Wall clock time and date at job start Tue Mar 31 2020 00:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35627 * 119.99691 * 2 1 4 4 C 1.41548 * 120.00471 * 7.24532 * 3 2 1 5 5 O 1.21780 * 119.99478 * 6.05128 * 4 3 2 6 6 N 1.34774 * 120.00284 * 186.05277 * 4 3 2 7 7 C 1.46498 * 120.00011 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.47137 * 180.02562 * 7 6 4 9 9 O 1.21289 * 120.00015 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99959 * 179.97438 * 8 7 6 11 11 C 1.37098 * 119.99651 * 179.97438 * 10 8 7 12 12 H 1.07995 * 120.00586 * 0.02562 * 11 10 8 13 13 C 1.38956 * 119.99701 * 180.02562 * 11 10 8 14 14 N 1.31408 * 119.99775 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99775 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.46790 * 90.00451 * 15 13 11 17 17 H 1.48497 * 109.47098 * 210.00056 * 15 13 11 18 18 H 1.48497 * 109.47389 * 330.00164 * 15 13 11 19 19 C 1.41600 * 120.00220 * 180.02562 * 2 1 3 20 20 C 1.37956 * 126.10234 * 294.98324 * 19 2 1 21 21 C 1.40314 * 106.52683 * 180.02562 * 20 19 2 22 22 C 1.35155 * 107.20935 * 359.97438 * 21 20 19 23 23 O 1.34023 * 109.03200 * 0.02562 * 22 21 20 24 24 H 1.08995 * 109.46736 * 275.52525 * 1 2 3 25 25 H 1.08997 * 109.47175 * 35.52572 * 1 2 3 26 26 H 1.09005 * 109.47034 * 155.52695 * 1 2 3 27 27 H 1.08007 * 119.99497 * 187.24557 * 3 2 1 28 28 H 0.97001 * 119.99983 * 0.02562 * 6 4 3 29 29 H 1.09005 * 109.47153 * 300.00459 * 7 6 4 30 30 H 1.09001 * 109.46968 * 60.00476 * 7 6 4 31 31 H 0.96994 * 119.99989 * 0.02562 * 10 8 7 32 32 H 0.97008 * 119.99882 * 179.97438 * 14 13 11 33 33 H 1.07993 * 126.73563 * 0.02562 * 20 19 2 34 34 H 1.08002 * 126.39672 * 180.02562 * 21 20 19 35 35 H 1.07998 * 125.47952 * 180.26237 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 1.4859 2.3956 0.1546 5 8 0.2926 2.3872 0.3975 6 7 2.1407 3.5673 0.0329 7 6 1.4168 4.8309 0.1924 8 6 2.3709 5.9829 0.0090 9 8 3.5403 5.7694 -0.2317 10 7 1.9244 7.2505 0.1115 11 6 2.7925 8.2985 -0.0548 12 1 3.8340 8.1085 -0.2683 13 6 2.3323 9.6054 0.0513 14 7 3.1643 10.6099 -0.1086 15 14 0.5308 9.9341 0.4199 16 1 0.3318 10.0078 1.8897 17 1 0.1257 11.2214 -0.1996 18 1 -0.2972 8.8345 -0.1372 19 6 2.2151 -1.2263 -0.0005 20 6 2.2138 -2.1661 1.0094 21 6 3.0473 -3.2112 0.5830 22 6 3.5132 -2.8773 -0.6410 23 8 3.0116 -1.6841 -0.9889 24 1 -0.3632 0.0989 1.0229 25 1 -0.3633 0.8363 -0.5971 26 1 -0.3633 -0.9354 -0.4257 27 1 3.2587 1.1783 -0.1180 28 1 3.0911 3.5739 -0.1610 29 1 0.6251 4.8928 -0.5543 30 1 0.9798 4.8759 1.1899 31 1 0.9891 7.4212 0.3036 32 1 2.8430 11.5222 -0.0348 33 1 1.6768 -2.1086 1.9445 34 1 3.2737 -4.1143 1.1303 35 1 4.1791 -3.4773 -1.2434 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854446998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:36 Heat of formation + Delta-G solvation = -32.014554 kcal Electronic energy + Delta-G solvation = -20141.188694 eV Core-core repulsion = 16720.923092 eV Total energy + Delta-G solvation = -3420.265602 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.78444 -40.03292 -38.43945 -35.53140 -34.45604 -33.76143 -33.21292 -31.81887 -29.67266 -28.66571 -27.06930 -24.52222 -23.24759 -21.94514 -20.70349 -19.82202 -19.39674 -18.54843 -17.36802 -17.13977 -16.30978 -15.78089 -15.55099 -15.44376 -14.79742 -14.73271 -14.15654 -13.95027 -13.49130 -13.22160 -13.11560 -13.04911 -12.72558 -12.63533 -12.49692 -12.17989 -12.07996 -11.84693 -11.24505 -10.65374 -10.25793 -10.07377 -9.71104 -9.68169 -9.66764 -8.87479 -8.78891 -8.50684 -8.31620 -6.41750 -3.94394 0.63299 1.44372 2.28585 2.77576 2.98644 3.03296 3.11476 3.32629 3.43831 3.55881 4.02616 4.46488 4.55467 4.65055 4.77655 4.80733 5.13003 5.17043 5.28606 5.47741 5.52557 5.64774 5.67163 5.72401 5.76178 5.80245 5.87387 6.04413 6.17064 6.31692 6.57143 6.76187 7.42987 7.71681 7.99194 8.31867 8.44825 8.80677 9.28680 9.62235 10.70408 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043669 B = 0.002839 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.039636 B = 9861.854676 C =10350.504187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.030 3.970 3 C -0.186 4.186 4 C 0.544 3.456 5 O -0.546 6.546 6 N -0.702 5.702 7 C 0.106 3.894 8 C 0.437 3.563 9 O -0.579 6.579 10 N -0.576 5.576 11 C -0.310 4.310 12 H 0.122 0.878 13 C 0.045 3.955 14 N -0.874 5.874 15 Si 0.880 3.120 16 H -0.269 1.269 17 H -0.275 1.275 18 H -0.267 1.267 19 C 0.005 3.995 20 C -0.179 4.179 21 C -0.213 4.213 22 C -0.037 4.037 23 O -0.162 6.162 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.056 0.944 27 H 0.132 0.868 28 H 0.413 0.587 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.374 0.626 32 H 0.276 0.724 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.722 -24.113 1.023 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.028 3.972 3 C -0.207 4.207 4 C 0.334 3.666 5 O -0.428 6.428 6 N -0.356 5.356 7 C -0.022 4.022 8 C 0.223 3.777 9 O -0.463 6.463 10 N -0.214 5.214 11 C -0.439 4.439 12 H 0.139 0.861 13 C -0.159 4.159 14 N -0.513 5.513 15 Si 0.706 3.294 16 H -0.194 1.194 17 H -0.200 1.200 18 H -0.192 1.192 19 C -0.045 4.045 20 C -0.198 4.198 21 C -0.232 4.232 22 C -0.106 4.106 23 O -0.057 6.057 24 H 0.104 0.896 25 H 0.118 0.882 26 H 0.075 0.925 27 H 0.150 0.850 28 H 0.251 0.749 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.208 0.792 32 H 0.086 0.914 33 H 0.171 0.829 34 H 0.169 0.831 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -4.659 -23.790 0.752 24.253 hybrid contribution -0.669 0.344 0.343 0.826 sum -5.328 -23.446 1.094 24.068 Atomic orbital electron populations 1.21139 0.88450 1.02894 1.04153 1.19192 0.96041 0.88228 0.93785 1.22087 1.01176 0.92171 1.05241 1.16880 0.87136 0.84181 0.78370 1.90800 1.14874 1.88022 1.49101 1.45662 1.14144 1.04630 1.71149 1.20975 0.94764 0.83400 1.03012 1.19656 0.89084 0.83743 0.85199 1.90542 1.17813 1.83952 1.54008 1.42125 1.10582 1.05513 1.63169 1.19444 0.94649 0.83289 1.46513 0.86087 1.25073 0.98463 0.95208 0.97189 1.69620 1.34896 0.99199 1.47583 0.86663 0.84310 0.79029 0.79445 1.19388 1.19976 1.19213 1.19805 0.98278 0.96886 0.89493 1.22168 1.03521 0.93695 1.00457 1.21736 1.02697 1.01657 0.97133 1.24240 1.02210 0.86172 0.97973 1.84200 1.49311 1.31327 1.40843 0.89628 0.88160 0.92499 0.85040 0.74874 0.89617 0.89586 0.79233 0.91373 0.82921 0.83098 0.77888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 8.43 36.01 0.30 -0.91 16 2 C 0.03 0.35 5.77 -104.27 -0.60 -0.25 16 3 C -0.19 -2.33 9.46 -39.25 -0.37 -2.70 16 4 C 0.54 8.12 7.43 -15.00 -0.11 8.01 16 5 O -0.55 -9.04 13.16 5.12 0.07 -8.97 16 6 N -0.70 -11.16 5.52 -64.43 -0.36 -11.51 16 7 C 0.11 1.82 6.15 -5.20 -0.03 1.79 16 8 C 0.44 9.58 7.85 -10.98 -0.09 9.49 16 9 O -0.58 -14.64 15.24 5.55 0.08 -14.56 16 10 N -0.58 -13.36 5.09 -10.96 -0.06 -13.42 16 11 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 12 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 13 C 0.04 1.20 5.50 -17.47 -0.10 1.11 16 14 N -0.87 -24.95 13.96 55.50 0.77 -24.17 16 15 Si 0.88 18.93 27.74 -169.99 -4.71 14.22 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 19 C 0.01 0.06 6.34 -38.40 -0.24 -0.19 16 20 C -0.18 -1.72 10.90 -38.90 -0.42 -2.14 16 21 C -0.21 -1.72 10.87 -39.90 -0.43 -2.15 16 22 C -0.04 -0.30 12.06 29.64 0.36 0.06 16 23 O -0.16 -1.77 10.67 4.67 0.05 -1.72 16 24 H 0.09 0.93 8.03 -51.93 -0.42 0.51 16 25 H 0.10 1.26 6.16 -51.93 -0.32 0.94 16 26 H 0.06 0.53 8.06 -51.93 -0.42 0.11 16 27 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 28 H 0.41 6.55 7.39 -40.82 -0.30 6.25 16 29 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 32 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.20 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 312.66 15.07 4.71 4.71 Total: -1.00 -32.51 312.66 -5.11 -37.63 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -3.79 Total: 14.38 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -1.89 Total: 3.41 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.36 Total: -49.10 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: 0.20 Total: -25.24 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.71 Total: 14.22 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.51 -5.11 -37.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854446998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.611 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds