Wall clock time and date at job start Tue Mar 31 2020 01:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47101 * 2 1 4 4 C 1.50697 * 109.47069 * 239.99496 * 2 1 3 5 5 H 1.07998 * 119.99916 * 245.63594 * 4 2 1 6 6 C 1.37872 * 120.00038 * 65.63648 * 4 2 1 7 7 N 1.31517 * 120.00421 * 197.76474 * 6 4 2 8 8 Si 1.86802 * 120.00157 * 17.48300 * 6 4 2 9 9 H 1.48499 * 109.47522 * 180.27850 * 8 6 4 10 10 H 1.48500 * 109.47106 * 300.28123 * 8 6 4 11 11 H 1.48503 * 109.46906 * 60.27708 * 8 6 4 12 12 O 1.45203 * 109.47064 * 119.99760 * 2 1 3 13 13 C 1.34229 * 116.99844 * 270.00192 * 12 2 1 14 14 O 1.20821 * 120.00409 * 359.97438 * 13 12 2 15 15 C 1.50707 * 119.99816 * 180.02562 * 13 12 2 16 16 H 1.09002 * 110.26275 * 302.06746 * 15 13 12 17 17 C 1.54347 * 110.30043 * 179.97438 * 15 13 12 18 18 C 1.54339 * 102.39192 * 214.71469 * 17 15 13 19 19 C 1.51380 * 105.16958 * 26.35748 * 18 17 15 20 20 C 1.38465 * 130.36894 * 162.83067 * 19 18 17 21 21 C 1.38324 * 120.19737 * 179.97438 * 20 19 18 22 22 F 1.35103 * 120.05717 * 180.02562 * 21 20 19 23 23 C 1.38474 * 119.88138 * 359.97438 * 21 20 19 24 24 C 1.38070 * 119.90780 * 0.02562 * 23 21 20 25 25 C 1.38229 * 109.75605 * 342.80206 * 19 18 17 26 26 H 1.08997 * 109.47604 * 186.36050 * 1 2 3 27 27 H 1.09008 * 109.47276 * 306.35898 * 1 2 3 28 28 H 1.09004 * 109.47134 * 66.35368 * 1 2 3 29 29 H 0.97005 * 119.99147 * 354.59150 * 7 6 4 30 30 H 1.08990 * 110.82265 * 332.94451 * 17 15 13 31 31 H 1.08999 * 110.82201 * 96.49136 * 17 15 13 32 32 H 1.08999 * 110.30433 * 145.27736 * 18 17 15 33 33 H 1.08996 * 110.30968 * 267.43139 * 18 17 15 34 34 H 1.08009 * 119.89753 * 359.97438 * 20 19 18 35 35 H 1.07990 * 120.04874 * 180.02562 * 23 21 20 36 36 H 1.07994 * 119.87680 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5760 -1.6386 -1.1338 6 6 1.7977 -0.1757 -2.4793 7 7 1.9113 -0.9309 -3.5500 8 14 1.3107 1.6196 -2.6502 9 1 1.1107 1.9438 -4.0855 10 1 0.0481 1.8629 -1.9072 11 1 2.3861 2.4793 -2.0937 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0641 2.2811 14 8 1.9981 1.2519 2.2504 15 6 2.7192 -0.5769 3.5493 16 1 2.0378 -1.3651 3.8693 17 6 2.8727 0.4830 4.6607 18 6 4.1096 -0.0232 5.4326 19 6 4.9093 -0.8177 4.4223 20 6 6.2309 -1.2297 4.4486 21 6 6.7537 -1.9583 3.3955 22 9 8.0435 -2.3593 3.4244 23 6 5.9523 -2.2770 2.3121 24 6 4.6345 -1.8660 2.2861 25 6 4.1103 -1.1359 3.3401 26 1 -0.3634 -1.0213 0.1138 27 1 -0.3634 0.6093 0.8277 28 1 -0.3633 0.4122 -0.9414 29 1 2.2358 -1.8415 -3.4690 30 1 3.0590 1.4682 4.2334 31 1 1.9936 0.4989 5.3050 32 1 4.6959 0.8185 5.8014 33 1 3.8033 -0.6631 6.2601 34 1 6.8555 -0.9813 5.2941 35 1 6.3576 -2.8461 1.4886 36 1 4.0101 -2.1144 1.4407 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850842182.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:49 Heat of formation + Delta-G solvation = -134.199571 kcal Electronic energy + Delta-G solvation = -21443.056035 eV Core-core repulsion = 17998.439396 eV Total energy + Delta-G solvation = -3444.616639 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.98064 -41.98284 -40.54024 -37.87748 -36.29291 -35.38213 -32.95364 -32.21632 -29.85339 -29.07948 -27.02996 -24.46964 -24.01633 -22.47906 -22.04319 -20.98664 -19.85268 -18.71555 -18.21247 -17.80790 -17.61523 -17.02606 -16.67560 -16.23764 -15.82183 -15.41378 -15.09340 -14.97300 -14.62724 -14.38425 -14.23425 -13.96434 -13.66188 -13.53826 -13.38618 -12.96767 -12.69507 -12.60301 -12.50808 -12.11146 -11.91010 -11.82232 -11.76221 -11.64932 -11.43978 -11.05672 -10.56645 -9.98287 -9.55934 -8.95001 -6.56517 -0.02418 0.15669 1.21197 1.37655 1.44551 1.63316 1.91179 2.33347 2.48160 2.89136 2.99181 3.34750 3.37351 3.71324 3.87307 3.97373 4.07454 4.14937 4.21943 4.30272 4.52287 4.55957 4.60651 4.61392 4.71987 4.84039 4.86977 5.01349 5.03779 5.09721 5.22137 5.27059 5.28892 5.43111 5.45562 5.78892 5.83466 5.93053 6.37526 6.85191 7.20469 8.47066 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019499 B = 0.005386 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.663170 B = 5197.024140 C = 6178.615694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.194 3.806 3 H 0.027 0.973 4 C -0.614 4.614 5 H 0.033 0.967 6 C -0.002 4.002 7 N -0.917 5.917 8 Si 1.070 2.930 9 H -0.273 1.273 10 H -0.239 1.239 11 H -0.272 1.272 12 O -0.354 6.354 13 C 0.454 3.546 14 O -0.540 6.540 15 C -0.040 4.040 16 H 0.145 0.855 17 C -0.104 4.104 18 C -0.070 4.070 19 C -0.056 4.056 20 C -0.140 4.140 21 C 0.094 3.906 22 F -0.142 7.142 23 C -0.164 4.164 24 C -0.080 4.080 25 C -0.121 4.121 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.258 0.742 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.166 0.834 35 H 0.141 0.859 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.389 0.831 20.779 21.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.139 3.861 3 H 0.044 0.956 4 C -0.652 4.652 5 H 0.051 0.949 6 C -0.203 4.203 7 N -0.552 5.552 8 Si 0.891 3.109 9 H -0.198 1.198 10 H -0.163 1.163 11 H -0.198 1.198 12 O -0.270 6.270 13 C 0.298 3.702 14 O -0.431 6.431 15 C -0.059 4.059 16 H 0.162 0.838 17 C -0.142 4.142 18 C -0.106 4.106 19 C -0.057 4.057 20 C -0.158 4.158 21 C 0.075 3.925 22 F -0.120 7.120 23 C -0.183 4.183 24 C -0.098 4.098 25 C -0.122 4.122 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.123 0.877 33 H 0.138 0.862 34 H 0.183 0.817 35 H 0.159 0.841 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.900 2.272 19.610 20.123 hybrid contribution 0.904 -1.826 -0.014 2.037 sum 4.804 0.447 19.596 20.181 Atomic orbital electron populations 1.22440 0.95924 1.01771 1.01758 1.20632 0.92407 0.92844 0.80170 0.95571 1.22016 1.41614 1.09791 0.91769 0.94912 1.26968 0.93964 1.08334 0.91044 1.70984 1.42500 1.09691 1.31990 0.83757 0.79084 0.70604 0.77491 1.19807 1.16333 1.19750 1.86541 1.75950 1.43387 1.21120 1.24280 0.73508 0.85883 0.86513 1.90554 1.49872 1.17794 1.84911 1.20880 0.94800 1.00443 0.89746 0.83770 1.22443 1.00441 0.96945 0.94326 1.21196 0.93732 0.99646 0.96033 1.20706 0.92460 0.96501 0.95997 1.20744 0.95595 1.00208 0.99261 1.17650 0.78825 0.99485 0.96525 1.91487 1.34836 1.88974 1.96723 1.21136 0.94002 1.03935 0.99231 1.20712 0.94901 0.96180 0.98028 1.20315 0.95260 1.00349 0.96231 0.92341 0.92898 0.91177 0.93217 0.90829 0.86598 0.87681 0.86159 0.81665 0.84102 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.13 9.22 71.98 0.66 -6.47 16 2 C 0.19 9.74 2.14 29.85 0.06 9.80 16 3 H 0.03 1.38 5.81 -2.39 -0.01 1.37 16 4 C -0.61 -35.66 9.16 25.60 0.23 -35.43 16 5 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 6 C 0.00 -0.14 5.29 84.65 0.45 0.31 16 7 N -0.92 -56.33 13.70 21.45 0.29 -56.04 16 8 Si 1.07 49.74 26.29 68.60 1.80 51.54 16 9 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.24 -9.85 5.75 99.48 0.57 -9.28 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 O -0.35 -16.06 8.69 -51.40 -0.45 -16.51 16 13 C 0.45 17.40 7.15 71.24 0.51 17.91 16 14 O -0.54 -22.93 14.71 21.98 0.32 -22.60 16 15 C -0.04 -1.07 3.37 -11.61 -0.04 -1.11 16 16 H 0.14 3.09 8.14 -2.39 -0.02 3.07 16 17 C -0.10 -2.01 6.35 31.51 0.20 -1.81 16 18 C -0.07 -0.98 6.77 30.52 0.21 -0.77 16 19 C -0.06 -1.21 6.14 -19.60 -0.12 -1.34 16 20 C -0.14 -2.92 10.02 22.34 0.22 -2.70 16 21 C 0.09 2.41 7.30 22.35 0.16 2.57 16 22 F -0.14 -3.61 17.27 44.97 0.78 -2.83 16 23 C -0.16 -4.73 10.03 22.29 0.22 -4.51 16 24 C -0.08 -2.57 9.62 22.30 0.21 -2.35 16 25 C -0.12 -3.39 5.60 -19.59 -0.11 -3.50 16 26 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.07 3.10 4.88 -2.38 -0.01 3.09 16 29 H 0.26 16.04 8.73 -92.70 -0.81 15.23 16 30 H 0.07 1.77 7.02 -2.39 -0.02 1.76 16 31 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.14 3.79 8.06 -2.92 -0.02 3.77 16 36 H 0.12 4.40 7.12 -2.91 -0.02 4.38 16 Total: -1.00 -69.69 305.37 6.56 -63.13 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.93 Total: 12.70 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 2.88 Total: -29.39 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.29 Total: -56.04 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.12 Total: -39.11 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.78 Total: -2.83 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 1.80 Total: 51.54 kcal Total: -69.69 6.56 -63.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842182.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.074 kcal (2) G-P(sol) polarization free energy of solvation -69.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds