Wall clock time and date at job start Tue Mar 31 2020 01:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47187 * 2 1 4 4 C 1.50700 * 109.46831 * 120.00128 * 2 1 3 5 5 H 1.08002 * 119.99901 * 120.00001 * 4 2 1 6 6 C 1.37876 * 119.99869 * 299.99646 * 4 2 1 7 7 N 1.31513 * 120.00023 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99833 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47008 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47225 * 299.99983 * 8 6 4 11 11 H 1.48498 * 109.47075 * 60.00383 * 8 6 4 12 12 C 1.50698 * 109.47037 * 239.99391 * 2 1 3 13 13 O 1.20829 * 120.00655 * 240.00169 * 12 2 1 14 14 O 1.34231 * 119.99759 * 60.00436 * 12 2 1 15 15 C 1.45198 * 117.00323 * 179.97438 * 14 12 2 16 16 C 1.50704 * 109.47502 * 180.02562 * 15 14 12 17 17 O 1.21279 * 119.99560 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99982 * 180.02562 * 16 15 14 19 19 C 1.39403 * 119.99703 * 174.91640 * 18 16 15 20 20 C 1.39045 * 119.69443 * 185.06555 * 19 18 16 21 21 C 1.38356 * 119.10095 * 179.97438 * 20 19 18 22 22 C 1.38847 * 118.49450 * 0.02562 * 21 20 19 23 23 C 1.38070 * 119.30921 * 359.97438 * 22 21 20 24 24 N 1.31935 * 120.84942 * 359.73267 * 23 22 21 25 25 H 1.09003 * 109.46863 * 59.99914 * 1 2 3 26 26 H 1.08998 * 109.47187 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46873 * 300.00212 * 1 2 3 28 28 H 0.97001 * 119.99590 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.47220 * 300.00166 * 15 14 12 30 30 H 1.09003 * 109.46808 * 60.00282 * 15 14 12 31 31 H 0.96998 * 120.00081 * 354.91300 * 18 16 15 32 32 H 1.08000 * 120.44657 * 359.97438 * 20 19 18 33 33 H 1.08001 * 120.75425 * 179.97438 * 21 20 19 34 34 H 1.08002 * 120.34116 * 180.02562 * 22 21 20 35 35 H 1.08002 * 119.57009 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8297 2.6033 8 14 2.3224 -1.1196 4.0080 9 1 1.8278 -0.4192 5.2205 10 1 1.8279 -2.5198 4.0082 11 1 3.8073 -1.1190 4.0078 12 6 2.0323 -0.7105 -1.2304 13 8 2.7269 -1.6930 -1.1196 14 8 1.7081 -0.2520 -2.4495 15 6 2.2276 -0.9859 -3.5896 16 6 1.7636 -0.3287 -4.8640 17 8 1.0636 0.6605 -4.8160 18 7 2.1258 -0.8409 -6.0568 19 6 1.6116 -0.2981 -7.2334 20 6 1.9051 -0.8965 -8.4538 21 6 1.3879 -0.3478 -9.6138 22 6 0.5920 0.7854 -9.5131 23 6 0.3416 1.3270 -8.2679 24 7 0.8439 0.7785 -7.1782 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.7088 1.1613 3.4844 29 1 3.3171 -0.9848 -3.5565 30 1 1.8640 -2.0129 -3.5568 31 1 2.7442 -1.5871 -6.0967 32 1 2.5283 -1.7775 -8.4955 33 1 1.5991 -0.7905 -10.5760 34 1 0.1725 1.2380 -10.3994 35 1 -0.2765 2.2087 -8.1847 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869550625.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:20 Heat of formation + Delta-G solvation = -69.872958 kcal Electronic energy + Delta-G solvation = -20489.900295 eV Core-core repulsion = 17067.993029 eV Total energy + Delta-G solvation = -3421.907266 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.96301 -39.79751 -38.81762 -35.75579 -35.01678 -33.88972 -32.64809 -30.92451 -30.47865 -28.24710 -25.18648 -24.19823 -23.60273 -22.76588 -20.68141 -19.87182 -18.49521 -17.27987 -16.77123 -16.42235 -16.33059 -16.00084 -15.72165 -15.29971 -15.06986 -14.67802 -14.28344 -13.90502 -13.54235 -13.29288 -12.84851 -12.60211 -12.30018 -12.09540 -11.52501 -11.03649 -11.00136 -10.81836 -10.68134 -10.36074 -10.24991 -10.22200 -10.10935 -10.06169 -9.27758 -9.13220 -9.03983 -8.54084 -8.44049 -6.09259 -4.15590 0.83997 1.07117 2.33571 2.54970 3.22023 3.33144 3.36000 3.39019 3.57038 3.69001 4.17972 4.42243 4.52087 4.61142 4.77354 4.85319 4.97551 5.18019 5.19052 5.23932 5.40752 5.64774 5.87989 5.97432 6.01938 6.51753 6.70487 6.86366 6.90166 6.93185 7.12495 7.45269 7.75910 7.80824 7.95041 8.11858 8.14545 8.76140 8.92261 9.49750 10.98016 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.053524 B = 0.002998 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.003490 B = 9337.832138 C = 9768.810782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.060 3.940 3 H 0.067 0.933 4 C -0.515 4.515 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.906 3.094 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.468 3.532 13 O -0.517 6.517 14 O -0.341 6.341 15 C 0.047 3.953 16 C 0.503 3.497 17 O -0.441 6.441 18 N -0.663 5.663 19 C 0.366 3.634 20 C -0.210 4.210 21 C -0.048 4.048 22 C -0.210 4.210 23 C 0.135 3.865 24 N -0.478 5.478 25 H 0.027 0.973 26 H 0.031 0.969 27 H 0.097 0.903 28 H 0.264 0.736 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.418 0.582 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.312 -3.048 -23.620 23.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.041 3.959 3 H 0.085 0.915 4 C -0.553 4.553 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.734 3.266 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.313 3.687 13 O -0.404 6.404 14 O -0.258 6.258 15 C -0.032 4.032 16 C 0.288 3.712 17 O -0.306 6.306 18 N -0.312 5.312 19 C 0.135 3.865 20 C -0.234 4.234 21 C -0.075 4.075 22 C -0.232 4.232 23 C -0.023 4.023 24 N -0.192 5.192 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.255 0.745 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.739 -2.143 -22.444 22.559 hybrid contribution 0.965 -1.411 -0.185 1.720 sum 1.704 -3.554 -22.629 22.970 Atomic orbital electron populations 1.21748 0.95405 1.00082 1.02039 1.18791 0.95032 0.97072 0.84966 0.91546 1.21081 1.32169 1.13321 0.88723 0.90660 1.24943 0.94884 0.95019 0.99128 1.69878 1.36280 1.22715 1.24017 0.86416 0.79249 0.79631 0.81316 1.21203 1.20091 1.20092 1.25586 0.76402 0.83217 0.83505 1.90498 1.36555 1.26777 1.86568 1.86744 1.69920 1.54760 1.14392 1.22400 1.00448 0.96313 0.84004 1.20581 0.81466 0.85123 0.84070 1.90862 1.31919 1.21954 1.85850 1.43541 1.47544 1.36328 1.03830 1.18488 0.91996 0.90612 0.85381 1.21461 1.06648 1.03589 0.91686 1.21347 0.93746 0.94294 0.98080 1.22071 1.02807 0.98848 0.99449 1.22738 0.94895 0.97796 0.86914 1.67708 1.10132 1.09090 1.32290 0.95432 0.95002 0.88485 0.92574 0.88543 0.88488 0.74475 0.84607 0.84563 0.84763 0.82351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 8.90 37.16 0.33 -2.98 16 2 C 0.06 1.57 2.74 -92.92 -0.25 1.31 16 3 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 4 C -0.51 -14.51 8.37 -34.44 -0.29 -14.79 16 5 H 0.08 2.18 6.76 -52.49 -0.35 1.82 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.09 11.32 55.43 0.63 -24.47 16 8 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.47 11.06 7.25 36.00 0.26 11.32 16 13 O -0.52 -12.75 15.21 -18.75 -0.29 -13.03 16 14 O -0.34 -7.13 9.66 -45.91 -0.44 -7.57 16 15 C 0.05 0.71 5.95 36.01 0.21 0.93 16 16 C 0.50 7.67 7.87 -10.98 -0.09 7.58 16 17 O -0.44 -8.78 14.77 -14.10 -0.21 -8.99 16 18 N -0.66 -7.28 5.39 -11.42 -0.06 -7.34 16 19 C 0.37 4.35 7.42 -154.71 -1.15 3.20 16 20 C -0.21 -1.72 9.94 -39.24 -0.39 -2.11 16 21 C -0.05 -0.34 10.17 -39.31 -0.40 -0.74 16 22 C -0.21 -1.63 10.11 -39.42 -0.40 -2.03 16 23 C 0.13 1.43 11.17 -17.57 -0.20 1.23 16 24 N -0.48 -6.84 7.89 -12.37 -0.10 -6.94 16 25 H 0.03 0.61 8.11 -51.93 -0.42 0.19 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.10 2.55 6.07 -51.93 -0.32 2.23 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 30 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 31 H 0.42 2.70 8.70 -40.82 -0.36 2.35 16 32 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 34 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 313.01 15.07 4.72 4.72 Total: -1.00 -35.53 313.01 -7.19 -42.71 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -3.96 Total: -0.13 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -2.45 Total: 4.54 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.47 Total: -38.74 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.94 Total: -29.59 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.53 -7.19 -42.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869550625.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.161 kcal (2) G-P(sol) polarization free energy of solvation -35.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds