Wall clock time and date at job start Tue Mar 31 2020 00:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35627 * 119.99691 * 2 1 4 4 C 1.41548 * 120.00471 * 7.24532 * 3 2 1 5 5 O 1.21780 * 119.99478 * 6.05128 * 4 3 2 6 6 N 1.34774 * 120.00284 * 186.05277 * 4 3 2 7 7 C 1.46498 * 120.00011 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.47137 * 180.02562 * 7 6 4 9 9 O 1.21289 * 120.00015 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99959 * 179.97438 * 8 7 6 11 11 C 1.37098 * 119.99651 * 179.97438 * 10 8 7 12 12 H 1.07995 * 120.00586 * 0.02562 * 11 10 8 13 13 C 1.38956 * 119.99701 * 180.02562 * 11 10 8 14 14 N 1.31408 * 119.99775 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99775 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.46790 * 90.00451 * 15 13 11 17 17 H 1.48497 * 109.47098 * 210.00056 * 15 13 11 18 18 H 1.48497 * 109.47389 * 330.00164 * 15 13 11 19 19 C 1.41600 * 120.00220 * 180.02562 * 2 1 3 20 20 C 1.37956 * 126.10234 * 294.98324 * 19 2 1 21 21 C 1.40314 * 106.52683 * 180.02562 * 20 19 2 22 22 C 1.35155 * 107.20935 * 359.97438 * 21 20 19 23 23 O 1.34023 * 109.03200 * 0.02562 * 22 21 20 24 24 H 1.08995 * 109.46736 * 275.52525 * 1 2 3 25 25 H 1.08997 * 109.47175 * 35.52572 * 1 2 3 26 26 H 1.09005 * 109.47034 * 155.52695 * 1 2 3 27 27 H 1.08007 * 119.99497 * 187.24557 * 3 2 1 28 28 H 0.97001 * 119.99983 * 0.02562 * 6 4 3 29 29 H 1.09005 * 109.47153 * 300.00459 * 7 6 4 30 30 H 1.09001 * 109.46968 * 60.00476 * 7 6 4 31 31 H 0.96994 * 119.99989 * 0.02562 * 10 8 7 32 32 H 0.97008 * 119.99882 * 179.97438 * 14 13 11 33 33 H 1.07993 * 126.73563 * 0.02562 * 20 19 2 34 34 H 1.08002 * 126.39672 * 180.02562 * 21 20 19 35 35 H 1.07998 * 125.47952 * 180.26237 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 1.4859 2.3956 0.1546 5 8 0.2926 2.3872 0.3975 6 7 2.1407 3.5673 0.0329 7 6 1.4168 4.8309 0.1924 8 6 2.3709 5.9829 0.0090 9 8 3.5403 5.7694 -0.2317 10 7 1.9244 7.2505 0.1115 11 6 2.7925 8.2985 -0.0548 12 1 3.8340 8.1085 -0.2683 13 6 2.3323 9.6054 0.0513 14 7 3.1643 10.6099 -0.1086 15 14 0.5308 9.9341 0.4199 16 1 0.3318 10.0078 1.8897 17 1 0.1257 11.2214 -0.1996 18 1 -0.2972 8.8345 -0.1372 19 6 2.2151 -1.2263 -0.0005 20 6 2.2138 -2.1661 1.0094 21 6 3.0473 -3.2112 0.5830 22 6 3.5132 -2.8773 -0.6410 23 8 3.0116 -1.6841 -0.9889 24 1 -0.3632 0.0989 1.0229 25 1 -0.3633 0.8363 -0.5971 26 1 -0.3633 -0.9354 -0.4257 27 1 3.2587 1.1783 -0.1180 28 1 3.0911 3.5739 -0.1610 29 1 0.6251 4.8928 -0.5543 30 1 0.9798 4.8759 1.1899 31 1 0.9891 7.4212 0.3036 32 1 2.8430 11.5222 -0.0348 33 1 1.6768 -2.1086 1.9445 34 1 3.2737 -4.1143 1.1303 35 1 4.1791 -3.4773 -1.2434 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854446998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:35 Heat of formation + Delta-G solvation = -56.151485 kcal Electronic energy + Delta-G solvation = -20142.235350 eV Core-core repulsion = 16720.923092 eV Total energy + Delta-G solvation = -3421.312258 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.48611 -41.28434 -40.17250 -36.62467 -36.12172 -35.23791 -33.90210 -33.84198 -30.75417 -29.57643 -28.37185 -26.23137 -24.23683 -22.60999 -21.73961 -21.48957 -20.74933 -20.15395 -18.38854 -18.24408 -17.32706 -17.06948 -16.90789 -16.80758 -16.38203 -15.85758 -15.50877 -15.33584 -14.84532 -14.44015 -14.22032 -14.02332 -13.98168 -13.86825 -13.54686 -13.47907 -13.29708 -12.96235 -12.76824 -12.45207 -12.00378 -11.58652 -10.94737 -10.82470 -10.66906 -10.61326 -10.33718 -10.05372 -9.26581 -8.46110 -6.08357 -0.28527 0.69943 1.31059 1.34017 1.44125 1.64411 1.78410 1.97205 2.15157 2.20660 2.36183 2.89986 3.10137 3.72044 3.85254 3.98203 4.05317 4.17715 4.21977 4.41036 4.43391 4.47458 4.73030 4.81497 4.92369 4.96267 5.08246 5.17785 5.26673 5.44336 5.48809 5.56723 5.87506 6.08064 6.47175 6.50254 6.77687 7.12110 7.29018 7.77911 8.70416 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043669 B = 0.002839 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.039636 B = 9861.854676 C =10350.504187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.050 3.950 3 C -0.208 4.208 4 C 0.549 3.451 5 O -0.563 6.563 6 N -0.709 5.709 7 C 0.119 3.881 8 C 0.443 3.557 9 O -0.616 6.616 10 N -0.578 5.578 11 C -0.332 4.332 12 H 0.062 0.938 13 C -0.009 4.009 14 N -0.926 5.926 15 Si 0.960 3.040 16 H -0.256 1.256 17 H -0.273 1.273 18 H -0.232 1.232 19 C -0.032 4.032 20 C -0.175 4.175 21 C -0.223 4.223 22 C -0.031 4.031 23 O -0.181 6.181 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.140 0.860 28 H 0.412 0.588 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.393 0.607 32 H 0.281 0.719 33 H 0.165 0.835 34 H 0.177 0.823 35 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.964 -26.441 1.604 27.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.048 3.952 3 C -0.228 4.228 4 C 0.341 3.659 5 O -0.446 6.446 6 N -0.363 5.363 7 C -0.009 4.009 8 C 0.231 3.769 9 O -0.503 6.503 10 N -0.218 5.218 11 C -0.462 4.462 12 H 0.080 0.920 13 C -0.209 4.209 14 N -0.566 5.566 15 Si 0.780 3.220 16 H -0.180 1.180 17 H -0.198 1.198 18 H -0.155 1.155 19 C -0.081 4.081 20 C -0.194 4.194 21 C -0.241 4.241 22 C -0.099 4.099 23 O -0.077 6.077 24 H 0.107 0.893 25 H 0.103 0.897 26 H 0.092 0.908 27 H 0.158 0.842 28 H 0.250 0.750 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.229 0.771 32 H 0.091 0.909 33 H 0.182 0.818 34 H 0.194 0.806 35 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -6.911 -26.150 1.335 27.081 hybrid contribution 0.170 0.860 0.142 0.888 sum -6.740 -25.291 1.477 26.215 Atomic orbital electron populations 1.21116 0.88134 1.03105 1.04068 1.19337 0.96367 0.88404 0.91124 1.22000 1.01589 0.91499 1.07748 1.17110 0.86897 0.84308 0.77548 1.90790 1.15546 1.88204 1.50087 1.45708 1.14105 1.04575 1.71876 1.20890 0.93530 0.81596 1.04836 1.20577 0.89269 0.84497 0.82549 1.90530 1.20095 1.84755 1.54873 1.41927 1.10883 1.04960 1.63996 1.19029 0.93205 0.85397 1.48519 0.91988 1.26097 1.04674 0.94085 0.96045 1.69786 1.38033 0.99995 1.48784 0.85422 0.76820 0.79807 0.79926 1.18036 1.19836 1.15481 1.19792 1.00132 0.97457 0.90685 1.22497 1.03093 0.93472 1.00384 1.22110 1.02363 1.02218 0.97426 1.25089 1.01306 0.85124 0.98352 1.84186 1.49652 1.32630 1.41219 0.89349 0.89685 0.90817 0.84223 0.75027 0.87588 0.87473 0.77147 0.90903 0.81758 0.80566 0.74305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 8.43 71.24 0.60 -1.65 16 2 C 0.05 1.13 5.77 -19.64 -0.11 1.01 16 3 C -0.21 -5.09 9.46 22.48 0.21 -4.88 16 4 C 0.55 15.90 7.43 85.06 0.63 16.53 16 5 O -0.56 -17.88 13.16 -4.60 -0.06 -17.94 16 6 N -0.71 -22.00 5.52 -475.94 -2.63 -24.62 16 7 C 0.12 3.86 6.15 85.63 0.53 4.39 16 8 C 0.44 19.41 7.85 87.66 0.69 20.10 16 9 O -0.62 -32.16 15.24 -3.06 -0.05 -32.21 16 10 N -0.58 -26.60 5.09 -306.98 -1.56 -28.16 16 11 C -0.33 -18.97 10.16 84.04 0.85 -18.11 16 12 H 0.06 4.19 7.39 -2.91 -0.02 4.16 16 13 C -0.01 -0.49 5.50 84.93 0.47 -0.03 16 14 N -0.93 -54.60 13.96 21.66 0.30 -54.30 16 15 Si 0.96 38.02 27.74 68.60 1.90 39.92 16 16 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 17 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 18 H -0.23 -7.78 6.52 99.48 0.65 -7.13 16 19 C -0.03 -0.66 6.34 23.03 0.15 -0.51 16 20 C -0.18 -2.99 10.90 22.71 0.25 -2.75 16 21 C -0.22 -2.95 10.87 22.06 0.24 -2.71 16 22 C -0.03 -0.41 12.06 67.11 0.81 0.40 16 23 O -0.18 -3.67 10.67 -6.20 -0.07 -3.74 16 24 H 0.09 1.79 8.03 -2.39 -0.02 1.78 16 25 H 0.08 2.07 6.16 -2.39 -0.01 2.06 16 26 H 0.07 1.25 8.06 -2.38 -0.02 1.23 16 27 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 28 H 0.41 13.13 7.39 -92.71 -0.69 12.44 16 29 H 0.11 3.08 8.14 -2.38 -0.02 3.06 16 30 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.39 15.06 5.76 -92.71 -0.53 14.52 16 32 H 0.28 15.13 8.31 -92.70 -0.77 14.36 16 33 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 34 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.24 1.03 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -74.01 312.66 3.02 -70.99 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: -0.13 Total: 38.24 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 5.31 Total: 11.82 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -3.89 Total: -107.09 kcal Atomic # 8 Polarization: -53.71 SS G_CDS: -0.17 Total: -53.88 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 1.90 Total: 39.92 kcal Total: -74.01 3.02 -70.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854446998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.841 kcal (2) G-P(sol) polarization free energy of solvation -74.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds