Wall clock time and date at job start Mon Mar 30 2020 23:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35631 * 120.00043 * 2 1 4 4 C 1.41599 * 120.00060 * 171.15986 * 3 2 1 5 5 C 1.37951 * 126.10730 * 139.75840 * 4 3 2 6 6 C 1.40311 * 106.52997 * 179.97438 * 5 4 3 7 7 C 1.35151 * 107.20717 * 0.02562 * 6 5 4 8 8 O 1.34020 * 109.03637 * 0.02562 * 7 6 5 9 9 C 1.41559 * 120.00202 * 179.97438 * 2 1 3 10 10 O 1.21770 * 119.99993 * 172.98643 * 9 2 1 11 11 N 1.34779 * 119.99492 * 352.99222 * 9 2 1 12 12 C 1.46507 * 119.99602 * 179.97438 * 11 9 2 13 13 C 1.50692 * 109.46966 * 180.02562 * 12 11 9 14 14 O 1.21293 * 120.00181 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99965 * 180.02562 * 13 12 11 16 16 C 1.37101 * 119.99977 * 180.02562 * 15 13 12 17 17 H 1.07994 * 120.00068 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99650 * 179.97438 * 16 15 13 19 19 N 1.31413 * 120.00481 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99765 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47016 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.46971 * 120.00098 * 20 18 16 23 23 H 1.48502 * 109.46850 * 239.99983 * 20 18 16 24 24 H 1.08995 * 109.46949 * 89.99937 * 1 2 3 25 25 H 1.09001 * 109.46850 * 209.99983 * 1 2 3 26 26 H 1.09001 * 109.47353 * 330.00257 * 1 2 3 27 27 H 1.07999 * 119.99447 * 351.15883 * 3 2 1 28 28 H 1.08002 * 126.73239 * 359.97438 * 5 4 3 29 29 H 1.08008 * 126.39594 * 179.97438 * 6 5 4 30 30 H 1.07995 * 125.48438 * 180.02562 * 7 6 5 31 31 H 0.96998 * 120.00387 * 359.97438 * 11 9 2 32 32 H 1.09005 * 109.46942 * 299.99958 * 12 11 9 33 33 H 1.08995 * 109.46954 * 59.99817 * 12 11 9 34 34 H 0.97002 * 119.99844 * 359.97438 * 15 13 12 35 35 H 0.96995 * 120.00139 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.1746 0.0000 4 6 3.5885 1.1819 0.1885 5 6 4.4944 1.9790 -0.4802 6 6 5.7623 1.6517 0.0239 7 6 5.5856 0.6906 0.9575 8 8 4.2787 0.4096 1.0536 9 6 2.2148 -1.2259 0.0005 10 8 3.4257 -1.2299 -0.1282 11 7 1.5484 -2.3887 0.1435 12 6 2.2809 -3.6575 0.1435 13 6 1.3108 -4.7975 0.3168 14 8 0.1242 -4.5724 0.4288 15 7 1.7617 -6.0673 0.3474 16 6 0.8790 -7.1045 0.5046 17 1 -0.1775 -6.9041 0.6043 18 6 1.3438 -8.4136 0.5356 19 7 2.6294 -8.6575 0.4147 20 14 0.1412 -9.8268 0.7504 21 1 -1.2384 -9.2897 0.8649 22 1 0.2251 -10.7310 -0.4245 23 1 0.4813 -10.5831 1.9824 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6547 2.1043 -0.1438 28 1 4.2714 2.7112 -1.2421 29 1 6.7039 2.0861 -0.2784 30 1 6.3710 0.2240 1.5334 31 1 0.5839 -2.3855 0.2463 32 1 2.8099 -3.7716 -0.8028 33 1 2.9986 -3.6626 0.9638 34 1 2.7106 -6.2473 0.2575 35 1 2.9538 -9.5713 0.4360 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847041526.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:43 Heat of formation + Delta-G solvation = -58.820283 kcal Electronic energy + Delta-G solvation = -20789.095453 eV Core-core repulsion = 17367.667467 eV Total energy + Delta-G solvation = -3421.427986 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.28393 -41.19954 -40.00718 -36.31633 -35.91609 -35.38714 -33.78066 -33.40004 -31.41682 -29.25515 -27.27156 -26.62844 -24.27616 -22.48820 -21.81919 -21.38382 -20.46372 -19.97867 -18.87523 -17.65555 -17.21724 -16.95569 -16.79604 -16.67419 -16.33636 -15.83213 -15.56462 -15.20484 -14.59681 -14.23766 -14.02825 -13.90080 -13.67880 -13.56879 -13.45704 -13.40367 -13.31526 -12.92520 -12.76302 -12.46635 -12.11792 -11.59999 -11.07338 -10.83055 -10.59148 -10.55118 -10.17439 -10.08699 -8.79083 -8.53026 -6.03569 -0.38573 1.21183 1.33844 1.41969 1.56347 1.79949 1.87305 2.10660 2.26837 2.34985 2.50657 3.10624 3.13959 3.78727 3.89660 4.14347 4.18598 4.22467 4.31705 4.38822 4.39613 4.58226 4.80846 4.82372 4.98808 5.07456 5.18604 5.25855 5.28829 5.36973 5.44858 5.73184 5.89709 6.34624 6.44042 6.54133 7.01090 7.18072 7.41444 7.91174 8.64186 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032213 B = 0.003421 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.993766 B = 8183.559759 C = 8928.620566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.183 4.183 3 C 0.003 3.997 4 C -0.016 4.016 5 C -0.188 4.188 6 C -0.232 4.232 7 C -0.039 4.039 8 O -0.165 6.165 9 C 0.537 3.463 10 O -0.563 6.563 11 N -0.706 5.706 12 C 0.124 3.876 13 C 0.432 3.568 14 O -0.623 6.623 15 N -0.559 5.559 16 C -0.338 4.338 17 H 0.087 0.913 18 C -0.011 4.011 19 N -0.917 5.917 20 Si 0.998 3.002 21 H -0.269 1.269 22 H -0.270 1.270 23 H -0.271 1.271 24 H 0.088 0.912 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.199 0.801 28 H 0.173 0.827 29 H 0.170 0.830 30 H 0.219 0.781 31 H 0.413 0.587 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.398 0.602 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.198 20.152 -0.898 20.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.185 4.185 3 C -0.017 4.017 4 C -0.066 4.066 5 C -0.207 4.207 6 C -0.251 4.251 7 C -0.108 4.108 8 O -0.059 6.059 9 C 0.328 3.672 10 O -0.445 6.445 11 N -0.362 5.362 12 C -0.004 4.004 13 C 0.219 3.781 14 O -0.511 6.511 15 N -0.194 5.194 16 C -0.467 4.467 17 H 0.105 0.895 18 C -0.212 4.212 19 N -0.557 5.557 20 Si 0.821 3.179 21 H -0.193 1.193 22 H -0.196 1.196 23 H -0.196 1.196 24 H 0.106 0.894 25 H 0.079 0.921 26 H 0.122 0.878 27 H 0.215 0.785 28 H 0.190 0.810 29 H 0.187 0.813 30 H 0.235 0.765 31 H 0.253 0.747 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.232 0.768 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.216 19.841 -0.716 19.978 hybrid contribution 0.070 -1.200 -0.025 1.202 sum 2.286 18.641 -0.741 18.796 Atomic orbital electron populations 1.20870 0.87745 1.04311 1.04033 1.21205 0.98702 0.91843 1.06785 1.20979 0.88136 0.99149 0.93389 1.20157 0.93945 0.94700 0.97754 1.22526 0.92140 1.02852 1.03205 1.21996 0.99845 1.02232 1.01000 1.24773 0.83551 0.99920 1.02567 1.84253 1.19255 1.51305 1.51122 1.17541 0.87448 0.85128 0.77089 1.90831 1.14852 1.87753 1.51051 1.45781 1.12327 1.04653 1.73414 1.20705 0.93484 0.82617 1.03623 1.20396 0.89348 0.84563 0.83746 1.90462 1.18326 1.84453 1.57876 1.41854 1.10457 1.04547 1.62544 1.19794 0.91771 0.85697 1.49421 0.89510 1.26159 0.98440 1.00735 0.95819 1.69688 1.14103 1.22820 1.49047 0.84791 0.77781 0.76967 0.78314 1.19348 1.19567 1.19597 0.89372 0.92096 0.87824 0.78456 0.80973 0.81291 0.76488 0.74738 0.89196 0.89281 0.76771 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 9.71 71.24 0.69 -1.29 16 2 C -0.18 -4.46 5.89 -19.65 -0.12 -4.58 16 3 C 0.00 0.06 9.58 22.50 0.22 0.27 16 4 C -0.02 -0.42 5.31 23.03 0.12 -0.30 16 5 C -0.19 -4.20 10.90 22.71 0.25 -3.96 16 6 C -0.23 -5.07 10.87 22.06 0.24 -4.83 16 7 C -0.04 -0.96 12.06 67.11 0.81 -0.15 16 8 O -0.16 -5.13 7.84 17.48 0.14 -5.00 16 9 C 0.54 17.96 7.33 85.06 0.62 18.58 16 10 O -0.56 -21.90 12.45 19.13 0.24 -21.66 16 11 N -0.71 -24.80 5.46 -475.93 -2.60 -27.40 16 12 C 0.12 4.79 6.15 85.63 0.53 5.32 16 13 C 0.43 20.54 7.85 87.65 0.69 21.23 16 14 O -0.62 -32.77 15.24 -3.07 -0.05 -32.81 16 15 N -0.56 -28.63 5.29 -306.99 -1.62 -30.26 16 16 C -0.34 -18.81 9.68 84.04 0.81 -18.00 16 17 H 0.09 5.08 7.16 -2.91 -0.02 5.06 16 18 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 19 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 20 Si 1.00 41.94 29.55 68.60 2.03 43.97 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 24 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.06 1.25 6.35 -2.39 -0.02 1.24 16 26 H 0.10 1.18 8.08 -2.39 -0.02 1.16 16 27 H 0.20 2.09 8.06 -2.91 -0.02 2.07 16 28 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 29 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 30 H 0.22 3.89 8.06 -2.91 -0.02 3.87 16 31 H 0.41 14.11 5.28 -92.71 -0.49 13.63 16 32 H 0.09 3.35 8.14 -2.38 -0.02 3.33 16 33 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 34 H 0.40 19.68 7.90 -92.71 -0.73 18.95 16 35 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -71.95 310.76 3.67 -68.29 By element: Atomic # 1 Polarization: 41.57 SS G_CDS: -0.08 Total: 41.50 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 5.33 Total: 12.20 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -3.94 Total: -106.48 kcal Atomic # 8 Polarization: -59.80 SS G_CDS: 0.33 Total: -59.47 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -71.95 3.67 -68.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847041526.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.467 kcal (2) G-P(sol) polarization free energy of solvation -71.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds