Wall clock time and date at job start Tue Mar 31 2020 00:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35619 * 119.99964 * 2 1 4 4 C 1.41553 * 120.00102 * 180.02562 * 3 2 1 5 5 O 1.21782 * 119.99652 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00406 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00212 * 180.02562 * 6 4 3 8 8 C 1.50699 * 109.47091 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99887 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99786 * 179.97438 * 8 7 6 11 11 C 1.37097 * 119.99600 * 179.97438 * 10 8 7 12 12 H 1.08002 * 120.00544 * 359.97438 * 11 10 8 13 13 C 1.38952 * 119.99791 * 180.02562 * 11 10 8 14 14 N 1.31413 * 120.00383 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 120.00171 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47148 * 90.00162 * 15 13 11 17 17 H 1.48498 * 109.47453 * 210.00304 * 15 13 11 18 18 H 1.48497 * 109.46785 * 330.00230 * 15 13 11 19 19 C 1.41608 * 119.99771 * 180.02562 * 2 1 3 20 20 C 1.37952 * 126.10459 * 294.70782 * 19 2 1 21 21 C 1.40320 * 106.52753 * 179.90907 * 20 19 2 22 22 C 1.35150 * 107.20525 * 0.36237 * 21 20 19 23 23 O 1.34019 * 109.03667 * 359.77198 * 22 21 20 24 24 H 1.09002 * 109.47152 * 269.99840 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.99941 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.99922 * 1 2 3 27 27 H 1.07996 * 120.00270 * 359.97438 * 3 2 1 28 28 H 0.96996 * 119.99985 * 359.97438 * 6 4 3 29 29 H 1.09004 * 109.46583 * 299.99869 * 7 6 4 30 30 H 1.08996 * 109.47177 * 59.99726 * 7 6 4 31 31 H 0.97003 * 120.00220 * 359.97438 * 10 8 7 32 32 H 0.96994 * 120.00614 * 179.97438 * 14 13 11 33 33 H 1.07995 * 126.73345 * 0.02810 * 20 19 2 34 34 H 1.08001 * 126.39363 * 180.15477 * 21 20 19 35 35 H 1.07999 * 125.48031 * 179.77948 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1745 0.0000 4 6 3.6006 1.1745 -0.0005 5 8 4.2095 0.1198 -0.0015 6 7 4.2746 2.3417 0.0000 7 6 5.7396 2.3417 -0.0012 8 6 6.2419 3.7625 0.0004 9 8 5.4538 4.6843 0.0017 10 7 7.5670 4.0087 0.0002 11 6 8.0239 5.3013 0.0010 12 1 7.3222 6.1223 0.0014 13 6 9.3901 5.5552 0.0003 14 7 9.8282 6.7941 0.0016 15 14 10.6040 4.1354 -0.0011 16 1 10.9249 3.7598 -1.4016 17 1 11.8477 4.5466 0.6984 18 1 10.0044 2.9709 0.6987 19 6 2.2150 -1.2264 -0.0005 20 6 2.2180 -2.1638 1.0116 21 6 3.0475 -3.2113 0.5831 22 6 3.5138 -2.8769 -0.6406 23 8 3.0121 -1.6840 -0.9887 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 -0.8900 -0.5139 26 1 -0.3633 0.8900 -0.5138 27 1 1.6452 2.1098 -0.0004 28 1 3.7897 3.1818 0.0003 29 1 6.1035 1.8271 0.8882 30 1 6.1022 1.8286 -0.8918 31 1 8.1973 3.2714 -0.0005 32 1 10.7818 6.9714 0.0015 33 1 1.6848 -2.1040 1.9488 34 1 3.2739 -4.1143 1.1305 35 1 4.1831 -3.4750 -1.2413 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854446997.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:33 Heat of formation + Delta-G solvation = -56.722956 kcal Electronic energy + Delta-G solvation = -20667.989856 eV Core-core repulsion = 17246.652817 eV Total energy + Delta-G solvation = -3421.337039 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.29751 -41.13973 -40.10065 -36.57741 -36.17154 -35.25510 -33.85980 -33.69365 -30.66630 -29.50517 -28.47740 -26.19818 -23.74533 -22.45908 -21.94166 -21.50357 -20.72064 -20.07992 -18.94197 -17.75599 -17.27914 -17.07754 -16.78861 -16.62330 -16.52169 -15.66170 -15.53280 -14.95763 -14.70934 -14.38345 -14.29010 -14.02793 -13.92499 -13.69668 -13.62908 -13.42679 -13.25955 -12.98609 -12.73460 -12.47078 -12.02256 -11.60597 -11.15525 -10.72438 -10.68517 -10.44828 -10.35005 -10.07762 -8.99582 -8.47669 -6.09800 -0.23134 0.98025 1.29095 1.31980 1.41941 1.75827 1.79267 2.10538 2.18498 2.20448 2.50222 2.88432 3.08400 3.79682 3.85703 3.99818 4.18793 4.28062 4.31089 4.38238 4.41995 4.50216 4.77968 4.83708 4.97997 5.01486 5.14921 5.26068 5.29708 5.44004 5.47671 5.72613 5.85802 6.30213 6.46018 6.53218 6.75709 7.16879 7.27847 7.75168 8.68823 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028848 B = 0.003544 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.383169 B = 7899.311071 C = 8705.025073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.038 3.962 3 C -0.212 4.212 4 C 0.535 3.465 5 O -0.565 6.565 6 N -0.707 5.707 7 C 0.122 3.878 8 C 0.445 3.555 9 O -0.613 6.613 10 N -0.578 5.578 11 C -0.333 4.333 12 H 0.064 0.936 13 C -0.007 4.007 14 N -0.925 5.925 15 Si 0.959 3.041 16 H -0.256 1.256 17 H -0.272 1.272 18 H -0.235 1.235 19 C 0.005 3.995 20 C -0.203 4.203 21 C -0.226 4.226 22 C -0.044 4.044 23 O -0.168 6.168 24 H 0.104 0.896 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.169 0.831 28 H 0.414 0.586 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.391 0.609 32 H 0.282 0.718 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.679 -20.903 0.429 26.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.035 3.965 3 C -0.232 4.232 4 C 0.327 3.673 5 O -0.448 6.448 6 N -0.361 5.361 7 C -0.006 4.006 8 C 0.232 3.768 9 O -0.499 6.499 10 N -0.218 5.218 11 C -0.462 4.462 12 H 0.082 0.918 13 C -0.207 4.207 14 N -0.565 5.565 15 Si 0.779 3.221 16 H -0.180 1.180 17 H -0.196 1.196 18 H -0.158 1.158 19 C -0.045 4.045 20 C -0.222 4.222 21 C -0.245 4.245 22 C -0.113 4.113 23 O -0.063 6.063 24 H 0.122 0.878 25 H 0.098 0.902 26 H 0.119 0.881 27 H 0.187 0.813 28 H 0.252 0.748 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.227 0.773 32 H 0.091 0.909 33 H 0.179 0.821 34 H 0.184 0.816 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -15.520 -20.672 0.158 25.850 hybrid contribution 1.191 0.273 0.176 1.234 sum -14.329 -20.400 0.333 24.931 Atomic orbital electron populations 1.21066 0.85747 1.05090 1.04958 1.19768 0.97447 0.88011 0.91235 1.22280 0.92466 1.00568 1.07923 1.17601 0.89837 0.82990 0.76907 1.90829 1.71127 1.31253 1.51550 1.45668 1.06076 1.09779 1.74549 1.20798 0.82381 0.92813 1.04658 1.20495 0.82621 0.91293 0.82356 1.90519 1.55652 1.47371 1.56386 1.41935 1.06188 1.07392 1.66248 1.19047 0.92733 0.83536 1.50879 0.91784 1.26057 0.98755 1.00216 0.95656 1.69773 1.16314 1.21195 1.49179 0.85448 0.78186 0.78414 0.80091 1.18044 1.19641 1.15836 1.19859 0.97044 0.96958 0.90673 1.22284 1.05160 0.94315 1.00459 1.21927 1.03149 1.02224 0.97167 1.24677 1.01852 0.85876 0.98867 1.84142 1.48784 1.31689 1.41697 0.87773 0.90154 0.88097 0.81349 0.74808 0.88295 0.88224 0.77282 0.90852 0.82117 0.81589 0.76043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.02 71.24 0.71 -0.51 16 2 C 0.04 0.78 5.78 -19.64 -0.11 0.66 16 3 C -0.21 -4.76 9.49 22.48 0.21 -4.55 16 4 C 0.53 16.33 7.53 85.06 0.64 16.97 16 5 O -0.57 -20.26 12.81 17.76 0.23 -20.04 16 6 N -0.71 -22.46 5.52 -475.93 -2.63 -25.09 16 7 C 0.12 4.15 6.15 85.63 0.53 4.68 16 8 C 0.44 19.80 7.85 87.66 0.69 20.49 16 9 O -0.61 -31.98 15.24 -3.04 -0.05 -32.02 16 10 N -0.58 -27.03 5.09 -306.99 -1.56 -28.59 16 11 C -0.33 -19.09 10.16 84.04 0.85 -18.24 16 12 H 0.06 4.32 7.39 -2.91 -0.02 4.30 16 13 C -0.01 -0.37 5.50 84.93 0.47 0.10 16 14 N -0.92 -54.56 13.96 21.66 0.30 -54.25 16 15 Si 0.96 38.47 27.74 68.60 1.90 40.37 16 16 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 17 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 18 H -0.23 -8.13 6.52 99.48 0.65 -7.48 16 19 C 0.00 0.12 4.38 23.03 0.10 0.22 16 20 C -0.20 -4.66 10.90 22.71 0.25 -4.41 16 21 C -0.23 -4.86 10.87 22.06 0.24 -4.62 16 22 C -0.04 -1.01 12.06 67.11 0.81 -0.20 16 23 O -0.17 -4.85 8.90 16.17 0.14 -4.71 16 24 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.08 0.82 8.10 -2.39 -0.02 0.80 16 26 H 0.10 0.75 8.08 -2.38 -0.02 0.73 16 27 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 28 H 0.41 12.96 7.39 -92.71 -0.69 12.27 16 29 H 0.10 3.14 8.14 -2.38 -0.02 3.12 16 30 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 31 H 0.39 15.47 5.76 -92.71 -0.53 14.93 16 32 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 33 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 34 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 35 H 0.22 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -78.03 312.35 3.59 -74.45 By element: Atomic # 1 Polarization: 39.44 SS G_CDS: -0.14 Total: 39.30 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 5.39 Total: 10.59 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -3.89 Total: -107.94 kcal Atomic # 8 Polarization: -57.09 SS G_CDS: 0.33 Total: -56.77 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 1.90 Total: 40.37 kcal Total: -78.03 3.59 -74.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854446997.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.722 kcal (2) G-P(sol) polarization free energy of solvation -78.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds