Wall clock time and date at job start Tue Mar 31 2020 01:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21273 * 119.99567 * 2 1 4 4 C 1.46981 * 120.00243 * 180.02562 * 2 1 3 5 5 C 1.39921 * 120.17346 * 359.97438 * 4 2 1 6 6 C 1.38242 * 119.79690 * 179.97438 * 5 4 2 7 7 O 1.35958 * 119.93367 * 180.02562 * 6 5 4 8 8 C 1.42897 * 116.99904 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47374 * 179.97438 * 8 7 6 10 10 C 1.50700 * 115.55078 * 294.88504 * 9 8 7 11 11 H 1.08001 * 120.00324 * 99.38544 * 10 9 8 12 12 C 1.37879 * 119.99442 * 279.38583 * 10 9 8 13 13 N 1.31510 * 120.00586 * 5.98844 * 12 10 9 14 14 Si 1.86802 * 119.99771 * 185.98700 * 12 10 9 15 15 H 1.48502 * 109.47305 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47119 * 119.99851 * 14 12 10 17 17 H 1.48506 * 109.47405 * 240.00058 * 14 12 10 18 18 C 1.53000 * 117.51603 * 80.57879 * 9 8 7 19 19 C 1.52997 * 117.50196 * 149.20789 * 9 8 7 20 20 C 1.38962 * 120.13349 * 0.27504 * 6 5 4 21 21 C 1.38164 * 120.34714 * 359.45093 * 20 6 5 22 22 C 1.38268 * 120.20724 * 0.54905 * 21 20 6 23 23 F 1.35103 * 120.07428 * 179.70539 * 22 21 20 24 24 H 1.09004 * 109.46453 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47247 * 299.99559 * 1 2 3 26 26 H 1.08997 * 109.46855 * 60.00355 * 1 2 3 27 27 H 1.08002 * 120.10201 * 0.02562 * 5 4 2 28 28 H 1.09004 * 109.47294 * 59.99786 * 8 7 6 29 29 H 1.08998 * 109.47619 * 299.99859 * 8 7 6 30 30 H 0.96999 * 120.00426 * 180.02562 * 13 12 10 31 31 H 1.08999 * 117.49885 * 214.97725 * 18 9 8 32 32 H 1.09001 * 117.49906 * 359.97438 * 18 9 8 33 33 H 1.09009 * 117.49397 * 359.97438 * 19 9 8 34 34 H 1.09001 * 117.50009 * 144.97719 * 19 9 8 35 35 H 1.08003 * 119.82600 * 179.72230 * 20 6 5 36 36 H 1.08000 * 119.89835 * 180.27407 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 6 2.2420 -1.2729 -0.0006 5 6 1.5461 -2.4867 -0.0006 6 6 2.2453 -3.6794 -0.0016 7 8 1.5719 -4.8605 -0.0022 8 6 2.3567 -6.0546 -0.0027 9 6 1.4314 -7.2731 -0.0026 10 6 0.5831 -7.4450 1.2311 11 1 -0.4489 -7.1266 1.2255 12 6 1.1246 -8.0088 2.3668 13 7 2.4088 -8.2882 2.4143 14 14 0.0340 -8.3758 3.8384 15 1 -1.3616 -7.9703 3.5336 16 1 0.0740 -9.8306 4.1335 17 1 0.5228 -7.6178 5.0181 18 6 0.8265 -7.7015 -1.3411 19 6 1.9323 -8.5407 -0.6978 20 6 3.6348 -3.6734 0.0030 21 6 4.3278 -2.4781 -0.0026 22 6 3.6430 -1.2770 -0.0016 23 9 4.3233 -0.1097 -0.0011 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.4661 -2.4920 -0.0006 28 1 2.9857 -6.0765 0.8873 29 1 2.9857 -6.0758 -0.8927 30 1 2.7897 -8.6852 3.2132 31 1 -0.1849 -8.1076 -1.3294 32 1 1.0874 -7.1149 -2.2220 33 1 2.9210 -8.5063 -1.1556 34 1 1.6487 -9.4989 -0.2626 35 1 4.1760 -4.6081 0.0067 36 1 5.4078 -2.4820 -0.0034 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871801720.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:58 Heat of formation + Delta-G solvation = -84.305046 kcal Electronic energy + Delta-G solvation = -20977.320429 eV Core-core repulsion = 17534.867379 eV Total energy + Delta-G solvation = -3442.453050 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.93496 -41.28240 -40.24831 -38.61240 -37.28256 -34.01078 -33.32594 -30.83353 -30.27546 -28.28539 -27.26937 -25.07236 -23.42608 -22.89299 -21.40346 -20.84220 -19.04808 -18.54600 -18.16589 -17.56339 -16.99148 -16.73020 -16.64788 -16.24290 -15.91122 -15.79187 -15.57680 -15.20961 -15.01337 -14.53912 -14.05407 -13.63701 -13.41358 -13.35045 -13.03937 -12.97890 -12.91698 -12.82286 -12.41573 -12.21496 -12.04443 -11.78879 -11.43521 -10.86556 -10.74943 -10.47546 -10.32257 -10.05096 -9.13279 -8.12883 -6.21291 -0.61354 0.13497 1.26774 1.40710 1.45311 1.54468 2.23868 2.44240 2.51172 2.93328 3.15006 3.17806 3.53765 3.56281 3.80986 4.08149 4.15343 4.19662 4.25469 4.43782 4.47607 4.52701 4.64910 4.69578 4.82289 4.86381 4.90257 4.97230 5.01076 5.11549 5.23089 5.24855 5.52614 5.56615 5.62811 5.78583 6.37253 6.39421 6.55233 6.82790 7.47005 8.95998 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020473 B = 0.004403 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.335504 B = 6358.456861 C = 6669.079845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.398 3.602 3 O -0.490 6.490 4 C -0.179 4.179 5 C -0.080 4.080 6 C 0.104 3.896 7 O -0.307 6.307 8 C 0.115 3.885 9 C 0.006 3.994 10 C -0.500 4.500 11 H 0.050 0.950 12 C 0.029 3.971 13 N -0.907 5.907 14 Si 0.943 3.057 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.284 1.284 18 C -0.181 4.181 19 C -0.151 4.151 20 C -0.153 4.153 21 C -0.118 4.118 22 C 0.084 3.916 23 F -0.136 7.136 24 H 0.103 0.897 25 H 0.110 0.890 26 H 0.113 0.887 27 H 0.174 0.826 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.261 0.739 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.149 0.851 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.518 9.933 -5.846 11.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.278 3.722 3 O -0.368 6.368 4 C -0.181 4.181 5 C -0.098 4.098 6 C 0.058 3.942 7 O -0.220 6.220 8 C 0.041 3.959 9 C 0.005 3.995 10 C -0.538 4.538 11 H 0.069 0.931 12 C -0.171 4.171 13 N -0.545 5.545 14 Si 0.770 3.230 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.210 1.210 18 C -0.218 4.218 19 C -0.189 4.189 20 C -0.172 4.172 21 C -0.136 4.136 22 C 0.064 3.936 23 F -0.114 7.114 24 H 0.121 0.879 25 H 0.128 0.872 26 H 0.131 0.869 27 H 0.191 0.809 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.167 0.833 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.260 10.389 -5.726 11.865 hybrid contribution 0.225 -0.495 1.046 1.179 sum -0.035 9.894 -4.680 10.945 Atomic orbital electron populations 1.22283 0.89544 1.06800 1.06399 1.22895 0.93765 0.85872 0.69622 1.90571 1.73208 1.34902 1.38124 1.20571 0.92318 0.96340 1.08834 1.20807 1.01900 0.87129 0.99972 1.19380 0.91251 0.87334 0.96277 1.86180 1.36414 1.12179 1.87239 1.22346 0.92932 0.81498 0.99164 1.18872 0.98024 0.90884 0.91678 1.20650 0.96655 1.40160 0.96340 0.93150 1.25566 0.95930 0.95164 1.00471 1.70042 1.11853 1.43375 1.29203 0.85729 0.79717 0.77760 0.79825 1.19296 1.20653 1.21004 1.22977 0.97498 1.04574 0.96795 1.22526 0.97097 0.95621 1.03628 1.21610 0.93312 0.99710 1.02580 1.21092 1.02122 0.89371 1.01057 1.18038 0.89584 0.81818 1.04162 1.91508 1.79666 1.46567 1.93699 0.87883 0.87190 0.86857 0.80903 0.93209 0.92640 0.93032 0.90222 0.88844 0.89860 0.91605 0.83344 0.81744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.01 10.19 71.24 0.73 -2.29 16 2 C 0.40 10.11 7.22 27.98 0.20 10.32 16 3 O -0.49 -15.93 16.08 -3.01 -0.05 -15.98 16 4 C -0.18 -4.89 5.87 -20.13 -0.12 -5.01 16 5 C -0.08 -2.13 9.38 22.68 0.21 -1.91 16 6 C 0.10 3.32 6.68 22.44 0.15 3.47 16 7 O -0.31 -11.80 10.06 -93.08 -0.94 -12.73 16 8 C 0.12 4.67 4.56 71.98 0.33 5.00 16 9 C 0.01 0.26 1.53 -52.93 -0.08 0.18 16 10 C -0.50 -25.88 8.74 25.60 0.22 -25.65 16 11 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 12 C 0.03 1.51 5.42 84.66 0.46 1.97 16 13 N -0.91 -48.58 13.11 21.45 0.28 -48.30 16 14 Si 0.94 41.66 29.54 68.60 2.03 43.69 16 15 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 16 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 18 C -0.18 -7.03 9.96 30.59 0.30 -6.73 16 19 C -0.15 -6.34 9.68 30.59 0.30 -6.05 16 20 C -0.15 -4.42 9.03 22.43 0.20 -4.22 16 21 C -0.12 -3.08 10.00 22.26 0.22 -2.86 16 22 C 0.08 2.45 7.29 22.73 0.17 2.62 16 23 F -0.14 -4.36 15.54 44.97 0.70 -3.66 16 24 H 0.10 1.31 5.60 -2.39 -0.01 1.30 16 25 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.17 3.69 5.93 -2.91 -0.02 3.67 16 28 H 0.05 2.23 7.64 -2.38 -0.02 2.22 16 29 H 0.06 1.94 7.62 -2.39 -0.02 1.92 16 30 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 31 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 33 H 0.08 3.14 8.14 -2.38 -0.02 3.12 16 34 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 35 H 0.15 4.11 6.27 -2.91 -0.02 4.09 16 36 H 0.17 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -61.80 317.30 6.42 -55.38 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 1.10 Total: 12.76 kcal Atomic # 6 Polarization: -34.46 SS G_CDS: 3.29 Total: -31.16 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.28 Total: -48.30 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.98 Total: -28.71 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.70 Total: -3.66 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -61.80 6.42 -55.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871801720.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.921 kcal (2) G-P(sol) polarization free energy of solvation -61.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds