Wall clock time and date at job start Mon Mar 30 2020 23:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35631 * 120.00043 * 2 1 4 4 C 1.41599 * 120.00060 * 171.15986 * 3 2 1 5 5 C 1.37951 * 126.10730 * 139.75840 * 4 3 2 6 6 C 1.40311 * 106.52997 * 179.97438 * 5 4 3 7 7 C 1.35151 * 107.20717 * 0.02562 * 6 5 4 8 8 O 1.34020 * 109.03637 * 0.02562 * 7 6 5 9 9 C 1.41559 * 120.00202 * 179.97438 * 2 1 3 10 10 O 1.21770 * 119.99993 * 172.98643 * 9 2 1 11 11 N 1.34779 * 119.99492 * 352.99222 * 9 2 1 12 12 C 1.46507 * 119.99602 * 179.97438 * 11 9 2 13 13 C 1.50692 * 109.46966 * 180.02562 * 12 11 9 14 14 O 1.21293 * 120.00181 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99965 * 180.02562 * 13 12 11 16 16 C 1.37101 * 119.99977 * 180.02562 * 15 13 12 17 17 H 1.07994 * 120.00068 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99650 * 179.97438 * 16 15 13 19 19 N 1.31413 * 120.00481 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99765 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47016 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.46971 * 120.00098 * 20 18 16 23 23 H 1.48502 * 109.46850 * 239.99983 * 20 18 16 24 24 H 1.08995 * 109.46949 * 89.99937 * 1 2 3 25 25 H 1.09001 * 109.46850 * 209.99983 * 1 2 3 26 26 H 1.09001 * 109.47353 * 330.00257 * 1 2 3 27 27 H 1.07999 * 119.99447 * 351.15883 * 3 2 1 28 28 H 1.08002 * 126.73239 * 359.97438 * 5 4 3 29 29 H 1.08008 * 126.39594 * 179.97438 * 6 5 4 30 30 H 1.07995 * 125.48438 * 180.02562 * 7 6 5 31 31 H 0.96998 * 120.00387 * 359.97438 * 11 9 2 32 32 H 1.09005 * 109.46942 * 299.99958 * 12 11 9 33 33 H 1.08995 * 109.46954 * 59.99817 * 12 11 9 34 34 H 0.97002 * 119.99844 * 359.97438 * 15 13 12 35 35 H 0.96995 * 120.00139 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.1746 0.0000 4 6 3.5885 1.1819 0.1885 5 6 4.4944 1.9790 -0.4802 6 6 5.7623 1.6517 0.0239 7 6 5.5856 0.6906 0.9575 8 8 4.2787 0.4096 1.0536 9 6 2.2148 -1.2259 0.0005 10 8 3.4257 -1.2299 -0.1282 11 7 1.5484 -2.3887 0.1435 12 6 2.2809 -3.6575 0.1435 13 6 1.3108 -4.7975 0.3168 14 8 0.1242 -4.5724 0.4288 15 7 1.7617 -6.0673 0.3474 16 6 0.8790 -7.1045 0.5046 17 1 -0.1775 -6.9041 0.6043 18 6 1.3438 -8.4136 0.5356 19 7 2.6294 -8.6575 0.4147 20 14 0.1412 -9.8268 0.7504 21 1 -1.2384 -9.2897 0.8649 22 1 0.2251 -10.7310 -0.4245 23 1 0.4813 -10.5831 1.9824 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6547 2.1043 -0.1438 28 1 4.2714 2.7112 -1.2421 29 1 6.7039 2.0861 -0.2784 30 1 6.3710 0.2240 1.5334 31 1 0.5839 -2.3855 0.2463 32 1 2.8099 -3.7716 -0.8028 33 1 2.9986 -3.6626 0.9638 34 1 2.7106 -6.2473 0.2575 35 1 2.9538 -9.5713 0.4360 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847041526.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:43 Heat of formation + Delta-G solvation = -36.222321 kcal Electronic energy + Delta-G solvation = -20788.115532 eV Core-core repulsion = 17367.667467 eV Total energy + Delta-G solvation = -3420.448065 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.31097 -39.85307 -38.19388 -34.94963 -34.49505 -33.72933 -32.81833 -31.39562 -30.43187 -27.70159 -26.42638 -24.78077 -23.04903 -21.52139 -20.77722 -19.68905 -19.05113 -18.13024 -17.73980 -16.19408 -15.93657 -15.70728 -15.33727 -15.27127 -14.63889 -14.23358 -14.06257 -13.80305 -13.54182 -13.07939 -12.99566 -12.76123 -12.54973 -12.46102 -12.25239 -11.91395 -11.83825 -11.63784 -11.14772 -10.41380 -10.33063 -9.92371 -9.82858 -9.65244 -9.55090 -8.73540 -8.63512 -8.10638 -7.83483 -6.51986 -3.94000 0.58432 2.19163 2.74298 3.09813 3.21857 3.27039 3.28495 3.51860 3.53526 3.74470 4.11698 4.65088 4.86606 4.92370 4.98096 5.08861 5.14353 5.16714 5.37508 5.50066 5.60714 5.82832 5.89195 5.92486 5.98027 6.05997 6.08220 6.13717 6.32183 6.59750 6.71685 7.29341 7.45733 7.84475 7.91939 8.43821 8.49628 9.04158 9.38951 9.86745 10.65001 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032213 B = 0.003421 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.993766 B = 8183.559759 C = 8928.620566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.156 4.156 3 C -0.020 4.020 4 C 0.020 3.980 5 C -0.190 4.190 6 C -0.227 4.227 7 C -0.020 4.020 8 O -0.133 6.133 9 C 0.541 3.459 10 O -0.532 6.532 11 N -0.702 5.702 12 C 0.110 3.890 13 C 0.428 3.572 14 O -0.598 6.598 15 N -0.549 5.549 16 C -0.305 4.305 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.895 5.895 20 Si 0.933 3.067 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.153 0.847 28 H 0.146 0.854 29 H 0.144 0.856 30 H 0.196 0.804 31 H 0.410 0.590 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.396 0.604 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.362 18.839 -0.543 18.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 C -0.039 4.039 4 C -0.030 4.030 5 C -0.210 4.210 6 C -0.246 4.246 7 C -0.090 4.090 8 O -0.026 6.026 9 C 0.329 3.671 10 O -0.412 6.412 11 N -0.358 5.358 12 C -0.018 4.018 13 C 0.214 3.786 14 O -0.485 6.485 15 N -0.184 5.184 16 C -0.434 4.434 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.535 5.535 20 Si 0.759 3.241 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.171 0.829 28 H 0.164 0.836 29 H 0.162 0.838 30 H 0.213 0.787 31 H 0.250 0.750 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.230 0.770 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.372 18.507 -0.357 18.662 hybrid contribution -0.110 -0.907 -0.129 0.922 sum 2.262 17.600 -0.485 17.752 Atomic orbital electron populations 1.20871 0.90009 1.03673 1.03178 1.21194 0.97230 0.93376 1.04094 1.20389 0.88998 0.97922 0.96634 1.19519 0.92584 0.94056 0.96864 1.22073 0.92311 1.03171 1.03421 1.21581 0.98762 1.02673 1.01594 1.24113 0.83791 0.99365 1.01780 1.84282 1.18026 1.50226 1.50095 1.16894 0.87587 0.84347 0.78250 1.90852 1.13486 1.87285 1.49575 1.45745 1.12284 1.05007 1.72714 1.20929 0.94521 0.83276 1.03085 1.19763 0.89084 0.84175 0.85577 1.90488 1.16846 1.83917 1.57222 1.41806 1.10578 1.04184 1.61826 1.19784 0.92119 0.84315 1.47186 0.87615 1.25331 0.96676 0.98890 0.96851 1.69623 1.12838 1.21866 1.49156 0.85755 0.80219 0.80219 0.77886 1.19120 1.20607 1.20609 0.90371 0.90556 0.90701 0.82942 0.83649 0.83817 0.78678 0.75010 0.89912 0.89856 0.77042 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 9.71 36.01 0.35 -0.82 16 2 C -0.16 -2.01 5.89 -104.29 -0.61 -2.62 16 3 C -0.02 -0.23 9.58 -39.23 -0.38 -0.60 16 4 C 0.02 0.28 5.31 -38.41 -0.20 0.08 16 5 C -0.19 -2.34 10.90 -38.91 -0.42 -2.76 16 6 C -0.23 -2.69 10.87 -39.90 -0.43 -3.12 16 7 C -0.02 -0.26 12.06 29.63 0.36 0.10 16 8 O -0.13 -2.09 7.84 -20.13 -0.16 -2.25 16 9 C 0.54 9.06 7.33 -14.99 -0.11 8.95 16 10 O -0.53 -10.28 12.45 -19.66 -0.24 -10.52 16 11 N -0.70 -12.21 5.46 -64.43 -0.35 -12.57 16 12 C 0.11 2.09 6.15 -5.19 -0.03 2.06 16 13 C 0.43 9.96 7.85 -10.99 -0.09 9.87 16 14 O -0.60 -15.39 15.24 5.55 0.08 -15.31 16 15 N -0.55 -13.75 5.29 -10.97 -0.06 -13.81 16 16 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 17 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 18 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 19 N -0.89 -23.99 13.05 55.50 0.72 -23.27 16 20 Si 0.93 20.57 29.55 -169.99 -5.02 15.54 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 0.81 6.35 -51.93 -0.33 0.48 16 26 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.14 1.32 8.06 -52.48 -0.42 0.89 16 30 H 0.20 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.41 6.92 5.28 -40.82 -0.22 6.71 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.40 9.55 7.90 -40.82 -0.32 9.23 16 35 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 310.76 15.07 4.68 4.68 Total: -1.00 -33.01 310.76 -5.92 -38.92 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -3.76 Total: 15.32 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -1.81 Total: 3.24 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.31 Total: -49.64 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.32 Total: -28.07 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.01 -5.92 -38.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847041526.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.700 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds