Wall clock time and date at job start Tue Mar 31 2020 01:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21314 * 119.99948 * 2 1 4 4 C 1.46661 * 120.00106 * 179.97438 * 2 1 3 5 5 C 1.40687 * 120.24038 * 86.19698 * 4 2 1 6 6 N 1.38711 * 120.19635 * 359.95878 * 5 4 2 7 7 C 1.46500 * 119.99665 * 185.41401 * 6 5 4 8 8 C 1.53008 * 109.46763 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46902 * 180.02562 * 8 7 6 10 10 H 1.07994 * 119.99653 * 359.97438 * 9 8 7 11 11 C 1.37872 * 119.99722 * 179.97438 * 9 8 7 12 12 N 1.31519 * 120.00049 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00035 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46768 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47232 * 120.00228 * 13 11 9 16 16 H 1.48502 * 109.47037 * 240.00386 * 13 11 9 17 17 C 1.38915 * 119.60730 * 179.97438 * 5 4 2 18 18 C 1.37982 * 120.09019 * 0.02562 * 17 5 4 19 19 C 1.38655 * 120.48862 * 359.97438 * 18 17 5 20 20 C 1.37670 * 120.39454 * 359.73203 * 19 18 17 21 21 N 1.48013 * 120.04696 * 180.26287 * 20 19 18 22 22 O 1.21793 * 120.00390 * 354.29039 * 21 20 19 23 23 O 1.21806 * 119.99601 * 174.29012 * 21 20 19 24 24 H 1.09003 * 109.46752 * 185.04220 * 1 2 3 25 25 H 1.09008 * 109.46789 * 305.03620 * 1 2 3 26 26 H 1.08998 * 109.46910 * 65.04014 * 1 2 3 27 27 H 0.96998 * 119.99978 * 5.41159 * 6 5 4 28 28 H 1.08995 * 109.47494 * 299.99909 * 7 6 5 29 29 H 1.09000 * 109.46929 * 60.00141 * 7 6 5 30 30 H 1.09003 * 109.47074 * 299.99996 * 8 7 6 31 31 H 1.08990 * 109.46769 * 59.99988 * 8 7 6 32 32 H 0.97007 * 119.99907 * 179.97438 * 12 11 9 33 33 H 1.08001 * 119.95537 * 180.02562 * 17 5 4 34 34 H 1.08002 * 119.75306 * 179.97438 * 18 17 5 35 35 H 1.08001 * 119.80267 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2404 -1.2701 0.0006 5 6 2.5248 -1.9246 -1.2119 6 7 2.1126 -1.3729 -2.4159 7 6 2.3055 -2.1135 -3.6651 8 6 1.7673 -1.2881 -4.8357 9 6 1.9651 -2.0502 -6.1206 10 1 2.4287 -3.0255 -6.1040 11 6 1.5543 -1.5023 -7.3173 12 7 0.9903 -0.3144 -7.3374 13 14 1.8001 -2.4467 -8.9101 14 1 2.4539 -3.7477 -8.6184 15 1 0.4826 -2.6869 -9.5515 16 1 2.6600 -1.6557 -9.8268 17 6 3.2207 -3.1267 -1.1961 18 6 3.6290 -3.6740 0.0030 19 6 3.3507 -3.0323 1.2002 20 6 2.6677 -1.8370 1.2074 21 7 2.3798 -1.1557 2.4895 22 8 2.6540 -1.7005 3.5437 23 8 1.8687 -0.0501 2.4902 24 1 -0.3633 -1.0237 0.0903 25 1 -0.3633 0.5900 0.8415 26 1 -0.3633 0.4337 -0.9317 27 1 1.6966 -0.4967 -2.4308 28 1 3.3681 -2.3053 -3.8135 29 1 1.7692 -3.0610 -3.6122 30 1 0.7046 -1.0967 -4.6871 31 1 2.3032 -0.3405 -4.8886 32 1 0.7016 0.0712 -8.1794 33 1 3.4425 -3.6337 -2.1235 34 1 4.1694 -4.6091 0.0090 35 1 3.6759 -3.4704 2.1322 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882175539.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:22 Heat of formation + Delta-G solvation = -21.957913 kcal Electronic energy + Delta-G solvation = -21064.938318 eV Core-core repulsion = 17645.108804 eV Total energy + Delta-G solvation = -3419.829514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.29421 -40.28446 -38.54469 -36.60842 -36.23833 -33.40429 -32.35367 -31.21151 -29.93985 -28.42475 -26.72385 -24.88511 -23.83764 -22.20239 -21.15830 -20.38018 -18.95201 -18.60085 -17.60288 -16.93260 -16.75186 -16.58939 -15.68438 -15.31534 -14.93778 -14.64899 -14.51466 -14.35512 -13.92850 -13.10112 -12.83486 -12.46626 -12.37241 -12.22716 -12.08660 -11.61454 -11.42701 -11.41331 -11.19761 -11.15888 -10.94452 -10.77124 -10.08567 -9.90456 -9.84864 -9.61469 -9.48747 -8.61137 -7.68292 -6.25532 -4.30792 -0.26009 0.91952 1.30450 1.39681 1.77664 3.16768 3.20717 3.23999 3.26852 3.36357 3.76945 4.26874 4.39798 4.64758 4.84178 4.90816 4.91776 5.02260 5.11812 5.33747 5.37261 5.56105 5.66562 5.80519 5.88865 5.89853 5.94969 6.04276 6.34962 6.39300 7.00033 7.32365 7.35112 7.36786 7.52624 7.58675 7.71023 8.06430 8.74635 9.35496 10.85843 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029775 B = 0.003839 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.151008 B = 7290.995421 C = 8053.772314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.410 3.590 3 O -0.430 6.430 4 C -0.195 4.195 5 C 0.263 3.737 6 N -0.718 5.718 7 C 0.117 3.883 8 C 0.012 3.988 9 C -0.528 4.528 10 H 0.060 0.940 11 C 0.061 3.939 12 N -0.890 5.890 13 Si 0.898 3.102 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.150 4.150 18 C -0.055 4.055 19 C -0.128 4.128 20 C 0.031 3.969 21 N 0.028 4.972 22 O -0.154 6.154 23 O -0.162 6.162 24 H 0.078 0.922 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.402 0.598 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.264 0.736 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 -6.478 14.235 15.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.283 3.717 3 O -0.301 6.301 4 C -0.204 4.204 5 C 0.150 3.850 6 N -0.339 5.339 7 C -0.005 4.005 8 C -0.026 4.026 9 C -0.566 4.566 10 H 0.079 0.921 11 C -0.142 4.142 12 N -0.528 5.528 13 Si 0.726 3.274 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.173 4.173 18 C -0.075 4.075 19 C -0.150 4.150 20 C -0.052 4.052 21 N 0.546 4.454 22 O -0.371 6.371 23 O -0.376 6.376 24 H 0.097 0.903 25 H 0.120 0.880 26 H 0.119 0.881 27 H 0.238 0.762 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.167 0.833 34 H 0.165 0.835 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.036 -6.178 13.229 14.742 hybrid contribution -0.155 -0.016 -0.596 0.616 sum 1.882 -6.195 12.633 14.196 Atomic orbital electron populations 1.22236 0.92637 1.04819 1.05524 1.22117 0.92029 0.86750 0.70795 1.90600 1.71999 1.33567 1.33957 1.19635 1.08696 1.01019 0.91034 1.17587 0.90935 0.91601 0.84863 1.45330 1.62928 1.21585 1.04078 1.22004 1.00546 0.95957 0.81987 1.19317 0.96924 0.95588 0.90742 1.20984 1.40907 1.03750 0.90972 0.92142 1.25007 0.94742 0.94957 0.99470 1.69961 1.40073 1.15864 1.26877 0.86438 0.78008 0.79940 0.83057 1.19587 1.20815 1.20824 1.21174 1.00556 0.95559 1.00036 1.21009 0.96975 0.99344 0.90167 1.20641 1.00380 0.93207 1.00730 1.20687 1.06784 0.96235 0.81534 1.43664 0.98201 1.00559 1.02927 1.94504 1.55313 1.67570 1.19756 1.94561 1.43607 1.05652 1.93774 0.90332 0.87974 0.88095 0.76229 0.92238 0.92095 0.95724 0.95731 0.92653 0.83332 0.83498 0.83232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.27 10.28 36.01 0.37 -1.90 16 2 C 0.41 6.16 3.00 -30.91 -0.09 6.06 16 3 O -0.43 -7.80 17.43 -10.05 -0.18 -7.98 16 4 C -0.20 -2.80 5.47 -104.91 -0.57 -3.38 16 5 C 0.26 3.61 6.66 -83.57 -0.56 3.06 16 6 N -0.72 -10.94 5.63 -58.40 -0.33 -11.27 16 7 C 0.12 2.00 4.87 -4.04 -0.02 1.98 16 8 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 9 C -0.53 -13.39 9.11 -34.44 -0.31 -13.70 16 10 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.89 -24.93 13.29 55.43 0.74 -24.20 16 13 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 14 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 C -0.15 -1.69 9.30 -39.42 -0.37 -2.06 16 18 C -0.06 -0.51 10.03 -39.52 -0.40 -0.90 16 19 C -0.13 -1.37 9.54 -39.63 -0.38 -1.75 16 20 C 0.03 0.43 6.87 -79.49 -0.55 -0.12 16 21 N 0.03 0.42 4.45 34.19 0.15 0.57 16 22 O -0.15 -2.27 18.45 -29.46 -0.54 -2.81 16 23 O -0.16 -2.69 16.16 -34.78 -0.56 -3.25 16 24 H 0.08 0.81 7.99 -51.93 -0.41 0.39 16 25 H 0.10 1.10 8.14 -51.92 -0.42 0.68 16 26 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.40 6.28 7.35 -40.82 -0.30 5.98 16 28 H 0.06 0.98 7.73 -51.93 -0.40 0.58 16 29 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.15 1.51 6.72 -52.49 -0.35 1.15 16 34 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.15 1.32 7.60 -52.49 -0.40 0.92 16 LS Contribution 314.12 15.07 4.73 4.73 Total: -1.00 -30.05 314.12 -8.07 -38.11 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -3.94 Total: 2.08 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -3.11 Total: -11.08 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.56 Total: -34.89 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -1.28 Total: -14.04 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.05 -8.07 -38.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882175539.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.157 kcal (2) G-P(sol) polarization free energy of solvation -30.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds