Wall clock time and date at job start Tue Mar 31 2020 01:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47101 * 2 1 4 4 C 1.50697 * 109.47069 * 239.99496 * 2 1 3 5 5 H 1.07998 * 119.99916 * 245.63594 * 4 2 1 6 6 C 1.37872 * 120.00038 * 65.63648 * 4 2 1 7 7 N 1.31517 * 120.00421 * 197.76474 * 6 4 2 8 8 Si 1.86802 * 120.00157 * 17.48300 * 6 4 2 9 9 H 1.48499 * 109.47522 * 180.27850 * 8 6 4 10 10 H 1.48500 * 109.47106 * 300.28123 * 8 6 4 11 11 H 1.48503 * 109.46906 * 60.27708 * 8 6 4 12 12 O 1.45203 * 109.47064 * 119.99760 * 2 1 3 13 13 C 1.34229 * 116.99844 * 270.00192 * 12 2 1 14 14 O 1.20821 * 120.00409 * 359.97438 * 13 12 2 15 15 C 1.50707 * 119.99816 * 180.02562 * 13 12 2 16 16 H 1.09002 * 110.26275 * 302.06746 * 15 13 12 17 17 C 1.54347 * 110.30043 * 179.97438 * 15 13 12 18 18 C 1.54339 * 102.39192 * 214.71469 * 17 15 13 19 19 C 1.51380 * 105.16958 * 26.35748 * 18 17 15 20 20 C 1.38465 * 130.36894 * 162.83067 * 19 18 17 21 21 C 1.38324 * 120.19737 * 179.97438 * 20 19 18 22 22 F 1.35103 * 120.05717 * 180.02562 * 21 20 19 23 23 C 1.38474 * 119.88138 * 359.97438 * 21 20 19 24 24 C 1.38070 * 119.90780 * 0.02562 * 23 21 20 25 25 C 1.38229 * 109.75605 * 342.80206 * 19 18 17 26 26 H 1.08997 * 109.47604 * 186.36050 * 1 2 3 27 27 H 1.09008 * 109.47276 * 306.35898 * 1 2 3 28 28 H 1.09004 * 109.47134 * 66.35368 * 1 2 3 29 29 H 0.97005 * 119.99147 * 354.59150 * 7 6 4 30 30 H 1.08990 * 110.82265 * 332.94451 * 17 15 13 31 31 H 1.08999 * 110.82201 * 96.49136 * 17 15 13 32 32 H 1.08999 * 110.30433 * 145.27736 * 18 17 15 33 33 H 1.08996 * 110.30968 * 267.43139 * 18 17 15 34 34 H 1.08009 * 119.89753 * 359.97438 * 20 19 18 35 35 H 1.07990 * 120.04874 * 180.02562 * 23 21 20 36 36 H 1.07994 * 119.87680 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5760 -1.6386 -1.1338 6 6 1.7977 -0.1757 -2.4793 7 7 1.9113 -0.9309 -3.5500 8 14 1.3107 1.6196 -2.6502 9 1 1.1107 1.9438 -4.0855 10 1 0.0481 1.8629 -1.9072 11 1 2.3861 2.4793 -2.0937 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0641 2.2811 14 8 1.9981 1.2519 2.2504 15 6 2.7192 -0.5769 3.5493 16 1 2.0378 -1.3651 3.8693 17 6 2.8727 0.4830 4.6607 18 6 4.1096 -0.0232 5.4326 19 6 4.9093 -0.8177 4.4223 20 6 6.2309 -1.2297 4.4486 21 6 6.7537 -1.9583 3.3955 22 9 8.0435 -2.3593 3.4244 23 6 5.9523 -2.2770 2.3121 24 6 4.6345 -1.8660 2.2861 25 6 4.1103 -1.1359 3.3401 26 1 -0.3634 -1.0213 0.1138 27 1 -0.3634 0.6093 0.8277 28 1 -0.3633 0.4122 -0.9414 29 1 2.2358 -1.8415 -3.4690 30 1 3.0590 1.4682 4.2334 31 1 1.9936 0.4989 5.3050 32 1 4.6959 0.8185 5.8014 33 1 3.8033 -0.6631 6.2601 34 1 6.8555 -0.9813 5.2941 35 1 6.3576 -2.8461 1.4886 36 1 4.0101 -2.1144 1.4407 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850842182.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:50 Heat of formation + Delta-G solvation = -117.460306 kcal Electronic energy + Delta-G solvation = -21442.330166 eV Core-core repulsion = 17998.439396 eV Total energy + Delta-G solvation = -3443.890770 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.92612 -40.69488 -39.15954 -36.26688 -35.13539 -33.29598 -31.73832 -30.39266 -28.85576 -27.99054 -24.97855 -23.11463 -22.87973 -21.27054 -20.63905 -19.48859 -17.82330 -17.19712 -17.05694 -16.54730 -16.38586 -15.66677 -15.56499 -14.85623 -14.43734 -13.98010 -13.68760 -13.56545 -13.03868 -12.93858 -12.82484 -12.51385 -12.43274 -12.00634 -11.85843 -11.74134 -11.56015 -11.47423 -10.95635 -10.82553 -10.59025 -10.13651 -10.07116 -9.78594 -9.76804 -8.99297 -8.96183 -8.49542 -8.37911 -6.67290 -4.27788 1.04879 1.19722 2.74154 3.28926 3.33709 3.37579 3.51940 3.61622 3.97903 4.33733 4.38905 4.40033 4.81679 4.85704 4.99666 5.05140 5.08244 5.18357 5.41611 5.45033 5.60264 5.62318 5.75340 5.89394 6.01458 6.07778 6.12589 6.17548 6.30224 6.41617 6.44978 6.50617 6.67066 6.85226 7.11794 7.32841 7.77599 8.20227 8.42311 8.79372 9.39814 10.75564 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019499 B = 0.005386 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.663170 B = 5197.024140 C = 6178.615694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.195 3.805 3 H 0.037 0.963 4 C -0.607 4.607 5 H 0.068 0.932 6 C 0.040 3.960 7 N -0.892 5.892 8 Si 1.037 2.963 9 H -0.279 1.279 10 H -0.271 1.271 11 H -0.279 1.279 12 O -0.342 6.342 13 C 0.460 3.540 14 O -0.518 6.518 15 C -0.044 4.044 16 H 0.120 0.880 17 C -0.108 4.108 18 C -0.080 4.080 19 C -0.064 4.064 20 C -0.149 4.149 21 C 0.100 3.900 22 F -0.141 7.141 23 C -0.152 4.152 24 C -0.057 4.057 25 C -0.101 4.101 26 H 0.054 0.946 27 H 0.030 0.970 28 H 0.072 0.928 29 H 0.271 0.729 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.660 -0.615 17.522 18.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.141 3.859 3 H 0.055 0.945 4 C -0.644 4.644 5 H 0.087 0.913 6 C -0.166 4.166 7 N -0.525 5.525 8 Si 0.864 3.136 9 H -0.204 1.204 10 H -0.198 1.198 11 H -0.205 1.205 12 O -0.257 6.257 13 C 0.302 3.698 14 O -0.408 6.408 15 C -0.063 4.063 16 H 0.138 0.862 17 C -0.146 4.146 18 C -0.117 4.117 19 C -0.064 4.064 20 C -0.168 4.168 21 C 0.081 3.919 22 F -0.120 7.120 23 C -0.171 4.171 24 C -0.075 4.075 25 C -0.101 4.101 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.171 0.848 16.324 16.870 hybrid contribution 0.723 -1.292 0.947 1.757 sum 4.893 -0.444 17.271 17.957 Atomic orbital electron populations 1.22570 0.98015 1.01041 1.01005 1.20893 0.90967 0.94016 0.80039 0.94533 1.21883 1.42051 1.10883 0.89626 0.91347 1.25645 0.94485 1.05127 0.91385 1.70877 1.40585 1.09994 1.31063 0.84160 0.77626 0.75149 0.76683 1.20407 1.19751 1.20469 1.86536 1.75464 1.42947 1.20762 1.23193 0.74506 0.85991 0.86102 1.90577 1.48897 1.16796 1.84530 1.20594 0.94731 0.99050 0.91948 0.86204 1.22361 0.98005 0.99157 0.95040 1.21097 0.95170 0.98875 0.96524 1.20336 0.92609 0.97326 0.96178 1.20416 0.95414 1.01799 0.99131 1.17541 0.78929 0.99124 0.96280 1.91489 1.34873 1.88897 1.96713 1.21095 0.94199 1.03448 0.98367 1.20862 0.94418 0.94240 0.97949 1.20161 0.94539 0.99891 0.95552 0.92658 0.95094 0.90959 0.91829 0.88721 0.89570 0.89924 0.89501 0.84941 0.84280 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.82 9.22 37.16 0.34 -3.47 16 2 C 0.19 4.84 2.14 -27.89 -0.06 4.78 16 3 H 0.04 0.96 5.81 -51.93 -0.30 0.66 16 4 C -0.61 -16.97 9.16 -34.44 -0.32 -17.28 16 5 H 0.07 2.03 8.06 -52.49 -0.42 1.61 16 6 C 0.04 1.13 5.29 -17.82 -0.09 1.04 16 7 N -0.89 -26.56 13.70 55.43 0.76 -25.80 16 8 Si 1.04 24.86 26.29 -169.99 -4.47 20.39 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.27 -6.02 5.75 56.52 0.33 -5.70 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 O -0.34 -7.59 8.69 -39.25 -0.34 -7.93 16 13 C 0.46 8.91 7.15 36.01 0.26 9.17 16 14 O -0.52 -11.19 14.71 -18.75 -0.28 -11.46 16 15 C -0.04 -0.63 3.37 -91.89 -0.31 -0.94 16 16 H 0.12 1.44 8.14 -51.93 -0.42 1.01 16 17 C -0.11 -1.24 6.35 -25.32 -0.16 -1.40 16 18 C -0.08 -0.76 6.77 -26.85 -0.18 -0.94 16 19 C -0.06 -0.79 6.14 -104.21 -0.64 -1.43 16 20 C -0.15 -1.78 10.02 -39.47 -0.40 -2.18 16 21 C 0.10 1.34 7.30 -39.46 -0.29 1.05 16 22 F -0.14 -1.89 17.27 2.25 0.04 -1.85 16 23 C -0.15 -2.13 10.03 -39.56 -0.40 -2.52 16 24 C -0.06 -0.87 9.62 -39.54 -0.38 -1.25 16 25 C -0.10 -1.46 5.60 -104.19 -0.58 -2.05 16 26 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 28 H 0.07 1.66 4.88 -51.93 -0.25 1.40 16 29 H 0.27 8.01 8.73 -40.82 -0.36 7.65 16 30 H 0.09 1.26 7.02 -51.93 -0.36 0.90 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 35 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.15 2.50 7.12 -52.49 -0.37 2.13 16 LS Contribution 305.37 15.07 4.60 4.60 Total: -1.00 -30.95 305.37 -7.22 -38.17 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -4.33 Total: 1.32 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -3.20 Total: -17.43 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.76 Total: -25.80 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.62 Total: -19.40 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -4.47 Total: 20.39 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.95 -7.22 -38.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842182.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.291 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds