Wall clock time and date at job start Tue Mar 31 2020 01:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21314 * 119.99948 * 2 1 4 4 C 1.46661 * 120.00106 * 179.97438 * 2 1 3 5 5 C 1.40687 * 120.24038 * 86.19698 * 4 2 1 6 6 N 1.38711 * 120.19635 * 359.95878 * 5 4 2 7 7 C 1.46500 * 119.99665 * 185.41401 * 6 5 4 8 8 C 1.53008 * 109.46763 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46902 * 180.02562 * 8 7 6 10 10 H 1.07994 * 119.99653 * 359.97438 * 9 8 7 11 11 C 1.37872 * 119.99722 * 179.97438 * 9 8 7 12 12 N 1.31519 * 120.00049 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00035 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46768 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47232 * 120.00228 * 13 11 9 16 16 H 1.48502 * 109.47037 * 240.00386 * 13 11 9 17 17 C 1.38915 * 119.60730 * 179.97438 * 5 4 2 18 18 C 1.37982 * 120.09019 * 0.02562 * 17 5 4 19 19 C 1.38655 * 120.48862 * 359.97438 * 18 17 5 20 20 C 1.37670 * 120.39454 * 359.73203 * 19 18 17 21 21 N 1.48013 * 120.04696 * 180.26287 * 20 19 18 22 22 O 1.21793 * 120.00390 * 354.29039 * 21 20 19 23 23 O 1.21806 * 119.99601 * 174.29012 * 21 20 19 24 24 H 1.09003 * 109.46752 * 185.04220 * 1 2 3 25 25 H 1.09008 * 109.46789 * 305.03620 * 1 2 3 26 26 H 1.08998 * 109.46910 * 65.04014 * 1 2 3 27 27 H 0.96998 * 119.99978 * 5.41159 * 6 5 4 28 28 H 1.08995 * 109.47494 * 299.99909 * 7 6 5 29 29 H 1.09000 * 109.46929 * 60.00141 * 7 6 5 30 30 H 1.09003 * 109.47074 * 299.99996 * 8 7 6 31 31 H 1.08990 * 109.46769 * 59.99988 * 8 7 6 32 32 H 0.97007 * 119.99907 * 179.97438 * 12 11 9 33 33 H 1.08001 * 119.95537 * 180.02562 * 17 5 4 34 34 H 1.08002 * 119.75306 * 179.97438 * 18 17 5 35 35 H 1.08001 * 119.80267 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2404 -1.2701 0.0006 5 6 2.5248 -1.9246 -1.2119 6 7 2.1126 -1.3729 -2.4159 7 6 2.3055 -2.1135 -3.6651 8 6 1.7673 -1.2881 -4.8357 9 6 1.9651 -2.0502 -6.1206 10 1 2.4287 -3.0255 -6.1040 11 6 1.5543 -1.5023 -7.3173 12 7 0.9903 -0.3144 -7.3374 13 14 1.8001 -2.4467 -8.9101 14 1 2.4539 -3.7477 -8.6184 15 1 0.4826 -2.6869 -9.5515 16 1 2.6600 -1.6557 -9.8268 17 6 3.2207 -3.1267 -1.1961 18 6 3.6290 -3.6740 0.0030 19 6 3.3507 -3.0323 1.2002 20 6 2.6677 -1.8370 1.2074 21 7 2.3798 -1.1557 2.4895 22 8 2.6540 -1.7005 3.5437 23 8 1.8687 -0.0501 2.4902 24 1 -0.3633 -1.0237 0.0903 25 1 -0.3633 0.5900 0.8415 26 1 -0.3633 0.4337 -0.9317 27 1 1.6966 -0.4967 -2.4308 28 1 3.3681 -2.3053 -3.8135 29 1 1.7692 -3.0610 -3.6122 30 1 0.7046 -1.0967 -4.6871 31 1 2.3032 -0.3405 -4.8886 32 1 0.7016 0.0712 -8.1794 33 1 3.4425 -3.6337 -2.1235 34 1 4.1694 -4.6091 0.0090 35 1 3.6759 -3.4704 2.1322 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882175539.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:22 Heat of formation + Delta-G solvation = -38.870424 kcal Electronic energy + Delta-G solvation = -21065.671699 eV Core-core repulsion = 17645.108804 eV Total energy + Delta-G solvation = -3420.562895 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.40848 -41.36273 -39.67637 -37.75968 -37.45986 -35.19294 -33.35989 -32.63703 -31.06540 -29.73096 -27.78142 -26.55172 -24.81741 -23.59767 -22.48193 -21.48642 -20.06648 -19.68362 -18.73238 -18.56606 -17.96868 -17.76876 -16.85329 -16.46982 -16.45151 -15.94929 -15.75860 -15.57258 -15.04368 -14.28896 -14.24049 -13.75790 -13.44080 -13.21300 -13.15509 -13.05681 -12.96901 -12.78193 -12.53819 -12.47614 -12.38288 -12.29292 -11.62402 -11.40402 -11.37504 -11.04707 -10.61052 -10.51480 -8.77659 -8.25517 -6.36894 -1.33516 -0.00352 0.25384 0.35321 0.64252 1.41807 1.43447 1.55198 2.16237 2.29475 2.43143 2.75329 3.10930 3.49709 3.71746 3.87810 3.94593 4.01746 4.10494 4.32502 4.42404 4.44965 4.47918 4.67036 4.80684 4.87923 4.95263 5.06535 5.09042 5.32522 5.44825 5.52758 5.69676 5.96914 6.12599 6.20546 6.35533 6.41772 6.79984 7.34056 8.86914 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029775 B = 0.003839 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.151008 B = 7290.995421 C = 8053.772314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.408 3.592 3 O -0.476 6.476 4 C -0.216 4.216 5 C 0.248 3.752 6 N -0.729 5.729 7 C 0.139 3.861 8 C 0.015 3.985 9 C -0.538 4.538 10 H 0.075 0.925 11 C 0.002 3.998 12 N -0.933 5.933 13 Si 0.966 3.034 14 H -0.254 1.254 15 H -0.282 1.282 16 H -0.284 1.284 17 C -0.143 4.143 18 C -0.035 4.035 19 C -0.108 4.108 20 C 0.009 3.991 21 N 0.028 4.972 22 O -0.130 6.130 23 O -0.217 6.217 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.396 0.604 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.001 0.999 31 H -0.006 1.006 32 H 0.263 0.737 33 H 0.166 0.834 34 H 0.197 0.803 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.958 -10.107 14.622 18.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.285 3.715 3 O -0.351 6.351 4 C -0.224 4.224 5 C 0.138 3.862 6 N -0.351 5.351 7 C 0.017 3.983 8 C -0.023 4.023 9 C -0.576 4.576 10 H 0.093 0.907 11 C -0.197 4.197 12 N -0.573 5.573 13 Si 0.791 3.209 14 H -0.178 1.178 15 H -0.208 1.208 16 H -0.210 1.210 17 C -0.166 4.166 18 C -0.054 4.054 19 C -0.129 4.129 20 C -0.074 4.074 21 N 0.543 4.457 22 O -0.356 6.356 23 O -0.417 6.417 24 H 0.111 0.889 25 H 0.126 0.874 26 H 0.127 0.873 27 H 0.230 0.770 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.020 0.980 31 H 0.012 0.988 32 H 0.072 0.928 33 H 0.184 0.816 34 H 0.214 0.786 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.313 -9.757 13.617 17.076 hybrid contribution -0.481 0.962 -0.592 1.228 sum 2.831 -8.795 13.025 15.970 Atomic orbital electron populations 1.22275 0.90692 1.05960 1.06078 1.22668 0.93374 0.86651 0.68774 1.90568 1.73014 1.35097 1.36409 1.19617 1.09945 1.01034 0.91815 1.17747 0.92001 0.92722 0.83729 1.45083 1.64376 1.21476 1.04203 1.21577 1.00810 0.95205 0.80752 1.19160 0.95355 0.95026 0.92741 1.21508 1.39859 1.04299 0.91959 0.90733 1.25952 0.94647 0.95794 1.03290 1.70102 1.41747 1.17767 1.27652 0.85372 0.77816 0.79091 0.78616 1.17793 1.20760 1.21012 1.21555 0.98987 0.94176 1.01839 1.21549 0.95356 1.00231 0.88304 1.21167 0.97716 0.91385 1.02674 1.20925 1.08644 0.97470 0.80410 1.43920 0.97827 1.00410 1.03510 1.94455 1.53748 1.66999 1.20415 1.94580 1.46234 1.06850 1.94082 0.88860 0.87433 0.87327 0.77036 0.91248 0.90582 0.98026 0.98793 0.92778 0.81621 0.78588 0.80585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.67 10.28 71.24 0.73 -3.94 16 2 C 0.41 12.81 3.00 27.89 0.08 12.89 16 3 O -0.48 -18.45 17.43 11.76 0.20 -18.25 16 4 C -0.22 -6.10 5.47 -20.05 -0.11 -6.21 16 5 C 0.25 6.46 6.66 38.81 0.26 6.72 16 6 N -0.73 -22.05 5.63 -338.69 -1.91 -23.96 16 7 C 0.14 4.59 4.87 86.38 0.42 5.01 16 8 C 0.01 0.68 5.09 29.85 0.15 0.83 16 9 C -0.54 -27.12 9.11 25.60 0.23 -26.88 16 10 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 11 C 0.00 0.08 5.46 84.65 0.46 0.54 16 12 N -0.93 -53.57 13.29 21.45 0.28 -53.29 16 13 Si 0.97 40.89 29.54 68.60 2.03 42.91 16 14 H -0.25 -9.96 7.11 99.48 0.71 -9.26 16 15 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 16 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 17 C -0.14 -2.66 9.30 22.37 0.21 -2.45 16 18 C -0.04 -0.46 10.03 22.31 0.22 -0.23 16 19 C -0.11 -1.87 9.54 22.24 0.21 -1.65 16 20 C 0.01 0.23 6.87 36.67 0.25 0.49 16 21 N 0.03 0.83 4.45 -45.76 -0.20 0.63 16 22 O -0.13 -3.59 18.45 18.90 0.35 -3.24 16 23 O -0.22 -7.43 16.16 23.96 0.39 -7.05 16 24 H 0.09 1.92 7.99 -2.39 -0.02 1.91 16 25 H 0.11 2.45 8.14 -2.38 -0.02 2.43 16 26 H 0.11 2.42 8.14 -2.39 -0.02 2.41 16 27 H 0.40 12.91 7.35 -92.71 -0.68 12.23 16 28 H 0.07 2.15 7.73 -2.39 -0.02 2.13 16 29 H 0.08 2.28 8.12 -2.39 -0.02 2.26 16 30 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 31 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 33 H 0.17 2.56 6.72 -2.91 -0.02 2.54 16 34 H 0.20 0.73 8.06 -2.91 -0.02 0.71 16 35 H 0.18 2.15 7.60 -2.91 -0.02 2.13 16 Total: -1.00 -68.06 314.12 4.72 -63.35 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.45 Total: 13.78 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 3.13 Total: -14.88 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -1.82 Total: -76.62 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: 0.94 Total: -28.53 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.91 kcal Total: -68.06 4.72 -63.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882175539.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.476 kcal (2) G-P(sol) polarization free energy of solvation -68.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds