Wall clock time and date at job start Tue Mar 31 2020 01:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99670 * 2 1 4 4 C 1.46990 * 120.00150 * 180.02562 * 2 1 3 5 5 C 1.40004 * 120.17094 * 359.97438 * 4 2 1 6 6 C 1.37757 * 119.95231 * 180.02562 * 5 4 2 7 7 C 1.38482 * 120.30375 * 0.27444 * 6 5 4 8 8 C 1.38634 * 120.34391 * 359.44693 * 7 6 5 9 9 O 1.35970 * 119.97829 * 180.27706 * 8 7 6 10 10 C 1.42895 * 117.00297 * 354.70531 * 9 8 7 11 11 C 1.52999 * 109.47486 * 179.43591 * 10 9 8 12 12 C 1.50703 * 115.54608 * 279.86746 * 11 10 9 13 13 H 1.07994 * 120.00134 * 144.24741 * 12 11 10 14 14 C 1.37874 * 119.99849 * 324.23778 * 12 11 10 15 15 N 1.31521 * 120.00374 * 338.10224 * 14 12 11 16 16 Si 1.86801 * 119.99909 * 158.10138 * 14 12 11 17 17 H 1.48496 * 109.47284 * 90.00021 * 16 14 12 18 18 H 1.48505 * 109.46862 * 210.00335 * 16 14 12 19 19 H 1.48503 * 109.46859 * 329.99765 * 16 14 12 20 20 C 1.52999 * 117.50011 * 134.15652 * 11 10 9 21 21 C 1.52999 * 117.49764 * 65.52888 * 11 10 9 22 22 C 1.38774 * 120.03941 * 0.55297 * 8 7 6 23 23 F 1.35101 * 120.14991 * 179.70476 * 22 8 7 24 24 H 1.09000 * 109.46760 * 269.99054 * 1 2 3 25 25 H 1.08990 * 109.47340 * 29.99546 * 1 2 3 26 26 H 1.09004 * 109.46636 * 149.99925 * 1 2 3 27 27 H 1.07991 * 120.02785 * 0.04293 * 5 4 2 28 28 H 1.08000 * 119.85125 * 180.02562 * 6 5 4 29 29 H 1.08002 * 119.82505 * 179.72763 * 7 6 5 30 30 H 1.09005 * 109.47010 * 299.43402 * 10 9 8 31 31 H 1.08996 * 109.47594 * 59.42709 * 10 9 8 32 32 H 0.96995 * 120.00423 * 185.34541 * 15 14 12 33 33 H 1.08994 * 117.50334 * 359.97438 * 20 11 10 34 34 H 1.08997 * 117.49722 * 145.02567 * 20 11 10 35 35 H 1.08997 * 117.49826 * 214.97970 * 21 11 10 36 36 H 1.08998 * 117.50087 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 6 2.2420 -1.2730 -0.0006 5 6 1.5456 -2.4875 -0.0006 6 6 2.2390 -3.6779 -0.0006 7 6 3.6238 -3.6799 0.0052 8 6 4.3260 -2.4845 -0.0006 9 8 5.6856 -2.4952 -0.0006 10 6 6.3244 -3.7675 0.1229 11 6 7.8427 -3.5813 0.0893 12 6 8.4460 -3.4080 -1.2807 13 1 9.2863 -2.7442 -1.4207 14 6 7.9253 -4.0971 -2.3554 15 7 7.2249 -5.1925 -2.1574 16 14 8.2148 -3.4749 -4.0928 17 1 9.4627 -4.0731 -4.6314 18 1 7.0686 -3.8614 -4.9543 19 1 8.3430 -1.9956 -4.0738 20 6 8.6696 -4.3301 1.1365 21 6 8.4862 -2.8150 1.2467 22 6 3.6420 -1.2771 -0.0006 23 9 4.3240 -0.1108 -0.0002 24 1 -0.3633 -0.0002 1.0277 25 1 -0.3633 0.8899 -0.5137 26 1 -0.3633 -0.8900 -0.5139 27 1 0.4657 -2.4913 -0.0009 28 1 1.7002 -4.6139 -0.0010 29 1 4.1596 -4.6177 0.0096 30 1 6.0358 -4.2288 1.0674 31 1 6.0187 -4.4094 -0.7032 32 1 6.9245 -5.7196 -2.9142 33 1 8.1320 -4.9550 1.8496 34 1 9.6503 -4.6976 0.8345 35 1 9.3463 -2.1860 1.0173 36 1 7.8279 -2.4431 2.0319 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871802712.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:00 Heat of formation + Delta-G solvation = -82.768264 kcal Electronic energy + Delta-G solvation = -21418.467191 eV Core-core repulsion = 17976.080781 eV Total energy + Delta-G solvation = -3442.386410 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.90081 -41.16458 -40.30473 -38.70183 -37.42334 -34.32646 -32.75753 -31.41123 -29.93820 -28.35927 -27.45102 -24.82630 -23.46446 -22.98441 -21.45320 -20.80895 -19.14817 -18.55841 -17.99215 -17.58280 -17.28804 -16.84171 -16.73677 -16.12089 -15.87920 -15.78430 -15.65000 -15.48660 -14.97503 -14.44270 -13.81152 -13.73371 -13.33490 -13.17105 -13.03204 -12.98049 -12.86369 -12.62617 -12.53746 -12.38204 -12.17764 -11.88155 -11.43269 -11.14351 -10.84273 -10.70594 -10.09639 -10.04740 -9.20310 -8.25130 -6.23085 -0.57437 0.21520 1.31665 1.32248 1.37237 1.48229 2.13086 2.33473 2.58140 2.86919 3.04166 3.16880 3.60433 3.73601 3.84807 4.05672 4.15314 4.19406 4.30780 4.35355 4.48162 4.66799 4.71562 4.74774 4.83876 4.86802 4.92473 4.98525 5.10716 5.13953 5.20607 5.31874 5.39829 5.46615 5.66971 5.78331 6.29475 6.46150 6.48894 6.68633 7.32810 8.78325 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019256 B = 0.005275 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.773088 B = 5306.822869 C = 5546.284903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.389 3.611 3 O -0.503 6.503 4 C -0.187 4.187 5 C -0.068 4.068 6 C -0.087 4.087 7 C -0.160 4.160 8 C 0.066 3.934 9 O -0.329 6.329 10 C 0.096 3.904 11 C 0.011 3.989 12 C -0.517 4.517 13 H 0.048 0.952 14 C 0.039 3.961 15 N -0.891 5.891 16 Si 0.937 3.063 17 H -0.267 1.267 18 H -0.275 1.275 19 H -0.282 1.282 20 C -0.174 4.174 21 C -0.191 4.191 22 C 0.067 3.933 23 F -0.144 7.144 24 H 0.124 0.876 25 H 0.092 0.908 26 H 0.123 0.877 27 H 0.200 0.800 28 H 0.183 0.817 29 H 0.142 0.858 30 H 0.045 0.955 31 H 0.099 0.901 32 H 0.269 0.731 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.976 -0.193 4.756 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.270 3.730 3 O -0.381 6.381 4 C -0.189 4.189 5 C -0.086 4.086 6 C -0.104 4.104 7 C -0.179 4.179 8 C 0.019 3.981 9 O -0.243 6.243 10 C 0.023 3.977 11 C 0.010 3.990 12 C -0.554 4.554 13 H 0.067 0.933 14 C -0.163 4.163 15 N -0.528 5.528 16 Si 0.763 3.237 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.208 1.208 20 C -0.212 4.212 21 C -0.228 4.228 22 C 0.047 3.953 23 F -0.122 7.122 24 H 0.142 0.858 25 H 0.111 0.889 26 H 0.141 0.859 27 H 0.216 0.784 28 H 0.200 0.800 29 H 0.160 0.840 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.638 0.435 4.633 18.241 hybrid contribution 1.334 0.402 -0.875 1.645 sum -16.304 0.837 3.757 16.752 Atomic orbital electron populations 1.22258 0.87832 1.06937 1.06914 1.23274 0.94418 0.85713 0.69580 1.90602 1.73689 1.35640 1.38173 1.20890 0.89757 0.99104 1.09102 1.21793 1.02517 0.88205 0.96096 1.21520 0.91571 1.00759 0.96591 1.21775 0.97182 0.96076 1.02881 1.19524 0.84563 0.93994 1.00016 1.86155 1.15224 1.35609 1.87281 1.22651 0.92236 0.81940 1.00910 1.18973 0.89107 1.00807 0.90112 1.20676 1.16132 1.26568 0.92006 0.93337 1.25466 0.94627 0.94109 1.02060 1.69866 1.37916 1.12786 1.32248 0.85868 0.78413 0.78778 0.80643 1.19252 1.19982 1.20773 1.22978 1.01912 0.93082 1.03237 1.22804 1.03193 0.94437 1.02408 1.17903 0.90409 0.79257 1.07726 1.91464 1.80331 1.46596 1.93836 0.85755 0.88920 0.85882 0.78351 0.79959 0.84032 0.93647 0.88332 0.92104 0.89350 0.90155 0.90529 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 9.75 71.24 0.69 -1.39 16 2 C 0.39 10.10 7.22 27.98 0.20 10.30 16 3 O -0.50 -18.48 16.09 -3.03 -0.05 -18.53 16 4 C -0.19 -5.25 5.87 -20.13 -0.12 -5.37 16 5 C -0.07 -1.21 9.36 22.58 0.21 -1.00 16 6 C -0.09 -1.74 10.02 22.21 0.22 -1.51 16 7 C -0.16 -5.02 9.05 22.42 0.20 -4.82 16 8 C 0.07 2.69 6.68 22.49 0.15 2.84 16 9 O -0.33 -16.17 9.98 -93.21 -0.93 -17.10 16 10 C 0.10 4.59 4.41 71.98 0.32 4.91 16 11 C 0.01 0.54 1.97 -52.93 -0.10 0.43 16 12 C -0.52 -29.29 8.98 25.60 0.23 -29.06 16 13 H 0.05 2.80 7.91 -2.91 -0.02 2.78 16 14 C 0.04 2.13 5.03 84.65 0.43 2.55 16 15 N -0.89 -48.06 11.14 21.45 0.24 -47.82 16 16 Si 0.94 43.90 29.60 68.60 2.03 45.93 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 20 C -0.17 -7.75 9.88 30.60 0.30 -7.45 16 21 C -0.19 -8.67 9.93 30.60 0.30 -8.36 16 22 C 0.07 2.66 7.30 22.82 0.17 2.83 16 23 F -0.14 -6.75 15.39 44.97 0.69 -6.06 16 24 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.12 0.54 6.46 -2.38 -0.02 0.53 16 27 H 0.20 1.13 6.35 -2.92 -0.02 1.11 16 28 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 29 H 0.14 4.50 6.27 -2.91 -0.02 4.48 16 30 H 0.05 1.93 7.72 -2.38 -0.02 1.91 16 31 H 0.10 4.98 4.67 -2.39 -0.01 4.97 16 32 H 0.27 13.64 8.32 -92.71 -0.77 12.87 16 33 H 0.09 3.48 8.08 -2.39 -0.02 3.47 16 34 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 35 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 36 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -74.46 313.53 6.29 -68.17 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 1.10 Total: 10.51 kcal Atomic # 6 Polarization: -38.31 SS G_CDS: 3.21 Total: -35.10 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.24 Total: -47.82 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -0.98 Total: -35.63 kcal Atomic # 9 Polarization: -6.75 SS G_CDS: 0.69 Total: -6.06 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -74.46 6.29 -68.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871802712.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.599 kcal (2) G-P(sol) polarization free energy of solvation -74.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds