Wall clock time and date at job start Tue Mar 31 2020 01:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.50701 * 109.47097 * 120.00098 * 2 1 3 5 5 H 1.07995 * 119.99918 * 119.99713 * 4 2 1 6 6 C 1.37880 * 119.99755 * 300.00020 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.46938 * 60.00050 * 8 6 4 10 10 H 1.48496 * 109.46873 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47134 * 299.99873 * 8 6 4 12 12 O 1.45206 * 109.47129 * 239.99943 * 2 1 3 13 13 C 1.34230 * 116.99709 * 90.00108 * 12 2 1 14 14 O 1.20824 * 120.00468 * 0.02562 * 13 12 2 15 15 C 1.50700 * 119.99804 * 179.97438 * 13 12 2 16 16 H 1.09003 * 110.26761 * 300.70623 * 15 13 12 17 17 C 1.54342 * 110.30482 * 178.62716 * 15 13 12 18 18 C 1.54344 * 102.39608 * 214.72384 * 17 15 13 19 19 C 1.51371 * 105.17018 * 26.35417 * 18 17 15 20 20 C 1.38467 * 130.36854 * 162.82955 * 19 18 17 21 21 C 1.38323 * 120.19734 * 179.97438 * 20 19 18 22 22 F 1.35103 * 120.06023 * 180.02562 * 21 20 19 23 23 C 1.38482 * 119.88049 * 0.02562 * 21 20 19 24 24 C 1.38062 * 119.90558 * 359.97438 * 23 21 20 25 25 C 1.38374 * 120.30241 * 359.91190 * 24 23 21 26 26 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 27 27 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 29 29 H 0.97001 * 119.99839 * 179.97438 * 7 6 4 30 30 H 1.09006 * 110.82093 * 332.95522 * 17 15 13 31 31 H 1.08997 * 110.82002 * 96.49900 * 17 15 13 32 32 H 1.09000 * 110.30136 * 145.27790 * 18 17 15 33 33 H 1.08997 * 110.30438 * 267.43212 * 18 17 15 34 34 H 1.08002 * 119.89844 * 359.97438 * 20 19 18 35 35 H 1.08003 * 120.04455 * 180.02562 * 23 21 20 36 36 H 1.08008 * 119.86688 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3213 -1.1204 4.0080 9 1 3.8062 -1.1210 4.0082 10 1 1.8259 -0.4206 5.2204 11 1 1.8257 -2.5203 4.0077 12 8 2.0140 -0.6845 -1.1856 13 6 2.2172 0.0640 -2.2811 14 8 1.9983 1.2519 -2.2504 15 6 2.7194 -0.5770 -3.5492 16 1 3.6832 -1.0552 -3.3745 17 6 2.8396 0.4765 -4.6706 18 6 2.4611 -0.3338 -5.9285 19 6 1.5662 -1.4473 -5.4279 20 6 0.6920 -2.2727 -6.1147 21 6 -0.0329 -3.2362 -5.4368 22 9 -0.8847 -4.0404 -6.1098 23 6 0.1162 -3.3751 -4.0671 24 6 0.9880 -2.5519 -3.3826 25 6 1.7157 -1.5890 -4.0593 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 0.7089 1.1614 3.4843 30 1 2.1371 1.2946 -4.5107 31 1 3.8610 0.8502 -4.7433 32 1 1.9216 0.2959 -6.6359 33 1 3.3550 -0.7478 -6.3949 34 1 0.5757 -2.1638 -7.1829 35 1 -0.4481 -4.1268 -3.5352 36 1 1.1034 -2.6605 -2.3142 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850842184.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:54 Heat of formation + Delta-G solvation = -133.484101 kcal Electronic energy + Delta-G solvation = -21364.311557 eV Core-core repulsion = 17919.725943 eV Total energy + Delta-G solvation = -3444.585614 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.92922 -41.90404 -40.44532 -37.77201 -36.24620 -35.34077 -32.77572 -31.63345 -29.80845 -28.99637 -27.46529 -24.50143 -23.97019 -22.60704 -22.03497 -20.89652 -18.92515 -18.55725 -18.10171 -17.66687 -17.48511 -17.11583 -16.62590 -16.34040 -16.05631 -15.38915 -15.08022 -14.59481 -14.50040 -14.16428 -13.90987 -13.85086 -13.49732 -13.24297 -13.13504 -12.87371 -12.82194 -12.62123 -12.54278 -12.40143 -12.17537 -11.89592 -11.75260 -11.57468 -11.38949 -11.00663 -10.60163 -9.93278 -9.50445 -8.29024 -6.46063 0.02931 0.21385 1.30046 1.41823 1.45355 1.53414 1.98267 2.39779 2.55273 3.01845 3.03655 3.40088 3.40968 3.78529 3.92646 4.02945 4.12514 4.19249 4.31770 4.52412 4.58459 4.64939 4.74162 4.76088 4.81972 4.91282 5.02442 5.08147 5.12444 5.15906 5.25059 5.29194 5.47506 5.50411 5.61139 5.85689 5.91241 6.08167 6.58969 6.94559 7.25978 8.78461 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022333 B = 0.004667 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.473782 B = 5998.102712 C = 6749.353145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.219 3.781 3 H 0.006 0.994 4 C -0.547 4.547 5 H 0.069 0.931 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.982 3.018 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.264 1.264 12 O -0.357 6.357 13 C 0.453 3.547 14 O -0.549 6.549 15 C -0.040 4.040 16 H 0.142 0.858 17 C -0.106 4.106 18 C -0.069 4.069 19 C -0.059 4.059 20 C -0.141 4.141 21 C 0.093 3.907 22 F -0.142 7.142 23 C -0.159 4.159 24 C -0.078 4.078 25 C -0.119 4.119 26 H 0.018 0.982 27 H 0.045 0.955 28 H 0.080 0.920 29 H 0.271 0.729 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.163 0.837 35 H 0.149 0.851 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.553 -6.521 -17.594 18.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.585 4.585 5 H 0.087 0.913 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.805 3.195 9 H -0.192 1.192 10 H -0.203 1.203 11 H -0.189 1.189 12 O -0.273 6.273 13 C 0.298 3.702 14 O -0.440 6.440 15 C -0.059 4.059 16 H 0.160 0.840 17 C -0.144 4.144 18 C -0.106 4.106 19 C -0.059 4.059 20 C -0.160 4.160 21 C 0.074 3.926 22 F -0.120 7.120 23 C -0.178 4.178 24 C -0.096 4.096 25 C -0.120 4.120 26 H 0.037 0.963 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.137 0.863 34 H 0.180 0.820 35 H 0.167 0.833 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.348 -6.085 -17.426 18.607 hybrid contribution -0.314 -0.173 1.294 1.343 sum 2.033 -6.258 -16.132 17.423 Atomic orbital electron populations 1.21962 0.97003 1.00261 1.00520 1.20307 0.91792 0.92039 0.79322 0.97616 1.21256 1.33429 1.13920 0.89862 0.91316 1.25820 0.94685 0.95622 1.02140 1.70013 1.36583 1.23674 1.25260 0.85250 0.78835 0.78613 0.76826 1.19243 1.20331 1.18878 1.86477 1.75924 1.43554 1.21330 1.24269 0.73768 0.85693 0.86513 1.90568 1.50013 1.18428 1.85016 1.20844 0.99872 0.96107 0.89030 0.84029 1.22421 1.04715 0.96136 0.91078 1.21170 0.99055 0.93134 0.97220 1.20702 0.95725 0.96688 0.92790 1.20717 0.97572 0.95690 1.02000 1.17662 0.92335 0.92313 0.90289 1.91488 1.68463 1.71750 1.80347 1.21168 1.01447 1.02309 0.92879 1.20721 0.94468 0.93682 1.00730 1.20296 0.98985 0.97367 0.95339 0.96278 0.93587 0.90162 0.92017 0.91179 0.87101 0.87838 0.86289 0.81979 0.83344 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.28 9.33 71.98 0.67 -6.61 16 2 C 0.22 12.00 2.56 29.85 0.08 12.08 16 3 H 0.01 0.37 7.16 -2.39 -0.02 0.36 16 4 C -0.55 -30.83 8.90 25.60 0.23 -30.60 16 5 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 6 C 0.02 0.94 5.30 84.66 0.45 1.39 16 7 N -0.92 -52.73 11.32 21.45 0.24 -52.48 16 8 Si 0.98 42.60 29.54 68.60 2.03 44.62 16 9 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 10 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 11 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 12 O -0.36 -16.88 8.61 -51.42 -0.44 -17.32 16 13 C 0.45 18.81 7.17 71.24 0.51 19.32 16 14 O -0.55 -26.16 14.72 21.97 0.32 -25.84 16 15 C -0.04 -1.14 3.37 -11.61 -0.04 -1.18 16 16 H 0.14 3.37 8.14 -2.39 -0.02 3.35 16 17 C -0.11 -2.32 6.34 31.51 0.20 -2.12 16 18 C -0.07 -1.07 6.77 30.52 0.21 -0.87 16 19 C -0.06 -1.28 6.14 -19.56 -0.12 -1.40 16 20 C -0.14 -2.88 10.02 22.34 0.22 -2.66 16 21 C 0.09 2.22 7.30 22.35 0.16 2.38 16 22 F -0.14 -3.38 17.27 44.97 0.78 -2.60 16 23 C -0.16 -4.11 10.03 22.29 0.22 -3.89 16 24 C -0.08 -2.30 9.60 22.26 0.21 -2.09 16 25 C -0.12 -3.31 5.60 -19.58 -0.11 -3.42 16 26 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.08 4.49 6.07 -2.39 -0.01 4.47 16 29 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 30 H 0.07 1.90 7.05 -2.38 -0.02 1.89 16 31 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 35 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 36 H 0.13 4.19 7.07 -2.91 -0.02 4.17 16 Total: -1.00 -67.25 309.62 6.92 -60.34 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 1.10 Total: 12.95 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: 2.90 Total: -19.66 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.24 Total: -52.48 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -0.12 Total: -43.16 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.78 Total: -2.60 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -67.25 6.92 -60.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842184.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.148 kcal (2) G-P(sol) polarization free energy of solvation -67.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds