Wall clock time and date at job start Tue Mar 31 2020 01:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47162 * 2 1 4 4 C 1.50702 * 109.47140 * 119.99766 * 2 1 3 5 5 H 1.07996 * 119.99978 * 120.00138 * 4 2 1 6 6 C 1.37872 * 120.00104 * 300.00113 * 4 2 1 7 7 N 1.31517 * 119.99911 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00257 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47234 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47298 * 120.00015 * 8 6 4 11 11 H 1.48504 * 109.47310 * 239.99882 * 8 6 4 12 12 N 1.46500 * 109.47412 * 239.99851 * 2 1 3 13 13 C 1.46500 * 119.99915 * 300.00055 * 12 2 1 14 14 C 1.34777 * 120.00114 * 119.99981 * 12 2 1 15 15 O 1.21541 * 119.99847 * 7.06414 * 14 12 2 16 16 C 1.47849 * 119.99662 * 187.06112 * 14 12 2 17 17 C 1.39676 * 120.49450 * 20.06514 * 16 14 12 18 18 N 1.31735 * 120.89720 * 179.74288 * 17 16 14 19 19 C 1.31754 * 122.04418 * 0.54752 * 18 17 16 20 20 C 1.39681 * 120.87499 * 359.71712 * 19 18 17 21 21 C 1.47731 * 120.49757 * 179.97438 * 20 19 18 22 22 O 1.21462 * 120.00404 * 180.02562 * 21 20 19 23 23 O 1.34711 * 119.99908 * 0.02805 * 21 20 19 24 24 C 1.39720 * 120.48981 * 200.33901 * 16 14 12 25 25 H 1.09004 * 109.47527 * 299.99994 * 1 2 3 26 26 H 1.09001 * 109.47237 * 60.00293 * 1 2 3 27 27 H 1.09001 * 109.47162 * 180.02562 * 1 2 3 28 28 H 0.97005 * 120.00125 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47123 * 86.12841 * 13 12 2 30 30 H 1.09006 * 109.47248 * 326.13294 * 13 12 2 31 31 H 1.08999 * 109.47186 * 206.13017 * 13 12 2 32 32 H 1.08010 * 119.55232 * 359.97438 * 17 16 14 33 33 H 1.08001 * 119.56196 * 179.70229 * 19 18 17 34 34 H 0.96702 * 117.00662 * 179.97438 * 23 21 20 35 35 H 1.08005 * 120.91694 * 359.96304 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0080 9 1 3.1464 -2.2869 3.6039 10 1 3.1465 -0.1872 4.8165 11 1 1.1659 -1.5865 4.8162 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.1929 1.0840 -1.8307 16 6 3.1570 -0.6793 -3.3636 17 6 2.4042 -1.7462 -3.8597 18 7 2.7183 -2.3222 -5.0021 19 6 3.7519 -1.9329 -5.7204 20 6 4.5624 -0.8771 -5.2967 21 6 5.7197 -0.4478 -6.1084 22 8 6.4187 0.4711 -5.7312 23 8 5.9996 -1.0755 -7.2670 24 6 4.2623 -0.2330 -4.0925 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7094 1.1619 3.4844 29 1 0.7031 -2.1457 -1.9390 30 1 1.5967 -2.6136 -0.4725 31 1 2.4300 -2.5640 -2.0446 32 1 1.5509 -2.1013 -3.3009 33 1 3.9757 -2.4370 -6.6489 34 1 6.7666 -0.7590 -7.7637 35 1 4.8680 0.5869 -3.7357 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833515454.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:27 Heat of formation + Delta-G solvation = -88.671129 kcal Electronic energy + Delta-G solvation = -21199.754059 eV Core-core repulsion = 17777.031644 eV Total energy + Delta-G solvation = -3422.722416 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.17712 -41.06860 -39.93173 -37.36788 -37.17235 -35.10524 -33.85689 -33.19392 -30.99402 -28.25173 -27.31262 -26.24238 -25.80389 -23.26974 -22.63473 -20.71348 -19.25893 -18.87534 -18.51580 -18.18980 -17.69528 -17.16844 -16.89469 -16.68284 -16.20822 -15.94475 -15.02841 -14.82591 -14.55495 -14.42849 -14.35561 -14.19039 -13.83683 -13.52666 -13.00484 -12.79761 -12.69433 -12.67346 -12.41638 -12.22219 -12.12231 -12.10645 -11.25727 -11.23947 -11.14753 -10.65786 -10.52574 -10.41798 -9.44734 -8.15702 -6.31841 -0.79723 -0.36487 1.26938 1.41118 1.43617 1.54023 1.73424 1.86056 2.18724 2.44192 2.61597 3.13324 3.15264 3.36019 3.51326 3.57446 3.88585 3.94988 4.21499 4.42901 4.57456 4.71712 4.74563 4.83837 4.91447 4.97837 5.04538 5.21079 5.46901 5.47484 5.53602 5.65044 6.00728 6.14483 6.52479 6.64831 6.75054 6.88107 7.16781 7.40545 8.89025 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029502 B = 0.004062 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.858741 B = 6892.173551 C = 7156.120632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.261 3.739 3 H 0.010 0.990 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.964 3.036 9 H -0.265 1.265 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.587 5.587 13 C 0.059 3.941 14 C 0.542 3.458 15 O -0.595 6.595 16 C -0.199 4.199 17 C 0.159 3.841 18 N -0.492 5.492 19 C 0.195 3.805 20 C -0.195 4.195 21 C 0.547 3.453 22 O -0.546 6.546 23 O -0.491 6.491 24 C 0.031 3.969 25 H 0.068 0.932 26 H 0.024 0.976 27 H 0.054 0.946 28 H 0.265 0.735 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.210 0.790 33 H 0.214 0.786 34 H 0.439 0.561 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.725 -10.665 -18.459 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.159 3.841 3 H 0.028 0.972 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.789 3.211 9 H -0.189 1.189 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.316 5.316 13 C -0.082 4.082 14 C 0.330 3.670 15 O -0.477 6.477 16 C -0.205 4.205 17 C 0.004 3.996 18 N -0.200 5.200 19 C 0.037 3.963 20 C -0.198 4.198 21 C 0.391 3.609 22 O -0.438 6.438 23 O -0.305 6.305 24 C 0.005 3.995 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.226 0.774 33 H 0.231 0.769 34 H 0.303 0.697 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.154 -10.590 -18.151 21.250 hybrid contribution 1.429 1.331 1.315 2.355 sum 4.583 -9.259 -16.836 19.753 Atomic orbital electron populations 1.21883 0.96309 1.00695 1.00259 1.18649 0.92041 0.92198 0.81191 0.97184 1.21585 1.31945 1.13156 0.91039 0.91939 1.25699 0.95033 0.95606 1.01954 1.70023 1.37267 1.23790 1.24417 0.85419 0.78226 0.78455 0.78971 1.18927 1.21444 1.19824 1.48122 1.48071 1.13214 1.22183 1.22560 1.01154 0.80563 1.03963 1.18528 0.78898 0.85397 0.84147 1.90728 1.55923 1.22077 1.79007 1.20842 1.00434 1.01750 0.97424 1.24810 0.97327 0.87064 0.90446 1.68105 1.17019 1.29067 1.05848 1.24012 0.85695 0.88528 0.98067 1.20021 0.99644 1.03199 0.96938 1.20298 0.82509 0.78494 0.79602 1.90938 1.50802 1.30314 1.71738 1.84454 1.53270 1.60118 1.32662 1.21759 0.92380 0.94729 0.90630 0.91323 0.95691 0.92746 0.92611 0.89081 0.90188 0.89086 0.77364 0.76923 0.69736 0.84653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.11 8.97 71.98 0.65 -5.46 16 2 C 0.26 13.24 2.63 44.24 0.12 13.36 16 3 H 0.01 0.62 6.92 -2.39 -0.02 0.61 16 4 C -0.54 -28.69 8.02 25.60 0.21 -28.48 16 5 H 0.06 3.23 7.27 -2.91 -0.02 3.21 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.92 -52.07 11.32 21.45 0.24 -51.83 16 8 Si 0.96 42.54 29.54 68.60 2.03 44.57 16 9 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 10 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 N -0.59 -24.01 2.75 -830.22 -2.29 -26.30 16 13 C 0.06 1.67 7.68 127.77 0.98 2.65 16 14 C 0.54 22.79 7.53 86.79 0.65 23.44 16 15 O -0.59 -31.08 15.94 -3.84 -0.06 -31.14 16 16 C -0.20 -6.21 5.58 -20.03 -0.11 -6.33 16 17 C 0.16 3.74 8.80 85.05 0.75 4.49 16 18 N -0.49 -10.06 10.33 -193.65 -2.00 -12.06 16 19 C 0.19 3.37 10.78 85.05 0.92 4.29 16 20 C -0.19 -4.34 5.88 -20.04 -0.12 -4.46 16 21 C 0.55 11.24 8.28 70.33 0.58 11.83 16 22 O -0.55 -15.73 17.20 19.96 0.34 -15.38 16 23 O -0.49 -5.18 12.70 -56.21 -0.71 -5.89 16 24 C 0.03 0.94 9.25 23.01 0.21 1.15 16 25 H 0.07 3.55 6.07 -2.39 -0.01 3.54 16 26 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.05 2.20 7.67 -2.39 -0.02 2.18 16 28 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 29 H 0.09 1.97 7.03 -2.39 -0.02 1.96 16 30 H 0.08 2.45 6.98 -2.38 -0.02 2.43 16 31 H 0.09 2.10 5.23 -2.39 -0.01 2.09 16 32 H 0.21 4.09 4.02 -2.91 -0.01 4.08 16 33 H 0.21 1.97 7.61 -2.91 -0.02 1.95 16 34 H 0.44 0.74 9.11 -74.06 -0.67 0.07 16 35 H 0.14 4.66 7.53 -2.91 -0.02 4.64 16 Total: -1.00 -75.82 301.70 3.32 -72.50 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 0.48 Total: 7.70 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 5.28 Total: 17.84 kcal Atomic # 7 Polarization: -86.15 SS G_CDS: -4.04 Total: -90.19 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -0.43 Total: -52.41 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -75.82 3.32 -72.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833515454.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.169 kcal (2) G-P(sol) polarization free energy of solvation -75.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds