Wall clock time and date at job start Tue Mar 31 2020 01:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 O 1.45198 * 109.46967 * 240.00458 * 2 1 3 13 13 C 1.34231 * 117.00230 * 90.00189 * 12 2 1 14 14 O 1.20830 * 119.99768 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00448 * 179.97438 * 13 12 2 16 16 H 1.09006 * 110.26550 * 57.92384 * 15 13 12 17 17 C 1.54347 * 110.30664 * 179.97438 * 15 13 12 18 18 C 1.54347 * 102.38881 * 92.56201 * 17 15 13 19 19 C 1.51375 * 105.17343 * 26.36050 * 18 17 15 20 20 C 1.38453 * 130.37137 * 162.82850 * 19 18 17 21 21 C 1.38327 * 120.19818 * 180.09801 * 20 19 18 22 22 F 1.35101 * 120.06304 * 179.89017 * 21 20 19 23 23 C 1.38479 * 119.87839 * 359.88627 * 21 20 19 24 24 C 1.38061 * 119.90995 * 0.04131 * 23 21 20 25 25 C 1.38230 * 109.75506 * 342.80832 * 19 18 17 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.08995 * 110.81856 * 210.79042 * 17 15 13 31 31 H 1.09004 * 110.81733 * 334.33761 * 17 15 13 32 32 H 1.09004 * 110.29805 * 145.28355 * 18 17 15 33 33 H 1.09000 * 110.30438 * 267.33642 * 18 17 15 34 34 H 1.08004 * 119.90252 * 359.96331 * 20 19 18 35 35 H 1.08004 * 120.04416 * 180.02562 * 23 21 20 36 36 H 1.07997 * 119.87605 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0642 -2.2811 14 8 1.9974 1.2519 -2.2505 15 6 2.7193 -0.5767 -3.5492 16 1 2.0378 -1.3650 -3.8694 17 6 2.8716 0.4830 -4.6610 18 6 4.3455 0.9148 -4.5073 19 6 5.0454 -0.2776 -3.8908 20 6 6.3928 -0.5872 -3.8173 21 6 6.8061 -1.7525 -3.1971 22 9 8.1215 -2.0530 -3.1289 23 6 5.8691 -2.6105 -2.6461 24 6 4.5256 -2.3007 -2.7183 25 6 4.1109 -1.1347 -3.3404 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 0.7089 1.1611 3.4845 30 1 2.6972 0.0425 -5.6426 31 1 2.2012 1.3249 -4.4882 32 1 4.7761 1.1437 -5.4821 33 1 4.4193 1.7804 -3.8491 34 1 7.1233 0.0820 -4.2474 35 1 6.1889 -3.5209 -2.1609 36 1 3.7953 -2.9704 -2.2888 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850842185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:56 Heat of formation + Delta-G solvation = -132.512938 kcal Electronic energy + Delta-G solvation = -21442.177647 eV Core-core repulsion = 17997.634146 eV Total energy + Delta-G solvation = -3444.543501 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.94048 -41.94783 -40.40355 -37.76827 -36.17415 -35.33681 -32.74594 -31.63507 -29.79713 -28.96202 -27.45896 -24.67968 -23.90908 -22.57788 -22.11326 -20.85323 -18.98865 -18.54110 -18.09676 -17.75848 -17.38783 -17.03134 -16.63904 -16.38862 -15.96952 -15.35050 -15.12557 -14.64108 -14.57802 -14.25969 -13.94056 -13.80435 -13.36962 -13.27964 -13.01379 -12.97978 -12.82664 -12.64308 -12.39020 -12.26007 -12.16022 -11.97177 -11.81604 -11.58637 -11.42580 -10.99958 -10.60658 -9.93338 -9.51517 -8.29694 -6.46233 0.01204 0.21978 1.31761 1.40271 1.43606 1.51618 1.99182 2.38043 2.59122 3.00981 3.03608 3.38788 3.43644 3.81511 3.92261 4.00817 4.12628 4.22602 4.29783 4.53698 4.59110 4.67036 4.70536 4.77592 4.83336 4.91273 4.98834 5.06174 5.09574 5.17367 5.19474 5.30723 5.48019 5.49648 5.63078 5.85672 5.92211 6.09046 6.58603 6.95958 7.25670 8.77748 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.005623 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.190413 B = 4978.525840 C = 6205.834988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.219 3.781 3 H 0.003 0.997 4 C -0.547 4.547 5 H 0.067 0.933 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.979 3.021 9 H -0.277 1.277 10 H -0.262 1.262 11 H -0.271 1.271 12 O -0.358 6.358 13 C 0.455 3.545 14 O -0.546 6.546 15 C -0.040 4.040 16 H 0.141 0.859 17 C -0.103 4.103 18 C -0.082 4.082 19 C -0.064 4.064 20 C -0.149 4.149 21 C 0.092 3.908 22 F -0.142 7.142 23 C -0.159 4.159 24 C -0.064 4.064 25 C -0.119 4.119 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.025 0.975 29 H 0.271 0.729 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.071 0.929 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.459 -5.349 -15.080 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.166 3.834 3 H 0.021 0.979 4 C -0.585 4.585 5 H 0.085 0.915 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.802 3.198 9 H -0.202 1.202 10 H -0.186 1.186 11 H -0.196 1.196 12 O -0.274 6.274 13 C 0.300 3.700 14 O -0.437 6.437 15 C -0.059 4.059 16 H 0.159 0.841 17 C -0.139 4.139 18 C -0.119 4.119 19 C -0.065 4.065 20 C -0.168 4.168 21 C 0.073 3.927 22 F -0.121 7.121 23 C -0.177 4.177 24 C -0.082 4.082 25 C -0.119 4.119 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.141 0.859 31 H 0.103 0.897 32 H 0.134 0.866 33 H 0.089 0.911 34 H 0.172 0.828 35 H 0.174 0.826 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.338 -4.890 -14.880 17.297 hybrid contribution 0.285 -0.010 1.273 1.305 sum 7.623 -4.900 -13.607 16.349 Atomic orbital electron populations 1.21979 0.96650 1.00468 1.00849 1.20299 0.92021 0.91852 0.79275 0.97880 1.21257 1.33345 1.13880 0.89981 0.91503 1.25800 0.94729 0.95655 1.02065 1.70009 1.36591 1.23621 1.25237 0.85294 0.78695 0.78825 0.76998 1.20171 1.18623 1.19584 1.86470 1.75934 1.43641 1.21370 1.24192 0.73493 0.85755 0.86589 1.90562 1.50091 1.18177 1.84903 1.20674 0.95347 1.00314 0.89554 0.84135 1.22407 0.96613 0.97486 0.97442 1.21165 0.94227 0.94317 1.02194 1.20675 0.92358 0.96466 0.96958 1.20690 0.96039 0.97107 1.02960 1.17695 0.77718 0.96084 1.01167 1.91483 1.32699 1.93242 1.94689 1.21243 0.92244 1.01619 1.02642 1.20757 0.95689 0.96065 0.95726 1.20301 0.94186 0.96156 1.01301 0.93418 0.90195 0.95624 0.92006 0.85889 0.89749 0.86618 0.91053 0.82792 0.82638 0.83874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.27 9.33 71.98 0.67 -6.60 16 2 C 0.22 12.04 2.56 29.85 0.08 12.12 16 3 H 0.00 0.21 7.16 -2.39 -0.02 0.19 16 4 C -0.55 -31.12 8.90 25.60 0.23 -30.89 16 5 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 6 C 0.02 0.96 5.30 84.66 0.45 1.40 16 7 N -0.92 -52.84 11.32 21.45 0.24 -52.60 16 8 Si 0.98 43.01 29.54 68.60 2.03 45.03 16 9 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 10 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 O -0.36 -17.03 9.86 -51.43 -0.51 -17.53 16 13 C 0.46 18.72 7.23 71.23 0.51 19.24 16 14 O -0.55 -25.56 14.69 21.95 0.32 -25.24 16 15 C -0.04 -1.13 3.38 -11.61 -0.04 -1.17 16 16 H 0.14 3.16 8.14 -2.38 -0.02 3.14 16 17 C -0.10 -2.24 6.38 31.51 0.20 -2.04 16 18 C -0.08 -1.79 6.76 30.52 0.21 -1.59 16 19 C -0.06 -1.63 6.14 -19.60 -0.12 -1.75 16 20 C -0.15 -3.57 10.02 22.34 0.22 -3.34 16 21 C 0.09 2.35 7.30 22.35 0.16 2.52 16 22 F -0.14 -3.63 17.27 44.97 0.78 -2.85 16 23 C -0.16 -3.97 10.03 22.29 0.22 -3.75 16 24 C -0.06 -1.74 10.04 22.29 0.22 -1.52 16 25 C -0.12 -3.33 5.43 -19.58 -0.11 -3.44 16 26 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.08 4.42 6.07 -2.39 -0.01 4.40 16 28 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.27 14.62 8.31 -92.71 -0.77 13.84 16 30 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 2.13 6.98 -2.38 -0.02 2.12 16 32 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 35 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 36 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -67.38 312.11 6.87 -60.51 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 1.09 Total: 13.49 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 2.91 Total: -20.81 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.24 Total: -52.60 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -0.18 Total: -42.77 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.78 Total: -2.85 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -67.38 6.87 -60.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.003 kcal (2) G-P(sol) polarization free energy of solvation -67.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds