Wall clock time and date at job start Tue Mar 31 2020 01:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47262 * 2 1 4 4 C 1.50697 * 109.47581 * 239.99904 * 2 1 3 5 5 H 1.07998 * 120.00244 * 240.00000 * 4 2 1 6 6 C 1.37883 * 119.99699 * 59.99888 * 4 2 1 7 7 N 1.31511 * 120.00014 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99718 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47259 * 90.00155 * 8 6 4 10 10 H 1.48508 * 109.47078 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.47547 * 329.99815 * 8 6 4 12 12 O 1.45203 * 109.47002 * 120.00048 * 2 1 3 13 13 C 1.34231 * 116.99931 * 270.00224 * 12 2 1 14 14 O 1.20833 * 120.00024 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00117 * 180.02562 * 13 12 2 16 16 H 1.09001 * 110.34506 * 60.67145 * 15 13 12 17 17 C 1.54349 * 110.30365 * 182.79654 * 15 13 12 18 18 C 1.54338 * 102.39128 * 145.28160 * 17 15 13 19 19 C 1.51381 * 105.17270 * 333.64143 * 18 17 15 20 20 C 1.38464 * 130.36693 * 197.51513 * 19 18 17 21 21 C 1.38325 * 120.19238 * 180.21439 * 20 19 18 22 22 F 1.35104 * 120.05722 * 179.71750 * 21 20 19 23 23 C 1.38474 * 119.87958 * 359.44603 * 21 20 19 24 24 C 1.38060 * 119.90908 * 0.27163 * 23 21 20 25 25 C 1.38232 * 109.75310 * 17.19778 * 19 18 17 26 26 H 1.08994 * 109.47586 * 300.00270 * 1 2 3 27 27 H 1.09004 * 109.47015 * 59.99889 * 1 2 3 28 28 H 1.08994 * 109.47063 * 179.97438 * 1 2 3 29 29 H 0.97001 * 119.99591 * 179.97438 * 7 6 4 30 30 H 1.08997 * 110.81780 * 27.05393 * 17 15 13 31 31 H 1.08999 * 110.82139 * 263.50835 * 17 15 13 32 32 H 1.09005 * 110.30479 * 214.71706 * 18 17 15 33 33 H 1.09000 * 110.30273 * 92.56430 * 18 17 15 34 34 H 1.08003 * 119.89824 * 359.95130 * 20 19 18 35 35 H 1.08004 * 120.04331 * 180.29744 * 23 21 20 36 36 H 1.08000 * 119.87356 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3430 -2.1617 -4.4118 10 1 2.4868 -0.1413 -5.1122 11 1 3.6295 -1.7582 -3.7121 12 8 2.0139 -0.6845 1.1856 13 6 2.2170 0.0640 2.2812 14 8 1.9981 1.2519 2.2504 15 6 2.7192 -0.5770 3.5492 16 1 3.6943 -1.0346 3.3821 17 6 2.8055 0.4694 4.6805 18 6 2.4309 -0.3593 5.9275 19 6 1.5649 -1.4871 5.4083 20 6 0.6963 -2.3322 6.0780 21 6 0.0031 -3.3084 5.3854 22 9 -0.8394 -4.1353 6.0425 23 6 0.1699 -3.4330 4.0164 24 6 1.0316 -2.5863 3.3480 25 6 1.7306 -1.6122 4.0416 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.7096 1.1618 -3.4844 30 1 2.0876 1.2738 4.5198 31 1 3.8179 0.8638 4.7671 32 1 1.8709 0.2530 6.6344 33 1 3.3285 -0.7584 6.3999 34 1 0.5630 -2.2316 7.1451 35 1 -0.3738 -4.1911 3.4722 36 1 1.1609 -2.6837 2.2802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850842183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:52 Heat of formation + Delta-G solvation = -118.606144 kcal Electronic energy + Delta-G solvation = -21370.283511 eV Core-core repulsion = 17926.343054 eV Total energy + Delta-G solvation = -3443.940457 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.92561 -40.60209 -39.00427 -36.10575 -35.04126 -33.30103 -31.67481 -29.66147 -28.81875 -27.85882 -25.34367 -23.07321 -22.86132 -21.27838 -20.73628 -19.37117 -17.27224 -17.14940 -16.63715 -16.39909 -16.20498 -15.62456 -15.45167 -14.64288 -14.60655 -14.27009 -13.69683 -13.53994 -12.98106 -12.88852 -12.48271 -12.32639 -12.08628 -11.88131 -11.67802 -11.52339 -11.21922 -11.08745 -10.92685 -10.82651 -10.77116 -10.40877 -10.30390 -9.73822 -9.56120 -8.95566 -8.93554 -8.52473 -8.45786 -6.20842 -4.28056 1.06857 1.20691 2.91642 3.22856 3.28178 3.31351 3.44475 3.70014 4.00660 4.30328 4.42670 4.47163 4.85778 4.87552 5.07242 5.09134 5.12525 5.21043 5.50263 5.52601 5.63794 5.77899 5.82165 5.92834 6.03637 6.10351 6.19966 6.30701 6.53277 6.61625 6.84745 6.87210 6.89555 7.13889 7.57117 7.69870 7.90686 8.11133 8.59356 8.84993 9.37670 10.86519 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022142 B = 0.004693 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.278164 B = 5964.515896 C = 6728.922463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.272 1.272 12 O -0.353 6.353 13 C 0.461 3.539 14 O -0.517 6.517 15 C -0.046 4.046 16 H 0.121 0.879 17 C -0.108 4.108 18 C -0.080 4.080 19 C -0.065 4.065 20 C -0.148 4.148 21 C 0.098 3.902 22 F -0.142 7.142 23 C -0.154 4.154 24 C -0.059 4.059 25 C -0.097 4.097 26 H 0.015 0.985 27 H 0.099 0.901 28 H 0.036 0.964 29 H 0.266 0.734 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.709 -5.554 15.885 16.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.064 0.936 4 C -0.559 4.559 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.738 3.262 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.269 6.269 13 C 0.303 3.697 14 O -0.406 6.406 15 C -0.065 4.065 16 H 0.138 0.862 17 C -0.145 4.145 18 C -0.117 4.117 19 C -0.065 4.065 20 C -0.167 4.167 21 C 0.079 3.921 22 F -0.121 7.121 23 C -0.173 4.173 24 C -0.076 4.076 25 C -0.098 4.098 26 H 0.034 0.966 27 H 0.117 0.883 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.508 -5.111 15.693 16.573 hybrid contribution -0.036 -0.522 -0.848 0.996 sum 1.472 -5.633 14.845 15.946 Atomic orbital electron populations 1.22151 0.97560 1.00076 1.01382 1.20643 0.91364 0.93930 0.77776 0.93614 1.21015 1.32549 1.13491 0.88868 0.91307 1.24886 0.94918 0.95061 0.99072 1.69899 1.36052 1.22492 1.24193 0.86283 0.79300 0.79149 0.81457 1.20354 1.20973 1.19623 1.86465 1.75638 1.43577 1.21268 1.23034 0.74911 0.85882 0.85886 1.90593 1.48646 1.16876 1.84532 1.20606 0.99267 0.94986 0.91632 0.86162 1.22349 1.03827 0.97217 0.91109 1.21110 0.98428 0.93956 0.98230 1.20362 0.95856 0.96343 0.93931 1.20421 0.99145 0.96586 1.00570 1.17537 0.92503 0.91388 0.90644 1.91486 1.68961 1.70349 1.81257 1.21077 1.01630 1.02164 0.92391 1.20849 0.93150 0.92155 1.01491 1.20205 0.98563 0.97014 0.94001 0.96587 0.88280 0.94459 0.92385 0.88819 0.89553 0.89984 0.89517 0.84993 0.84363 0.83407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.33 37.16 0.35 -3.52 16 2 C 0.22 5.66 2.56 -27.89 -0.07 5.59 16 3 H 0.05 1.34 7.16 -51.93 -0.37 0.97 16 4 C -0.52 -14.33 8.90 -34.44 -0.31 -14.64 16 5 H 0.07 1.86 7.81 -52.49 -0.41 1.44 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.01 11.32 55.43 0.63 -24.38 16 8 Si 0.91 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 O -0.35 -8.05 8.52 -39.26 -0.33 -8.38 16 13 C 0.46 9.31 7.19 36.00 0.26 9.57 16 14 O -0.52 -11.86 14.73 -18.76 -0.28 -12.13 16 15 C -0.05 -0.68 3.37 -91.89 -0.31 -0.99 16 16 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 17 C -0.11 -1.30 6.32 -25.32 -0.16 -1.46 16 18 C -0.08 -0.78 6.77 -26.85 -0.18 -0.97 16 19 C -0.06 -0.79 6.14 -104.21 -0.64 -1.43 16 20 C -0.15 -1.75 10.02 -39.47 -0.40 -2.14 16 21 C 0.10 1.27 7.30 -39.46 -0.29 0.98 16 22 F -0.14 -1.83 17.27 2.25 0.04 -1.79 16 23 C -0.15 -2.03 10.03 -39.56 -0.40 -2.42 16 24 C -0.06 -0.86 9.59 -39.54 -0.38 -1.24 16 25 C -0.10 -1.40 5.60 -104.19 -0.58 -1.98 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.10 2.67 6.07 -51.93 -0.32 2.35 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 30 H 0.09 1.31 7.07 -51.93 -0.37 0.94 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 35 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 36 H 0.15 2.33 7.02 -52.49 -0.37 1.96 16 LS Contribution 309.50 15.07 4.66 4.66 Total: -1.00 -30.16 309.50 -7.85 -38.01 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -4.35 Total: 1.27 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -3.20 Total: -13.03 kcal Atomic # 7 Polarization: -25.01 SS G_CDS: 0.63 Total: -24.38 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.61 Total: -20.52 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.16 -7.85 -38.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.599 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds