Wall clock time and date at job start Tue Mar 31 2020 01:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 O 1.45198 * 109.46967 * 240.00458 * 2 1 3 13 13 C 1.34231 * 117.00230 * 90.00189 * 12 2 1 14 14 O 1.20830 * 119.99768 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00448 * 179.97438 * 13 12 2 16 16 H 1.09006 * 110.26550 * 57.92384 * 15 13 12 17 17 C 1.54347 * 110.30664 * 179.97438 * 15 13 12 18 18 C 1.54347 * 102.38881 * 92.56201 * 17 15 13 19 19 C 1.51375 * 105.17343 * 26.36050 * 18 17 15 20 20 C 1.38453 * 130.37137 * 162.82850 * 19 18 17 21 21 C 1.38327 * 120.19818 * 180.09801 * 20 19 18 22 22 F 1.35101 * 120.06304 * 179.89017 * 21 20 19 23 23 C 1.38479 * 119.87839 * 359.88627 * 21 20 19 24 24 C 1.38061 * 119.90995 * 0.04131 * 23 21 20 25 25 C 1.38230 * 109.75506 * 342.80832 * 19 18 17 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.08995 * 110.81856 * 210.79042 * 17 15 13 31 31 H 1.09004 * 110.81733 * 334.33761 * 17 15 13 32 32 H 1.09004 * 110.29805 * 145.28355 * 18 17 15 33 33 H 1.09000 * 110.30438 * 267.33642 * 18 17 15 34 34 H 1.08004 * 119.90252 * 359.96331 * 20 19 18 35 35 H 1.08004 * 120.04416 * 180.02562 * 23 21 20 36 36 H 1.07997 * 119.87605 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0642 -2.2811 14 8 1.9974 1.2519 -2.2505 15 6 2.7193 -0.5767 -3.5492 16 1 2.0378 -1.3650 -3.8694 17 6 2.8716 0.4830 -4.6610 18 6 4.3455 0.9148 -4.5073 19 6 5.0454 -0.2776 -3.8908 20 6 6.3928 -0.5872 -3.8173 21 6 6.8061 -1.7525 -3.1971 22 9 8.1215 -2.0530 -3.1289 23 6 5.8691 -2.6105 -2.6461 24 6 4.5256 -2.3007 -2.7183 25 6 4.1109 -1.1347 -3.3404 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 0.7089 1.1611 3.4845 30 1 2.6972 0.0425 -5.6426 31 1 2.2012 1.3249 -4.4882 32 1 4.7761 1.1437 -5.4821 33 1 4.4193 1.7804 -3.8491 34 1 7.1233 0.0820 -4.2474 35 1 6.1889 -3.5209 -2.1609 36 1 3.7953 -2.9704 -2.2888 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850842185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:57 Heat of formation + Delta-G solvation = -117.296483 kcal Electronic energy + Delta-G solvation = -21441.517812 eV Core-core repulsion = 17997.634146 eV Total energy + Delta-G solvation = -3443.883666 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.89001 -40.62775 -38.94641 -36.10825 -34.92695 -33.28183 -31.63231 -29.65101 -28.77997 -27.78804 -25.33417 -23.28755 -22.73424 -21.19704 -20.77017 -19.33091 -17.38797 -16.98078 -16.69780 -16.54977 -15.78510 -15.63404 -15.47273 -14.63476 -14.56729 -14.15457 -13.84253 -13.58189 -12.95148 -12.87433 -12.48487 -12.27427 -11.96893 -11.87213 -11.57498 -11.34288 -11.17273 -11.10538 -10.94368 -10.83149 -10.78363 -10.40417 -10.29707 -9.80130 -9.56338 -8.93624 -8.91037 -8.51455 -8.39630 -6.19596 -4.26437 1.09657 1.24475 2.91662 3.25368 3.28749 3.30606 3.44645 3.77202 4.06371 4.32829 4.44389 4.50216 4.89157 4.90227 5.04607 5.13496 5.20732 5.21803 5.57215 5.64499 5.67804 5.76524 5.86325 5.97944 6.05973 6.08445 6.18458 6.31267 6.54443 6.61643 6.85967 6.88060 6.89115 7.14746 7.58108 7.70786 7.91443 8.12430 8.60758 8.86316 9.38956 10.87831 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.005623 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.190413 B = 4978.525840 C = 6205.834988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.045 0.955 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.285 1.285 10 H -0.274 1.274 11 H -0.275 1.275 12 O -0.352 6.352 13 C 0.463 3.537 14 O -0.517 6.517 15 C -0.046 4.046 16 H 0.114 0.886 17 C -0.108 4.108 18 C -0.083 4.083 19 C -0.060 4.060 20 C -0.148 4.148 21 C 0.101 3.899 22 F -0.142 7.142 23 C -0.156 4.156 24 C -0.053 4.053 25 C -0.099 4.099 26 H 0.037 0.963 27 H 0.099 0.901 28 H 0.015 0.985 29 H 0.267 0.733 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.635 -4.208 -14.209 16.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.164 3.836 3 H 0.063 0.937 4 C -0.559 4.559 5 H 0.086 0.914 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.737 3.263 9 H -0.210 1.210 10 H -0.199 1.199 11 H -0.200 1.200 12 O -0.268 6.268 13 C 0.305 3.695 14 O -0.407 6.407 15 C -0.066 4.066 16 H 0.132 0.868 17 C -0.146 4.146 18 C -0.120 4.120 19 C -0.060 4.060 20 C -0.167 4.167 21 C 0.082 3.918 22 F -0.120 7.120 23 C -0.174 4.174 24 C -0.071 4.071 25 C -0.099 4.099 26 H 0.056 0.944 27 H 0.118 0.882 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.513 -3.746 -13.983 15.873 hybrid contribution 0.501 -0.403 1.059 1.239 sum 7.014 -4.149 -12.923 15.278 Atomic orbital electron populations 1.22164 0.97557 1.00101 1.01409 1.20629 0.91334 0.93883 0.77794 0.93678 1.20974 1.32512 1.13482 0.88889 0.91397 1.24879 0.94918 0.95085 0.99036 1.69887 1.36034 1.22521 1.24278 0.86349 0.79257 0.79567 0.81077 1.20995 1.19904 1.19989 1.86474 1.75510 1.43554 1.21222 1.22956 0.74618 0.85886 0.86003 1.90581 1.48928 1.16732 1.84410 1.20475 0.94776 0.99063 0.92242 0.86785 1.22317 0.96886 0.98628 0.96732 1.21117 0.94208 0.95749 1.00920 1.20444 0.92188 0.96250 0.97105 1.20438 0.95752 0.97059 1.03466 1.17517 0.77684 0.95667 1.00939 1.91485 1.32667 1.93203 1.94664 1.21023 0.92587 1.00946 1.02882 1.20588 0.95107 0.95851 0.95568 1.20168 0.94157 0.95410 1.00174 0.94419 0.88241 0.96545 0.92340 0.89879 0.88316 0.90100 0.89162 0.84965 0.84405 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.33 37.16 0.35 -3.54 16 2 C 0.22 5.77 2.56 -27.89 -0.07 5.70 16 3 H 0.05 1.34 7.16 -51.93 -0.37 0.97 16 4 C -0.52 -14.58 8.90 -34.44 -0.31 -14.89 16 5 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.26 11.32 55.43 0.63 -24.64 16 8 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 12 O -0.35 -8.22 9.86 -39.26 -0.39 -8.61 16 13 C 0.46 9.43 7.23 36.00 0.26 9.69 16 14 O -0.52 -11.76 14.69 -18.75 -0.28 -12.04 16 15 C -0.05 -0.68 3.38 -91.89 -0.31 -0.99 16 16 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 17 C -0.11 -1.30 6.38 -25.32 -0.16 -1.47 16 18 C -0.08 -0.99 6.76 -26.85 -0.18 -1.17 16 19 C -0.06 -0.81 6.14 -104.21 -0.64 -1.45 16 20 C -0.15 -1.91 10.02 -39.47 -0.40 -2.31 16 21 C 0.10 1.37 7.30 -39.46 -0.29 1.08 16 22 F -0.14 -1.92 17.27 2.25 0.04 -1.88 16 23 C -0.16 -2.05 10.03 -39.56 -0.40 -2.45 16 24 C -0.05 -0.75 10.04 -39.54 -0.40 -1.14 16 25 C -0.10 -1.45 5.43 -104.19 -0.57 -2.01 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.10 2.68 6.07 -51.93 -0.32 2.36 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.10 1.30 6.98 -51.93 -0.36 0.94 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 35 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 36 H 0.14 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 312.11 15.07 4.70 4.70 Total: -1.00 -30.71 312.11 -7.91 -38.63 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -4.40 Total: 1.03 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -3.20 Total: -13.31 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.63 Total: -24.64 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.66 Total: -20.65 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.71 -7.91 -38.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.671 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds