 18 17 34 34 H 0.96699 * 116.99710 * 179.97438 * 23 21 20 35 35 H 1.08000 * 120.92142 * 359.95663 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9436 0.8300 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.3448 -2.1618 -4.4122 10 1 2.4874 -0.1406 -5.1119 11 1 3.6309 -1.7569 -3.7118 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.1507 1.1032 1.8535 16 6 3.2081 -0.7020 3.3362 17 6 3.2345 0.0054 4.5403 18 7 3.5982 -0.5818 5.6621 19 6 3.9611 -1.8477 5.7026 20 6 3.9694 -2.6285 4.5444 21 6 4.3784 -4.0470 4.5995 22 8 4.3826 -4.7177 3.5867 23 8 4.7465 -4.5968 5.7729 24 6 3.5852 -2.0474 3.3322 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7096 1.1616 -3.4845 29 1 2.4564 -2.7360 1.0441 30 1 1.5432 -2.2653 2.4977 31 1 0.7302 -2.3217 0.9153 32 1 2.9494 1.0470 4.5524 33 1 4.2566 -2.2874 6.6438 34 1 5.0056 -5.5283 5.7591 35 1 3.5797 -2.6226 2.4181 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833515451.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:25 Heat of formation + Delta-G solvation = -101.741776 kcal Electronic energy + Delta-G solvation = -21371.936395 eV Core-core repulsion = 17948.647193 eV Total energy + Delta-G solvation = -3423.289202 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.12964 -40.98006 -39.96921 -37.30546 -37.13570 -35.14776 -33.85376 -33.01681 -31.06725 -28.00556 -27.32147 -26.48330 -25.59798 -23.63298 -22.39554 -20.66213 -19.32960 -18.66153 -18.42108 -18.07552 -17.65864 -17.28940 -16.96819 -16.78231 -16.37151 -15.89421 -14.93083 -14.89754 -14.74964 -14.49828 -14.36262 -13.91788 -13.62870 -13.49938 -13.11210 -12.96175 -12.73437 -12.63979 -12.61449 -12.22869 -12.16606 -12.09852 -11.28088 -11.23279 -11.10445 -10.65532 -10.55207 -10.43462 -9.47806 -8.16753 -6.33024 -0.76211 -0.32435 1.29937 1.40804 1.42485 1.52055 1.69942 1.88361 2.13181 2.42473 2.58564 3.11645 3.17764 3.34796 3.53442 3.54712 3.90726 3.97678 4.24849 4.43073 4.52690 4.66967 4.73385 4.80145 4.86889 4.92842 5.01255 5.22531 5.41743 5.51471 5.53126 5.62564 5.97382 6.12140 6.53130 6.64585 6.72930 6.92078 7.14221 7.39227 8.87707 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022306 B = 0.004814 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.954333 B = 5814.624759 C = 6639.839001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.261 3.739 3 H 0.017 0.983 4 C -0.541 4.541 5 H 0.059 0.941 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.963 3.037 9 H -0.267 1.267 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.588 5.588 13 C 0.079 3.921 14 C 0.545 3.455 15 O -0.586 6.586 16 C -0.191 4.191 17 C 0.188 3.812 18 N -0.496 5.496 19 C 0.190 3.810 20 C -0.190 4.190 21 C 0.547 3.453 22 O -0.540 6.540 23 O -0.493 6.493 24 C 0.015 3.985 25 H 0.024 0.976 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.266 0.734 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.176 0.824 33 H 0.213 0.787 34 H 0.439 0.561 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.989 -11.482 17.696 21.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.159 3.841 3 H 0.035 0.965 4 C -0.579 4.579 5 H 0.077 0.923 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.788 3.212 9 H -0.192 1.192 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.317 5.317 13 C -0.063 4.063 14 C 0.333 3.667 15 O -0.468 6.468 16 C -0.196 4.196 17 C 0.032 3.968 18 N -0.204 5.204 19 C 0.032 3.968 20 C -0.193 4.193 21 C 0.391 3.609 22 O -0.431 6.431 23 O -0.308 6.308 24 C -0.011 4.011 25 H 0.043 0.957 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.193 0.807 33 H 0.229 0.771 34 H 0.303 0.697 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.945 -10.090 17.922 20.942 hybrid contribution 0.344 -1.076 -2.150 2.429 sum 4.289 -11.166 15.772 19.795 Atomic orbital electron populations 1.21901 0.96659 1.00328 1.00356 1.18667 0.91911 0.92425 0.81057 0.96516 1.21536 1.32158 1.13122 0.91130 0.92316 1.25672 0.95011 0.95578 1.01843 1.69999 1.37138 1.23647 1.24526 0.85481 0.78773 0.78311 0.78602 1.19242 1.21000 1.19858 1.48188 1.48095 1.13167 1.22262 1.22061 1.02089 0.80593 1.01562 1.18510 0.78835 0.85611 0.83748 1.90738 1.57364 1.20346 1.78360 1.20786 1.07889 0.95375 0.95565 1.23312 0.87554 1.00310 0.85648 1.68017 1.12867 1.11891 1.27614 1.23968 0.86474 0.87853 0.98474 1.20034 1.10260 0.93264 0.95736 1.20233 0.72777 0.86784 0.81069 1.90947 1.51596 1.63590 1.36999 1.84457 1.77989 1.35430 1.32898 1.22231 0.87376 0.92458 0.99035 0.95669 0.91055 0.93311 0.92521 0.92097 0.89982 0.90092 0.80736 0.77096 0.69725 0.82666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.33 8.96 71.98 0.64 -5.69 16 2 C 0.26 13.45 2.63 44.25 0.12 13.57 16 3 H 0.02 1.03 6.91 -2.39 -0.02 1.01 16 4 C -0.54 -29.35 8.37 25.60 0.21 -29.14 16 5 H 0.06 3.12 7.65 -2.91 -0.02 3.10 16 6 C 0.02 1.03 5.30 84.65 0.45 1.48 16 7 N -0.91 -52.13 11.32 21.44 0.24 -51.89 16 8 Si 0.96 43.11 29.54 68.60 2.03 45.13 16 9 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 12 N -0.59 -24.95 2.75 -830.20 -2.29 -27.24 16 13 C 0.08 2.58 8.13 127.77 1.04 3.62 16 14 C 0.55 22.68 7.36 86.79 0.64 23.32 16 15 O -0.59 -29.44 16.28 -3.88 -0.06 -29.50 16 16 C -0.19 -5.86 5.19 -20.03 -0.10 -5.96 16 17 C 0.19 5.00 10.80 85.05 0.92 5.92 16 18 N -0.50 -11.10 10.33 -193.65 -2.00 -13.10 16 19 C 0.19 3.31 10.78 85.05 0.92 4.22 16 20 C -0.19 -3.86 5.88 -20.04 -0.12 -3.98 16 21 C 0.55 10.01 8.28 70.33 0.58 10.60 16 22 O -0.54 -13.77 17.20 19.92 0.34 -13.43 16 23 O -0.49 -4.62 12.70 -56.15 -0.71 -5.33 16 24 C 0.01 0.39 7.26 23.01 0.17 0.55 16 25 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.07 3.75 6.07 -2.39 -0.01 3.73 16 27 H 0.05 2.08 6.66 -2.39 -0.02 2.07 16 28 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.06 1.91 6.89 -2.38 -0.02 1.90 16 30 H 0.08 2.17 5.93 -2.38 -0.01 2.15 16 31 H 0.08 2.63 6.44 -2.39 -0.02 2.62 16 32 H 0.18 4.48 8.06 -2.91 -0.02 4.46 16 33 H 0.21 2.02 7.61 -2.91 -0.02 2.00 16 34 H 0.44 0.27 9.11 -74.06 -0.67 -0.41 16 35 H 0.16 4.29 5.20 -2.91 -0.02 4.27 16 Total: -1.00 -72.82 303.35 3.49 -69.32 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 0.48 Total: 7.52 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 5.46 Total: 18.51 kcal Atomic # 7 Polarization: -88.18 SS G_CDS: -4.04 Total: -92.22 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: -0.43 Total: -48.27 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -72.82 3.49 -69.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833515451.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.420 kcal (2) G-P(sol) polarization free energy of solvation -72.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds