Wall clock time and date at job start Tue Mar 31 2020 01:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21273 * 119.99567 * 2 1 4 4 C 1.46981 * 120.00243 * 180.02562 * 2 1 3 5 5 C 1.39921 * 120.17346 * 359.97438 * 4 2 1 6 6 C 1.38242 * 119.79690 * 179.97438 * 5 4 2 7 7 O 1.35958 * 119.93367 * 180.02562 * 6 5 4 8 8 C 1.42897 * 116.99904 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47374 * 179.97438 * 8 7 6 10 10 C 1.50700 * 115.55078 * 294.88504 * 9 8 7 11 11 H 1.08001 * 120.00324 * 99.38544 * 10 9 8 12 12 C 1.37879 * 119.99442 * 279.38583 * 10 9 8 13 13 N 1.31510 * 120.00586 * 5.98844 * 12 10 9 14 14 Si 1.86802 * 119.99771 * 185.98700 * 12 10 9 15 15 H 1.48502 * 109.47305 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47119 * 119.99851 * 14 12 10 17 17 H 1.48506 * 109.47405 * 240.00058 * 14 12 10 18 18 C 1.53000 * 117.51603 * 80.57879 * 9 8 7 19 19 C 1.52997 * 117.50196 * 149.20789 * 9 8 7 20 20 C 1.38962 * 120.13349 * 0.27504 * 6 5 4 21 21 C 1.38164 * 120.34714 * 359.45093 * 20 6 5 22 22 C 1.38268 * 120.20724 * 0.54905 * 21 20 6 23 23 F 1.35103 * 120.07428 * 179.70539 * 22 21 20 24 24 H 1.09004 * 109.46453 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47247 * 299.99559 * 1 2 3 26 26 H 1.08997 * 109.46855 * 60.00355 * 1 2 3 27 27 H 1.08002 * 120.10201 * 0.02562 * 5 4 2 28 28 H 1.09004 * 109.47294 * 59.99786 * 8 7 6 29 29 H 1.08998 * 109.47619 * 299.99859 * 8 7 6 30 30 H 0.96999 * 120.00426 * 180.02562 * 13 12 10 31 31 H 1.08999 * 117.49885 * 214.97725 * 18 9 8 32 32 H 1.09001 * 117.49906 * 359.97438 * 18 9 8 33 33 H 1.09009 * 117.49397 * 359.97438 * 19 9 8 34 34 H 1.09001 * 117.50009 * 144.97719 * 19 9 8 35 35 H 1.08003 * 119.82600 * 179.72230 * 20 6 5 36 36 H 1.08000 * 119.89835 * 180.27407 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 6 2.2420 -1.2729 -0.0006 5 6 1.5461 -2.4867 -0.0006 6 6 2.2453 -3.6794 -0.0016 7 8 1.5719 -4.8605 -0.0022 8 6 2.3567 -6.0546 -0.0027 9 6 1.4314 -7.2731 -0.0026 10 6 0.5831 -7.4450 1.2311 11 1 -0.4489 -7.1266 1.2255 12 6 1.1246 -8.0088 2.3668 13 7 2.4088 -8.2882 2.4143 14 14 0.0340 -8.3758 3.8384 15 1 -1.3616 -7.9703 3.5336 16 1 0.0740 -9.8306 4.1335 17 1 0.5228 -7.6178 5.0181 18 6 0.8265 -7.7015 -1.3411 19 6 1.9323 -8.5407 -0.6978 20 6 3.6348 -3.6734 0.0030 21 6 4.3278 -2.4781 -0.0026 22 6 3.6430 -1.2770 -0.0016 23 9 4.3233 -0.1097 -0.0011 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.4661 -2.4920 -0.0006 28 1 2.9857 -6.0765 0.8873 29 1 2.9857 -6.0758 -0.8927 30 1 2.7897 -8.6852 3.2132 31 1 -0.1849 -8.1076 -1.3294 32 1 1.0874 -7.1149 -2.2220 33 1 2.9210 -8.5063 -1.1556 34 1 1.6487 -9.4989 -0.2626 35 1 4.1760 -4.6081 0.0067 36 1 5.4078 -2.4820 -0.0034 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871801720.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:59 Heat of formation + Delta-G solvation = -69.761554 kcal Electronic energy + Delta-G solvation = -20976.689776 eV Core-core repulsion = 17534.867379 eV Total energy + Delta-G solvation = -3441.822397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.70126 -40.06156 -39.02169 -37.16096 -35.78684 -32.24017 -32.07221 -29.64486 -29.30228 -26.71708 -25.43797 -23.89201 -22.23772 -21.26490 -20.07905 -19.27783 -17.87154 -17.12866 -16.80789 -16.02579 -15.72376 -15.52401 -15.06619 -14.72650 -14.63458 -14.52872 -14.32746 -14.10370 -13.53587 -12.93871 -12.87054 -12.30641 -12.22532 -12.12732 -11.89378 -11.75351 -11.23838 -11.06373 -10.86693 -10.57489 -10.44166 -10.26612 -9.77698 -9.71451 -9.19612 -8.95639 -8.58366 -8.33405 -7.85229 -6.17470 -4.21676 0.51944 1.31399 2.35322 3.21967 3.31157 3.35075 3.59051 3.67568 3.96378 4.30354 4.32288 4.66209 4.85593 5.09964 5.12128 5.19038 5.20753 5.30889 5.36865 5.43582 5.76839 5.79298 5.87569 6.03446 6.06810 6.12368 6.15723 6.29417 6.45607 6.48514 6.61957 6.75665 6.89880 7.22357 7.29795 7.42405 7.77823 7.91444 8.28496 8.80278 9.44893 10.92328 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020473 B = 0.004403 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.335504 B = 6358.456861 C = 6669.079845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.397 3.603 3 O -0.452 6.452 4 C -0.173 4.173 5 C -0.093 4.093 6 C 0.130 3.870 7 O -0.289 6.289 8 C 0.101 3.899 9 C 0.040 3.960 10 C -0.487 4.487 11 H 0.064 0.936 12 C 0.070 3.930 13 N -0.884 5.884 14 Si 0.892 3.108 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.284 1.284 18 C -0.203 4.203 19 C -0.151 4.151 20 C -0.152 4.152 21 C -0.125 4.125 22 C 0.099 3.901 23 F -0.127 7.127 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.151 0.849 28 H 0.075 0.925 29 H 0.032 0.968 30 H 0.261 0.739 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.145 0.855 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.159 9.365 -5.285 10.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.275 3.725 3 O -0.328 6.328 4 C -0.175 4.175 5 C -0.111 4.111 6 C 0.082 3.918 7 O -0.201 6.201 8 C 0.027 3.973 9 C 0.040 3.960 10 C -0.525 4.525 11 H 0.082 0.918 12 C -0.133 4.133 13 N -0.521 5.521 14 Si 0.719 3.281 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.241 4.241 19 C -0.188 4.188 20 C -0.171 4.171 21 C -0.144 4.144 22 C 0.079 3.921 23 F -0.105 7.105 24 H 0.107 0.893 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.168 0.832 28 H 0.093 0.907 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.162 0.838 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.429 9.822 -5.158 11.102 hybrid contribution 0.011 -0.376 0.898 0.974 sum 0.441 9.446 -4.260 10.371 Atomic orbital electron populations 1.22236 0.93224 1.05380 1.04888 1.22319 0.91890 0.87019 0.71236 1.90578 1.72098 1.33974 1.36141 1.20320 0.92354 0.95620 1.09169 1.20621 1.00792 0.88143 1.01574 1.19115 0.90438 0.87791 0.94423 1.86246 1.35925 1.11653 1.86246 1.22717 0.93698 0.81620 0.99314 1.18718 0.96681 0.89254 0.91368 1.20429 0.96819 1.40431 0.94819 0.91806 1.24984 0.94943 0.95011 0.98376 1.69965 1.10874 1.42550 1.28711 0.86536 0.81045 0.78035 0.82465 1.19551 1.20894 1.20974 1.22971 0.97980 1.05787 0.97315 1.22589 0.95709 0.96998 1.03533 1.21524 0.93671 0.99100 1.02847 1.20902 1.00874 0.90377 1.02274 1.17695 0.88903 0.81719 1.03770 1.91530 1.79443 1.45990 1.93563 0.89259 0.88652 0.88702 0.83176 0.90682 0.94950 0.92911 0.90045 0.91405 0.91639 0.89532 0.83765 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.85 10.19 36.01 0.37 -1.48 16 2 C 0.40 5.36 7.22 -30.77 -0.22 5.14 16 3 O -0.45 -7.52 16.08 5.56 0.09 -7.43 16 4 C -0.17 -2.48 5.87 -105.03 -0.62 -3.10 16 5 C -0.09 -1.32 9.38 -38.95 -0.37 -1.68 16 6 C 0.13 2.15 6.68 -39.31 -0.26 1.89 16 7 O -0.29 -5.68 10.06 -19.61 -0.20 -5.88 16 8 C 0.10 2.08 4.56 37.16 0.17 2.25 16 9 C 0.04 0.92 1.53 -155.66 -0.24 0.69 16 10 C -0.49 -12.57 8.74 -34.44 -0.30 -12.88 16 11 H 0.06 1.68 7.82 -52.49 -0.41 1.26 16 12 C 0.07 1.81 5.42 -17.82 -0.10 1.72 16 13 N -0.88 -23.53 13.11 55.43 0.73 -22.80 16 14 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 C -0.20 -4.11 9.96 -26.73 -0.27 -4.38 16 19 C -0.15 -3.23 9.68 -26.73 -0.26 -3.48 16 20 C -0.15 -2.29 9.03 -39.34 -0.36 -2.64 16 21 C -0.13 -1.73 10.00 -39.60 -0.40 -2.13 16 22 C 0.10 1.50 7.29 -38.87 -0.28 1.22 16 23 F -0.13 -2.07 15.54 2.25 0.04 -2.03 16 24 H 0.09 0.72 5.60 -51.93 -0.29 0.43 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.15 1.80 5.93 -52.49 -0.31 1.49 16 28 H 0.08 1.67 7.64 -51.93 -0.40 1.28 16 29 H 0.03 0.59 7.62 -51.93 -0.40 0.20 16 30 H 0.26 6.67 8.31 -40.82 -0.34 6.34 16 31 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 34 H 0.09 1.97 8.14 -51.93 -0.42 1.54 16 35 H 0.14 2.07 6.27 -52.48 -0.33 1.74 16 36 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 317.30 15.07 4.78 4.78 Total: -1.00 -28.85 317.30 -6.94 -35.79 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -4.23 Total: 1.19 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -3.13 Total: -18.88 kcal Atomic # 7 Polarization: -23.53 SS G_CDS: 0.73 Total: -22.80 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.11 Total: -13.31 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.85 -6.94 -35.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871801720.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.969 kcal (2) G-P(sol) polarization free energy of solvation -28.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds