Wall clock time and date at job start Tue Mar 31 2020 01:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46926 * 2 1 4 4 C 1.50698 * 109.47208 * 240.00203 * 2 1 3 5 5 H 1.08001 * 119.99327 * 240.00201 * 4 2 1 6 6 C 1.37870 * 120.00375 * 59.99675 * 4 2 1 7 7 N 1.31521 * 120.00057 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00259 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.46661 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47341 * 119.99899 * 8 6 4 11 11 H 1.48501 * 109.46887 * 240.00441 * 8 6 4 12 12 C 1.50698 * 109.47062 * 119.99809 * 2 1 3 13 13 O 1.20823 * 120.00264 * 120.00570 * 12 2 1 14 14 O 1.34232 * 119.99648 * 299.99897 * 12 2 1 15 15 C 1.45200 * 116.99616 * 180.02562 * 14 12 2 16 16 C 1.50699 * 109.47147 * 180.02562 * 15 14 12 17 17 O 1.21273 * 120.00173 * 359.97438 * 16 15 14 18 18 N 1.34781 * 119.99935 * 179.97438 * 16 15 14 19 19 C 1.39411 * 119.99499 * 185.08569 * 18 16 15 20 20 C 1.39040 * 119.69155 * 174.92142 * 19 18 16 21 21 C 1.38357 * 119.10269 * 179.97438 * 20 19 18 22 22 C 1.38844 * 118.49358 * 359.97438 * 21 20 19 23 23 C 1.38070 * 119.30794 * 0.25385 * 22 21 20 24 24 N 1.31934 * 120.84988 * 359.49460 * 23 22 21 25 25 H 1.09003 * 109.47332 * 60.00057 * 1 2 3 26 26 H 1.09002 * 109.46926 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47197 * 300.00066 * 1 2 3 28 28 H 0.96998 * 119.99908 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47706 * 60.00260 * 15 14 12 30 30 H 1.09007 * 109.46912 * 300.00102 * 15 14 12 31 31 H 0.96996 * 120.00234 * 5.09350 * 18 16 15 32 32 H 1.07999 * 120.44927 * 0.02562 * 20 19 18 33 33 H 1.07995 * 120.75448 * 180.02562 * 21 20 19 34 34 H 1.07997 * 120.34426 * 179.97438 * 22 21 20 35 35 H 1.08000 * 119.57757 * 179.74892 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1466 -2.2870 -3.6036 10 1 1.1662 -1.5867 -4.8160 11 1 3.1467 -0.1873 -4.8164 12 6 2.0323 -0.7104 1.2305 13 8 2.7271 -1.6927 1.1197 14 8 1.7080 -0.2516 2.4496 15 6 2.2276 -0.9855 3.5897 16 6 1.7626 -0.3290 4.8639 17 8 1.0626 0.6602 4.8160 18 7 2.1246 -0.8412 6.0569 19 6 1.6095 -0.2991 7.2334 20 6 1.9026 -0.8977 8.4537 21 6 1.3854 -0.3492 9.6138 22 6 0.5897 0.7842 9.5131 23 6 0.3358 1.3233 8.2676 24 7 0.8468 0.7811 7.1788 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.7095 1.1617 -3.4844 29 1 3.3171 -0.9844 3.5567 30 1 1.8642 -2.0127 3.5569 31 1 2.7437 -1.5869 6.0968 32 1 2.5264 -1.7783 8.4955 33 1 1.5963 -0.7920 10.5759 34 1 0.1702 1.2368 10.3994 35 1 -0.2859 2.2024 8.1839 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869550624.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:18 Heat of formation + Delta-G solvation = -69.938109 kcal Electronic energy + Delta-G solvation = -20490.135883 eV Core-core repulsion = 17068.225792 eV Total energy + Delta-G solvation = -3421.910091 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.96312 -39.79833 -38.81863 -35.75639 -35.01668 -33.89107 -32.64868 -30.92479 -30.47897 -28.24751 -25.18997 -24.19809 -23.60312 -22.76720 -20.68142 -19.87297 -18.49517 -17.28059 -16.77181 -16.42152 -16.33289 -16.00456 -15.72444 -15.30033 -15.07086 -14.67702 -14.27702 -13.90616 -13.53746 -13.29285 -12.85377 -12.60783 -12.29991 -12.09730 -11.53629 -11.05816 -11.00150 -10.78165 -10.68923 -10.35651 -10.24863 -10.22231 -10.11020 -10.06274 -9.27685 -9.13326 -9.01935 -8.54159 -8.45044 -6.09713 -4.15816 0.83988 1.07107 2.33604 2.54912 3.21977 3.29509 3.36528 3.42269 3.57454 3.69007 4.17966 4.42221 4.52099 4.61141 4.77344 4.85321 4.97553 5.18063 5.18984 5.23687 5.40740 5.64776 5.87980 5.97393 6.01925 6.51761 6.70330 6.86319 6.90033 6.93065 7.12422 7.45108 7.75746 7.80816 7.95061 8.11808 8.14312 8.76245 8.92776 9.49684 10.97664 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.053523 B = 0.002998 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.010927 B = 9337.932585 C = 9768.873322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.059 3.941 3 H 0.067 0.933 4 C -0.513 4.513 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.905 3.095 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.468 3.532 13 O -0.517 6.517 14 O -0.341 6.341 15 C 0.047 3.953 16 C 0.503 3.497 17 O -0.441 6.441 18 N -0.663 5.663 19 C 0.366 3.634 20 C -0.210 4.210 21 C -0.049 4.049 22 C -0.210 4.210 23 C 0.135 3.865 24 N -0.478 5.478 25 H 0.097 0.903 26 H 0.031 0.969 27 H 0.027 0.973 28 H 0.263 0.737 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.418 0.582 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.304 -3.087 23.643 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.041 3.959 3 H 0.085 0.915 4 C -0.551 4.551 5 H 0.095 0.905 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.732 3.268 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.313 3.687 13 O -0.404 6.404 14 O -0.258 6.258 15 C -0.032 4.032 16 C 0.288 3.712 17 O -0.306 6.306 18 N -0.313 5.313 19 C 0.135 3.865 20 C -0.234 4.234 21 C -0.075 4.075 22 C -0.232 4.232 23 C -0.023 4.023 24 N -0.192 5.192 25 H 0.115 0.885 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.255 0.745 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.746 -2.183 22.474 22.592 hybrid contribution 0.945 -1.389 0.173 1.689 sum 1.690 -3.572 22.647 22.989 Atomic orbital electron populations 1.21748 0.95398 1.00088 1.02041 1.18804 0.95042 0.97093 0.85004 0.91539 1.21161 1.31991 1.13269 0.88690 0.90550 1.24949 0.94905 0.95029 0.99154 1.69900 1.36433 1.22750 1.23801 0.86315 0.78631 0.79671 0.82142 1.19525 1.20880 1.20892 1.25581 0.76411 0.83217 0.83507 1.90498 1.36540 1.26772 1.86563 1.86746 1.69919 1.54761 1.14392 1.22399 1.00444 0.96320 0.84004 1.20580 0.81473 0.85112 0.84070 1.90860 1.31942 1.21935 1.85848 1.43545 1.47497 1.36379 1.03831 1.18486 0.92055 0.90550 0.85385 1.21461 1.06609 1.03630 0.91682 1.21345 0.93775 0.94265 0.98083 1.22070 1.02804 0.98860 0.99435 1.22737 0.94841 0.97839 0.86927 1.67706 1.10146 1.09059 1.32309 0.88496 0.94997 0.95420 0.92694 0.88534 0.88495 0.74477 0.84608 0.84564 0.84763 0.82353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 8.90 37.16 0.33 -2.98 16 2 C 0.06 1.54 2.74 -92.92 -0.25 1.29 16 3 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 4 C -0.51 -14.44 8.37 -34.44 -0.29 -14.73 16 5 H 0.08 2.22 6.76 -52.49 -0.35 1.87 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.08 11.32 55.43 0.63 -24.45 16 8 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.47 11.05 7.25 36.00 0.26 11.31 16 13 O -0.52 -12.74 15.21 -18.75 -0.29 -13.03 16 14 O -0.34 -7.12 9.66 -45.91 -0.44 -7.57 16 15 C 0.05 0.71 5.95 36.00 0.21 0.93 16 16 C 0.50 7.67 7.87 -10.98 -0.09 7.58 16 17 O -0.44 -8.77 14.77 -14.10 -0.21 -8.98 16 18 N -0.66 -7.27 5.39 -11.43 -0.06 -7.34 16 19 C 0.37 4.35 7.42 -154.70 -1.15 3.20 16 20 C -0.21 -1.72 9.94 -39.24 -0.39 -2.11 16 21 C -0.05 -0.34 10.17 -39.31 -0.40 -0.74 16 22 C -0.21 -1.63 10.11 -39.42 -0.40 -2.02 16 23 C 0.13 1.43 11.17 -17.57 -0.20 1.23 16 24 N -0.48 -6.84 7.89 -12.37 -0.10 -6.94 16 25 H 0.10 2.54 6.07 -51.93 -0.32 2.23 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.03 0.62 8.11 -51.93 -0.42 0.19 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 30 H 0.10 1.30 8.13 -51.92 -0.42 0.88 16 31 H 0.42 2.70 8.70 -40.82 -0.36 2.34 16 32 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 34 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 313.02 15.07 4.72 4.72 Total: -1.00 -35.58 313.02 -7.19 -42.76 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -3.96 Total: -0.18 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -2.45 Total: 4.55 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.47 Total: -38.72 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.94 Total: -29.58 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.58 -7.19 -42.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869550624.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.175 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds