Wall clock time and date at job start Tue Mar 31 2020 01:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46926 * 2 1 4 4 C 1.50698 * 109.47208 * 240.00203 * 2 1 3 5 5 H 1.08001 * 119.99327 * 240.00201 * 4 2 1 6 6 C 1.37870 * 120.00375 * 59.99675 * 4 2 1 7 7 N 1.31521 * 120.00057 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00259 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.46661 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47341 * 119.99899 * 8 6 4 11 11 H 1.48501 * 109.46887 * 240.00441 * 8 6 4 12 12 C 1.50698 * 109.47062 * 119.99809 * 2 1 3 13 13 O 1.20823 * 120.00264 * 120.00570 * 12 2 1 14 14 O 1.34232 * 119.99648 * 299.99897 * 12 2 1 15 15 C 1.45200 * 116.99616 * 180.02562 * 14 12 2 16 16 C 1.50699 * 109.47147 * 180.02562 * 15 14 12 17 17 O 1.21273 * 120.00173 * 359.97438 * 16 15 14 18 18 N 1.34781 * 119.99935 * 179.97438 * 16 15 14 19 19 C 1.39411 * 119.99499 * 185.08569 * 18 16 15 20 20 C 1.39040 * 119.69155 * 174.92142 * 19 18 16 21 21 C 1.38357 * 119.10269 * 179.97438 * 20 19 18 22 22 C 1.38844 * 118.49358 * 359.97438 * 21 20 19 23 23 C 1.38070 * 119.30794 * 0.25385 * 22 21 20 24 24 N 1.31934 * 120.84988 * 359.49460 * 23 22 21 25 25 H 1.09003 * 109.47332 * 60.00057 * 1 2 3 26 26 H 1.09002 * 109.46926 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47197 * 300.00066 * 1 2 3 28 28 H 0.96998 * 119.99908 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47706 * 60.00260 * 15 14 12 30 30 H 1.09007 * 109.46912 * 300.00102 * 15 14 12 31 31 H 0.96996 * 120.00234 * 5.09350 * 18 16 15 32 32 H 1.07999 * 120.44927 * 0.02562 * 20 19 18 33 33 H 1.07995 * 120.75448 * 180.02562 * 21 20 19 34 34 H 1.07997 * 120.34426 * 179.97438 * 22 21 20 35 35 H 1.08000 * 119.57757 * 179.74892 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1466 -2.2870 -3.6036 10 1 1.1662 -1.5867 -4.8160 11 1 3.1467 -0.1873 -4.8164 12 6 2.0323 -0.7104 1.2305 13 8 2.7271 -1.6927 1.1197 14 8 1.7080 -0.2516 2.4496 15 6 2.2276 -0.9855 3.5897 16 6 1.7626 -0.3290 4.8639 17 8 1.0626 0.6602 4.8160 18 7 2.1246 -0.8412 6.0569 19 6 1.6095 -0.2991 7.2334 20 6 1.9026 -0.8977 8.4537 21 6 1.3854 -0.3492 9.6138 22 6 0.5897 0.7842 9.5131 23 6 0.3358 1.3233 8.2676 24 7 0.8468 0.7811 7.1788 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.7095 1.1617 -3.4844 29 1 3.3171 -0.9844 3.5567 30 1 1.8642 -2.0127 3.5569 31 1 2.7437 -1.5869 6.0968 32 1 2.5264 -1.7783 8.4955 33 1 1.5963 -0.7920 10.5759 34 1 0.1702 1.2368 10.3994 35 1 -0.2859 2.2024 8.1839 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869550624.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:17 Heat of formation + Delta-G solvation = -92.846094 kcal Electronic energy + Delta-G solvation = -20491.129248 eV Core-core repulsion = 17068.225792 eV Total energy + Delta-G solvation = -3422.903456 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.94606 -41.34019 -39.96719 -37.44287 -36.06170 -35.93929 -33.34754 -32.76351 -31.59622 -29.42374 -27.29800 -25.29825 -24.72610 -23.99646 -21.78995 -21.60593 -19.41383 -18.66636 -18.47934 -17.81673 -17.71325 -17.35135 -16.95660 -16.44990 -16.33784 -16.12463 -15.40367 -15.06174 -14.89718 -14.67595 -14.18834 -13.89223 -13.74771 -13.44533 -12.99016 -12.86672 -12.76746 -12.62290 -12.31813 -12.05698 -11.93270 -11.80909 -11.39541 -11.12009 -11.10600 -10.80282 -10.54961 -10.06634 -9.32004 -8.20033 -6.34411 0.10326 0.42003 1.19008 1.34647 1.43115 1.44382 1.46836 1.58154 2.21178 2.46097 2.95644 3.10125 3.24071 3.74350 3.96797 4.00569 4.01982 4.17269 4.20973 4.26733 4.39723 4.66076 4.80403 4.87629 4.95996 5.04747 5.21915 5.29187 5.31667 5.39848 5.66609 5.83053 5.85800 6.06100 6.08896 6.72705 6.85174 6.96327 7.28583 7.34796 8.87059 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.053523 B = 0.002998 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.010927 B = 9337.932585 C = 9768.873322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 H 0.048 0.952 4 C -0.536 4.536 5 H 0.063 0.937 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.969 3.031 9 H -0.272 1.272 10 H -0.274 1.274 11 H -0.275 1.275 12 C 0.479 3.521 13 O -0.531 6.531 14 O -0.353 6.353 15 C 0.041 3.959 16 C 0.509 3.491 17 O -0.500 6.500 18 N -0.644 5.644 19 C 0.328 3.672 20 C -0.195 4.195 21 C -0.048 4.048 22 C -0.195 4.195 23 C 0.103 3.897 24 N -0.533 5.533 25 H 0.078 0.922 26 H 0.033 0.967 27 H 0.040 0.960 28 H 0.268 0.732 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.439 0.561 32 H 0.172 0.828 33 H 0.177 0.823 34 H 0.166 0.834 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.100 -4.702 25.747 26.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.031 3.969 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.081 0.919 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.793 3.207 9 H -0.196 1.196 10 H -0.199 1.199 11 H -0.200 1.200 12 C 0.324 3.676 13 O -0.419 6.419 14 O -0.269 6.269 15 C -0.036 4.036 16 C 0.294 3.706 17 O -0.370 6.370 18 N -0.295 5.295 19 C 0.098 3.902 20 C -0.217 4.217 21 C -0.074 4.074 22 C -0.216 4.216 23 C -0.053 4.053 24 N -0.248 5.248 25 H 0.097 0.903 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.280 0.720 32 H 0.189 0.811 33 H 0.195 0.805 34 H 0.183 0.817 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.556 -3.819 24.647 24.990 hybrid contribution 0.693 -0.869 -0.248 1.139 sum 2.250 -4.688 24.399 24.947 Atomic orbital electron populations 1.21572 0.94647 1.00036 1.01712 1.18702 0.95771 0.96244 0.86231 0.93405 1.21283 1.32623 1.13333 0.90112 0.91921 1.25725 0.94868 0.95658 1.01846 1.69995 1.36764 1.23553 1.24747 0.85337 0.78308 0.78510 0.78497 1.19637 1.19900 1.20014 1.24840 0.76084 0.82653 0.84051 1.90473 1.37120 1.27247 1.87106 1.86649 1.69959 1.55454 1.14872 1.22821 1.01943 0.96786 0.82040 1.20539 0.80631 0.84321 0.85070 1.90842 1.34891 1.24490 1.86746 1.43230 1.47239 1.36436 1.02573 1.18846 0.93580 0.91351 0.86468 1.21854 1.05676 1.03897 0.90313 1.21899 0.92491 0.93604 0.99375 1.22436 1.01484 0.98511 0.99128 1.22995 0.95934 0.98777 0.87629 1.67525 1.11775 1.10873 1.34666 0.90304 0.94787 0.94116 0.92264 0.86034 0.86122 0.71982 0.81092 0.80520 0.81662 0.81976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.10 8.90 71.98 0.64 -5.46 16 2 C 0.05 2.64 2.74 -12.29 -0.03 2.60 16 3 H 0.05 2.69 8.14 -2.39 -0.02 2.67 16 4 C -0.54 -30.63 8.37 25.60 0.21 -30.42 16 5 H 0.06 3.69 6.76 -2.91 -0.02 3.67 16 6 C 0.02 1.04 5.30 84.65 0.45 1.49 16 7 N -0.91 -51.85 11.32 21.45 0.24 -51.60 16 8 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 C 0.48 22.83 7.25 71.24 0.52 23.35 16 13 O -0.53 -26.13 15.21 21.97 0.33 -25.80 16 14 O -0.35 -14.87 9.66 -45.09 -0.44 -15.31 16 15 C 0.04 1.23 5.95 71.24 0.42 1.65 16 16 C 0.51 15.55 7.87 87.66 0.69 16.23 16 17 O -0.50 -20.71 14.77 15.79 0.23 -20.47 16 18 N -0.64 -13.43 5.39 -308.45 -1.66 -15.09 16 19 C 0.33 7.46 7.42 132.92 0.99 8.45 16 20 C -0.19 -2.56 9.94 22.49 0.22 -2.33 16 21 C -0.05 -0.49 10.17 22.44 0.23 -0.26 16 22 C -0.19 -2.51 10.11 22.37 0.23 -2.29 16 23 C 0.10 2.19 11.17 84.64 0.95 3.13 16 24 N -0.53 -15.57 7.89 -193.04 -1.52 -17.10 16 25 H 0.08 4.23 6.07 -2.39 -0.01 4.21 16 26 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.04 1.87 8.11 -2.39 -0.02 1.85 16 28 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.12 3.02 8.13 -2.39 -0.02 3.00 16 30 H 0.12 3.04 8.13 -2.38 -0.02 3.02 16 31 H 0.44 4.68 8.70 -92.71 -0.81 3.87 16 32 H 0.17 0.93 8.06 -2.91 -0.02 0.90 16 33 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 34 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 35 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -79.83 313.02 5.04 -74.79 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.32 Total: 8.40 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 5.51 Total: 16.15 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -2.94 Total: -83.79 kcal Atomic # 8 Polarization: -61.71 SS G_CDS: 0.13 Total: -61.57 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -79.83 5.04 -74.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869550624.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.056 kcal (2) G-P(sol) polarization free energy of solvation -79.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds