Wall clock time and date at job start Tue Mar 31 2020 01:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99670 * 2 1 4 4 C 1.46990 * 120.00150 * 180.02562 * 2 1 3 5 5 C 1.40004 * 120.17094 * 359.97438 * 4 2 1 6 6 C 1.37757 * 119.95231 * 180.02562 * 5 4 2 7 7 C 1.38482 * 120.30375 * 0.27444 * 6 5 4 8 8 C 1.38634 * 120.34391 * 359.44693 * 7 6 5 9 9 O 1.35970 * 119.97829 * 180.27706 * 8 7 6 10 10 C 1.42895 * 117.00297 * 354.70531 * 9 8 7 11 11 C 1.52999 * 109.47486 * 179.43591 * 10 9 8 12 12 C 1.50703 * 115.54608 * 279.86746 * 11 10 9 13 13 H 1.07994 * 120.00134 * 144.24741 * 12 11 10 14 14 C 1.37874 * 119.99849 * 324.23778 * 12 11 10 15 15 N 1.31521 * 120.00374 * 338.10224 * 14 12 11 16 16 Si 1.86801 * 119.99909 * 158.10138 * 14 12 11 17 17 H 1.48496 * 109.47284 * 90.00021 * 16 14 12 18 18 H 1.48505 * 109.46862 * 210.00335 * 16 14 12 19 19 H 1.48503 * 109.46859 * 329.99765 * 16 14 12 20 20 C 1.52999 * 117.50011 * 134.15652 * 11 10 9 21 21 C 1.52999 * 117.49764 * 65.52888 * 11 10 9 22 22 C 1.38774 * 120.03941 * 0.55297 * 8 7 6 23 23 F 1.35101 * 120.14991 * 179.70476 * 22 8 7 24 24 H 1.09000 * 109.46760 * 269.99054 * 1 2 3 25 25 H 1.08990 * 109.47340 * 29.99546 * 1 2 3 26 26 H 1.09004 * 109.46636 * 149.99925 * 1 2 3 27 27 H 1.07991 * 120.02785 * 0.04293 * 5 4 2 28 28 H 1.08000 * 119.85125 * 180.02562 * 6 5 4 29 29 H 1.08002 * 119.82505 * 179.72763 * 7 6 5 30 30 H 1.09005 * 109.47010 * 299.43402 * 10 9 8 31 31 H 1.08996 * 109.47594 * 59.42709 * 10 9 8 32 32 H 0.96995 * 120.00423 * 185.34541 * 15 14 12 33 33 H 1.08994 * 117.50334 * 359.97438 * 20 11 10 34 34 H 1.08997 * 117.49722 * 145.02567 * 20 11 10 35 35 H 1.08997 * 117.49826 * 214.97970 * 21 11 10 36 36 H 1.08998 * 117.50087 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 6 2.2420 -1.2730 -0.0006 5 6 1.5456 -2.4875 -0.0006 6 6 2.2390 -3.6779 -0.0006 7 6 3.6238 -3.6799 0.0052 8 6 4.3260 -2.4845 -0.0006 9 8 5.6856 -2.4952 -0.0006 10 6 6.3244 -3.7675 0.1229 11 6 7.8427 -3.5813 0.0893 12 6 8.4460 -3.4080 -1.2807 13 1 9.2863 -2.7442 -1.4207 14 6 7.9253 -4.0971 -2.3554 15 7 7.2249 -5.1925 -2.1574 16 14 8.2148 -3.4749 -4.0928 17 1 9.4627 -4.0731 -4.6314 18 1 7.0686 -3.8614 -4.9543 19 1 8.3430 -1.9956 -4.0738 20 6 8.6696 -4.3301 1.1365 21 6 8.4862 -2.8150 1.2467 22 6 3.6420 -1.2771 -0.0006 23 9 4.3240 -0.1108 -0.0002 24 1 -0.3633 -0.0002 1.0277 25 1 -0.3633 0.8899 -0.5137 26 1 -0.3633 -0.8900 -0.5139 27 1 0.4657 -2.4913 -0.0009 28 1 1.7002 -4.6139 -0.0010 29 1 4.1596 -4.6177 0.0096 30 1 6.0358 -4.2288 1.0674 31 1 6.0187 -4.4094 -0.7032 32 1 6.9245 -5.7196 -2.9142 33 1 8.1320 -4.9550 1.8496 34 1 9.6503 -4.6976 0.8345 35 1 9.3463 -2.1860 1.0173 36 1 7.8279 -2.4431 2.0319 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871802712.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:01 Heat of formation + Delta-G solvation = -64.828725 kcal Electronic energy + Delta-G solvation = -21417.689275 eV Core-core repulsion = 17976.080781 eV Total energy + Delta-G solvation = -3441.608493 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.42234 -39.89305 -38.98258 -37.21928 -35.80834 -32.31365 -31.66937 -30.21272 -28.96817 -26.66699 -25.52355 -23.60225 -22.21757 -21.24179 -20.06293 -19.15584 -17.81928 -16.90205 -16.68114 -16.00044 -15.78612 -15.65155 -15.00190 -14.68594 -14.62520 -14.47521 -14.24141 -13.99384 -13.35103 -12.85987 -12.58926 -12.39087 -12.33368 -11.85113 -11.82753 -11.53694 -11.32992 -11.09029 -10.91513 -10.53064 -10.41353 -10.17759 -9.76673 -9.55960 -9.25475 -8.84562 -8.82601 -8.18451 -7.81047 -6.23965 -4.16547 0.59323 1.40898 2.40706 3.21904 3.30940 3.39944 3.51474 3.73527 4.13132 4.29894 4.41508 4.75622 4.86755 4.91746 5.01952 5.19006 5.23194 5.28938 5.44067 5.55049 5.83825 5.87646 5.96662 6.08102 6.13815 6.25080 6.30918 6.38313 6.54603 6.61954 6.64838 6.85840 6.91629 7.24782 7.27296 7.47780 7.80019 8.00443 8.27855 8.74820 9.38876 10.80313 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019256 B = 0.005275 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.773088 B = 5306.822869 C = 5546.284903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.392 3.608 3 O -0.447 6.447 4 C -0.180 4.180 5 C -0.104 4.104 6 C -0.103 4.103 7 C -0.156 4.156 8 C 0.108 3.892 9 O -0.291 6.291 10 C 0.082 3.918 11 C 0.049 3.951 12 C -0.487 4.487 13 H 0.066 0.934 14 C 0.073 3.927 15 N -0.880 5.880 16 Si 0.888 3.112 17 H -0.279 1.279 18 H -0.283 1.283 19 H -0.269 1.269 20 C -0.190 4.190 21 C -0.200 4.200 22 C 0.115 3.885 23 F -0.112 7.112 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.138 0.862 28 H 0.134 0.866 29 H 0.147 0.853 30 H 0.030 0.970 31 H 0.117 0.883 32 H 0.265 0.735 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.169 1.279 4.586 14.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.270 3.730 3 O -0.322 6.322 4 C -0.182 4.182 5 C -0.122 4.122 6 C -0.121 4.121 7 C -0.175 4.175 8 C 0.059 3.941 9 O -0.203 6.203 10 C 0.008 3.992 11 C 0.048 3.952 12 C -0.524 4.524 13 H 0.084 0.916 14 C -0.130 4.130 15 N -0.517 5.517 16 Si 0.715 3.285 17 H -0.205 1.205 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.228 4.228 21 C -0.237 4.237 22 C 0.094 3.906 23 F -0.090 7.090 24 H 0.115 0.885 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.155 0.845 28 H 0.152 0.848 29 H 0.164 0.836 30 H 0.049 0.951 31 H 0.135 0.865 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.812 1.934 4.459 14.643 hybrid contribution 0.292 -0.029 -0.853 0.902 sum -13.520 1.905 3.606 14.122 Atomic orbital electron populations 1.22188 0.93327 1.04913 1.04707 1.22327 0.91742 0.87182 0.71781 1.90610 1.72039 1.34040 1.35502 1.20356 0.91395 0.96565 1.09919 1.21081 0.99859 0.90430 1.00865 1.20931 0.93391 0.98253 0.99510 1.21590 0.95162 0.97734 1.03006 1.19155 0.85777 0.92289 0.96879 1.86245 1.12686 1.35700 1.85703 1.22979 0.93264 0.81865 1.01042 1.18772 0.87641 0.98347 0.90399 1.20478 1.15742 1.26280 0.89865 0.91612 1.24940 0.94538 0.94007 0.99497 1.69811 1.37813 1.12602 1.31456 0.86627 0.77864 0.80168 0.83802 1.20480 1.20858 1.19379 1.23004 1.02521 0.92972 1.04256 1.22822 1.03534 0.94147 1.03226 1.17261 0.88471 0.80285 1.04578 1.91561 1.79364 1.45023 1.93086 0.88474 0.89431 0.89381 0.84454 0.84822 0.83575 0.95140 0.86531 0.92479 0.91571 0.89716 0.90240 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 9.75 36.01 0.35 -1.24 16 2 C 0.39 5.44 7.22 -30.76 -0.22 5.22 16 3 O -0.45 -8.04 16.09 5.56 0.09 -7.95 16 4 C -0.18 -2.70 5.87 -105.03 -0.62 -3.32 16 5 C -0.10 -1.19 9.36 -39.10 -0.37 -1.56 16 6 C -0.10 -1.27 10.02 -39.67 -0.40 -1.66 16 7 C -0.16 -2.53 9.05 -39.35 -0.36 -2.88 16 8 C 0.11 2.12 6.68 -39.24 -0.26 1.86 16 9 O -0.29 -6.77 9.98 -19.64 -0.20 -6.97 16 10 C 0.08 1.89 4.41 37.16 0.16 2.05 16 11 C 0.05 1.21 1.97 -155.66 -0.31 0.90 16 12 C -0.49 -13.27 8.98 -34.44 -0.31 -13.58 16 13 H 0.07 1.80 7.91 -52.49 -0.42 1.39 16 14 C 0.07 1.95 5.03 -17.82 -0.09 1.86 16 15 N -0.88 -23.42 11.14 55.43 0.62 -22.80 16 16 Si 0.89 20.96 29.60 -169.99 -5.03 15.93 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 C -0.19 -4.19 9.88 -26.73 -0.26 -4.46 16 21 C -0.20 -4.43 9.93 -26.73 -0.27 -4.69 16 22 C 0.11 2.18 7.30 -38.73 -0.28 1.90 16 23 F -0.11 -2.43 15.39 2.25 0.03 -2.39 16 24 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.09 0.52 6.46 -51.93 -0.34 0.18 16 27 H 0.14 1.00 6.35 -52.49 -0.33 0.67 16 28 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.15 2.35 6.27 -52.49 -0.33 2.02 16 30 H 0.03 0.63 7.72 -51.93 -0.40 0.23 16 31 H 0.12 2.86 4.67 -51.93 -0.24 2.61 16 32 H 0.27 6.70 8.32 -40.82 -0.34 6.36 16 33 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 34 H 0.08 1.88 8.14 -51.93 -0.42 1.45 16 35 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 36 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 313.53 15.07 4.72 4.72 Total: -1.00 -30.80 313.53 -7.13 -37.94 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.15 Total: 1.12 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -3.22 Total: -19.59 kcal Atomic # 7 Polarization: -23.42 SS G_CDS: 0.62 Total: -22.80 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.11 Total: -14.92 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.03 Total: -2.39 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.80 -7.13 -37.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871802712.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.893 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds