Wall clock time and date at job start Tue Mar 31 2020 01:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47262 * 2 1 4 4 C 1.50697 * 109.47581 * 239.99904 * 2 1 3 5 5 H 1.07998 * 120.00244 * 240.00000 * 4 2 1 6 6 C 1.37883 * 119.99699 * 59.99888 * 4 2 1 7 7 N 1.31511 * 120.00014 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99718 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47259 * 90.00155 * 8 6 4 10 10 H 1.48508 * 109.47078 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.47547 * 329.99815 * 8 6 4 12 12 O 1.45203 * 109.47002 * 120.00048 * 2 1 3 13 13 C 1.34231 * 116.99931 * 270.00224 * 12 2 1 14 14 O 1.20833 * 120.00024 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00117 * 180.02562 * 13 12 2 16 16 H 1.09001 * 110.34506 * 60.67145 * 15 13 12 17 17 C 1.54349 * 110.30365 * 182.79654 * 15 13 12 18 18 C 1.54338 * 102.39128 * 145.28160 * 17 15 13 19 19 C 1.51381 * 105.17270 * 333.64143 * 18 17 15 20 20 C 1.38464 * 130.36693 * 197.51513 * 19 18 17 21 21 C 1.38325 * 120.19238 * 180.21439 * 20 19 18 22 22 F 1.35104 * 120.05722 * 179.71750 * 21 20 19 23 23 C 1.38474 * 119.87958 * 359.44603 * 21 20 19 24 24 C 1.38060 * 119.90908 * 0.27163 * 23 21 20 25 25 C 1.38232 * 109.75310 * 17.19778 * 19 18 17 26 26 H 1.08994 * 109.47586 * 300.00270 * 1 2 3 27 27 H 1.09004 * 109.47015 * 59.99889 * 1 2 3 28 28 H 1.08994 * 109.47063 * 179.97438 * 1 2 3 29 29 H 0.97001 * 119.99591 * 179.97438 * 7 6 4 30 30 H 1.08997 * 110.81780 * 27.05393 * 17 15 13 31 31 H 1.08999 * 110.82139 * 263.50835 * 17 15 13 32 32 H 1.09005 * 110.30479 * 214.71706 * 18 17 15 33 33 H 1.09000 * 110.30273 * 92.56430 * 18 17 15 34 34 H 1.08003 * 119.89824 * 359.95130 * 20 19 18 35 35 H 1.08004 * 120.04331 * 180.29744 * 23 21 20 36 36 H 1.08000 * 119.87356 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3430 -2.1617 -4.4118 10 1 2.4868 -0.1413 -5.1122 11 1 3.6295 -1.7582 -3.7121 12 8 2.0139 -0.6845 1.1856 13 6 2.2170 0.0640 2.2812 14 8 1.9981 1.2519 2.2504 15 6 2.7192 -0.5770 3.5492 16 1 3.6943 -1.0346 3.3821 17 6 2.8055 0.4694 4.6805 18 6 2.4309 -0.3593 5.9275 19 6 1.5649 -1.4871 5.4083 20 6 0.6963 -2.3322 6.0780 21 6 0.0031 -3.3084 5.3854 22 9 -0.8394 -4.1353 6.0425 23 6 0.1699 -3.4330 4.0164 24 6 1.0316 -2.5863 3.3480 25 6 1.7306 -1.6122 4.0416 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.7096 1.1618 -3.4844 30 1 2.0876 1.2738 4.5198 31 1 3.8179 0.8638 4.7671 32 1 1.8709 0.2530 6.6344 33 1 3.3285 -0.7584 6.3999 34 1 0.5630 -2.2316 7.1451 35 1 -0.3738 -4.1911 3.4722 36 1 1.1609 -2.6837 2.2802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850842183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:52 Heat of formation + Delta-G solvation = -133.475550 kcal Electronic energy + Delta-G solvation = -21370.928297 eV Core-core repulsion = 17926.343054 eV Total energy + Delta-G solvation = -3444.585243 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.92744 -41.90455 -40.44669 -37.77121 -36.24684 -35.34135 -32.77080 -31.63131 -29.80724 -28.99343 -27.46713 -24.49872 -23.97021 -22.60774 -22.03057 -20.89981 -18.92418 -18.55304 -18.10379 -17.66654 -17.49150 -17.11189 -16.62390 -16.33622 -16.05349 -15.38411 -15.08265 -14.59086 -14.50292 -14.16657 -13.90724 -13.85370 -13.49727 -13.24582 -13.13698 -12.87409 -12.81653 -12.61467 -12.53818 -12.41432 -12.16587 -11.89642 -11.75166 -11.57048 -11.38927 -11.00300 -10.60477 -9.92807 -9.50520 -8.29324 -6.46176 0.03302 0.21621 1.30131 1.41859 1.43615 1.54770 1.98388 2.39669 2.55484 3.01650 3.03892 3.40557 3.40833 3.78493 3.92898 4.03046 4.12744 4.19524 4.32006 4.52496 4.58550 4.65075 4.74268 4.76117 4.82042 4.91606 5.02534 5.08240 5.12730 5.15921 5.25135 5.29332 5.47626 5.50770 5.61203 5.85948 5.91267 6.08147 6.59115 6.94631 7.25923 8.78400 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022142 B = 0.004693 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.278164 B = 5964.515896 C = 6728.922463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.218 3.782 3 H 0.006 0.994 4 C -0.546 4.546 5 H 0.069 0.931 6 C 0.017 3.983 7 N -0.918 5.918 8 Si 0.982 3.018 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.264 1.264 12 O -0.357 6.357 13 C 0.453 3.547 14 O -0.549 6.549 15 C -0.040 4.040 16 H 0.143 0.857 17 C -0.106 4.106 18 C -0.070 4.070 19 C -0.059 4.059 20 C -0.141 4.141 21 C 0.093 3.907 22 F -0.142 7.142 23 C -0.160 4.160 24 C -0.077 4.077 25 C -0.120 4.120 26 H 0.018 0.982 27 H 0.080 0.920 28 H 0.045 0.955 29 H 0.270 0.730 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.163 0.837 35 H 0.149 0.851 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.541 -6.587 17.564 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.583 4.583 5 H 0.087 0.913 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.805 3.195 9 H -0.193 1.193 10 H -0.204 1.204 11 H -0.189 1.189 12 O -0.273 6.273 13 C 0.298 3.702 14 O -0.440 6.440 15 C -0.059 4.059 16 H 0.160 0.840 17 C -0.143 4.143 18 C -0.106 4.106 19 C -0.059 4.059 20 C -0.160 4.160 21 C 0.074 3.926 22 F -0.121 7.121 23 C -0.178 4.178 24 C -0.096 4.096 25 C -0.120 4.120 26 H 0.037 0.963 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.137 0.863 34 H 0.180 0.820 35 H 0.166 0.834 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.340 -6.152 17.398 18.601 hybrid contribution -0.317 -0.174 -1.304 1.353 sum 2.023 -6.326 16.094 17.410 Atomic orbital electron populations 1.21960 0.97010 1.00264 1.00522 1.20308 0.91786 0.92052 0.79335 0.97603 1.21283 1.33340 1.13870 0.89851 0.91325 1.25822 0.94711 0.95617 1.02150 1.70021 1.36673 1.23668 1.25190 0.85194 0.79042 0.78094 0.77161 1.19291 1.20370 1.18861 1.86476 1.75921 1.43542 1.21320 1.24268 0.73765 0.85690 0.86514 1.90572 1.50022 1.18417 1.85028 1.20846 1.00077 0.95866 0.89070 0.83984 1.22418 1.04743 0.96140 0.91020 1.21174 0.99451 0.92749 0.97216 1.20652 0.95660 0.96721 0.92882 1.20716 0.97872 0.95401 1.01994 1.17662 0.92667 0.91762 0.90521 1.91488 1.69003 1.70432 1.81134 1.21169 1.01454 1.02207 0.92991 1.20766 0.94595 0.93468 1.00730 1.20293 0.99202 0.97175 0.95328 0.96268 0.90173 0.93591 0.92028 0.91214 0.87108 0.87847 0.86298 0.81990 0.83359 0.85517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.28 9.33 71.98 0.67 -6.61 16 2 C 0.22 11.98 2.56 29.85 0.08 12.06 16 3 H 0.01 0.38 7.16 -2.39 -0.02 0.36 16 4 C -0.55 -30.75 8.90 25.60 0.23 -30.52 16 5 H 0.07 3.77 7.81 -2.91 -0.02 3.74 16 6 C 0.02 0.92 5.30 84.66 0.45 1.36 16 7 N -0.92 -52.72 11.32 21.45 0.24 -52.48 16 8 Si 0.98 42.62 29.54 68.60 2.03 44.65 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 12 O -0.36 -16.85 8.52 -51.43 -0.44 -17.29 16 13 C 0.45 18.79 7.19 71.23 0.51 19.31 16 14 O -0.55 -26.15 14.73 21.94 0.32 -25.82 16 15 C -0.04 -1.14 3.37 -11.61 -0.04 -1.18 16 16 H 0.14 3.37 8.14 -2.39 -0.02 3.35 16 17 C -0.11 -2.32 6.32 31.51 0.20 -2.12 16 18 C -0.07 -1.07 6.77 30.52 0.21 -0.87 16 19 C -0.06 -1.28 6.14 -19.60 -0.12 -1.40 16 20 C -0.14 -2.89 10.02 22.34 0.22 -2.66 16 21 C 0.09 2.22 7.30 22.35 0.16 2.38 16 22 F -0.14 -3.39 17.27 44.97 0.78 -2.61 16 23 C -0.16 -4.12 10.03 22.28 0.22 -3.90 16 24 C -0.08 -2.29 9.59 22.29 0.21 -2.08 16 25 C -0.12 -3.31 5.60 -19.59 -0.11 -3.42 16 26 H 0.02 0.92 8.14 -2.39 -0.02 0.91 16 27 H 0.08 4.48 6.07 -2.38 -0.01 4.47 16 28 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.07 1.89 7.07 -2.39 -0.02 1.87 16 31 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 36 H 0.13 4.21 7.02 -2.91 -0.02 4.19 16 Total: -1.00 -67.25 309.50 6.92 -60.33 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 1.10 Total: 12.86 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 2.90 Total: -19.64 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: 0.24 Total: -52.48 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -0.11 Total: -43.11 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.78 Total: -2.61 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -67.25 6.92 -60.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.144 kcal (2) G-P(sol) polarization free energy of solvation -67.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds