Wall clock time and date at job start Tue Mar 31 2020 01:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47183 * 2 1 4 4 C 1.53005 * 109.46822 * 240.00009 * 2 1 3 5 5 N 1.46494 * 109.46846 * 65.00224 * 4 2 1 6 6 C 1.34779 * 119.99761 * 179.97438 * 5 4 2 7 7 O 1.21693 * 119.99795 * 0.02562 * 6 5 4 8 8 C 1.46378 * 119.99887 * 179.97438 * 6 5 4 9 9 H 1.07992 * 120.00219 * 0.02562 * 8 6 5 10 10 C 1.40055 * 119.99455 * 180.02562 * 8 6 5 11 11 N 1.30670 * 120.00474 * 359.97438 * 10 8 6 12 12 Si 1.86801 * 119.99613 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47341 * 59.99705 * 12 10 8 14 14 H 1.48498 * 109.46997 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47125 * 299.99702 * 12 10 8 16 16 C 1.50705 * 109.46807 * 120.00200 * 2 1 3 17 17 C 1.38256 * 119.99884 * 53.94117 * 16 2 1 18 18 C 1.38211 * 119.99637 * 179.70049 * 17 16 2 19 19 C 1.38260 * 119.99956 * 0.02562 * 18 17 16 20 20 C 1.38207 * 120.00046 * 359.96467 * 19 18 17 21 21 C 1.38212 * 119.99470 * 233.66002 * 16 2 1 22 22 N 1.48017 * 120.00465 * 0.25847 * 21 16 2 23 23 O 1.21803 * 119.99706 * 320.60630 * 22 21 16 24 24 O 1.21799 * 119.99990 * 140.60180 * 22 21 16 25 25 H 1.08996 * 109.47342 * 59.99564 * 1 2 3 26 26 H 1.09000 * 109.47684 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46883 * 300.00111 * 1 2 3 28 28 H 1.08994 * 109.46536 * 185.00359 * 4 2 1 29 29 H 1.08999 * 109.46960 * 304.99801 * 4 2 1 30 30 H 0.96998 * 120.00693 * 359.97438 * 5 4 2 31 31 H 0.96996 * 120.00214 * 180.02562 * 11 10 8 32 32 H 1.07995 * 120.00242 * 359.71290 * 17 16 2 33 33 H 1.07995 * 120.00069 * 179.97438 * 18 17 16 34 34 H 1.08009 * 119.99670 * 179.97438 * 19 18 17 35 35 H 1.08004 * 119.99626 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6524 0.0354 -2.4423 6 6 1.9964 -0.4130 -3.6659 7 8 2.6284 -1.4467 -3.7796 8 6 1.6086 0.3427 -4.8580 9 1 1.0473 1.2598 -4.7572 10 6 1.9656 -0.1236 -6.1295 11 7 2.6452 -1.2330 -6.2516 12 14 1.4715 0.8411 -7.6508 13 1 2.0636 2.2016 -7.5883 14 1 1.9669 0.1414 -8.8633 15 1 -0.0085 0.9477 -7.7103 16 6 2.0323 -0.7105 1.2305 17 6 1.5982 -1.9921 1.5143 18 6 2.0636 -2.6460 2.6395 19 6 2.9629 -2.0182 3.4815 20 6 3.3969 -0.7372 3.1976 21 6 2.9313 -0.0830 2.0721 22 7 3.3965 1.2889 1.7679 23 8 3.6318 1.6110 0.6171 24 8 3.5438 2.0957 2.6684 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.1262 -0.7995 -1.2056 29 1 1.6053 -1.7198 -1.2952 30 1 1.1483 0.8591 -2.3518 31 1 2.8927 -1.5558 -7.1321 32 1 0.8956 -2.4823 0.8568 33 1 1.7243 -3.6469 2.8615 34 1 3.3262 -2.5291 4.3610 35 1 4.0997 -0.2470 3.8551 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887402973.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:59 Heat of formation + Delta-G solvation = -20.036652 kcal Electronic energy + Delta-G solvation = -21240.373224 eV Core-core repulsion = 17820.627022 eV Total energy + Delta-G solvation = -3419.746202 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.27191 -39.86105 -37.52334 -36.56510 -35.39397 -32.65553 -32.18770 -31.87586 -29.75203 -26.96939 -26.52479 -25.27861 -23.68663 -22.46682 -20.56098 -19.61610 -19.10682 -18.61670 -17.62585 -17.30086 -16.35411 -15.60366 -15.30784 -14.85192 -14.64608 -14.32197 -14.18477 -13.63131 -13.35951 -12.85792 -12.66383 -12.42517 -12.20007 -11.90472 -11.61215 -11.44329 -11.26235 -11.10346 -11.08566 -10.95488 -10.80496 -10.41499 -10.29964 -10.21547 -9.77297 -9.33231 -8.81062 -7.59433 -7.47821 -6.15219 -4.60302 -0.07158 0.72546 1.09510 1.39109 3.05427 3.19001 3.23641 3.25700 4.02705 4.16820 4.18316 4.44782 4.62574 4.66992 4.73287 4.88634 4.98284 5.10521 5.20318 5.26694 5.50983 5.60336 5.67673 5.80528 5.83246 5.86977 5.97262 6.09177 6.18062 6.40200 6.49828 6.52100 7.46869 7.63592 7.95492 8.11085 8.35981 9.05988 9.56272 10.63512 10.81950 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026386 B = 0.004120 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.901684 B = 6793.961580 C = 7254.830060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.103 0.897 4 C 0.155 3.845 5 N -0.763 5.763 6 C 0.556 3.444 7 O -0.582 6.582 8 C -0.545 4.545 9 H 0.067 0.933 10 C 0.088 3.912 11 N -0.769 5.769 12 Si 0.908 3.092 13 H -0.267 1.267 14 H -0.281 1.281 15 H -0.268 1.268 16 C -0.003 4.003 17 C -0.109 4.109 18 C -0.071 4.071 19 C -0.123 4.123 20 C -0.063 4.063 21 C -0.036 4.036 22 N 0.022 4.978 23 O -0.133 6.133 24 O -0.165 6.165 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.381 0.619 31 H 0.268 0.732 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.274 -1.111 19.055 19.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.121 0.879 4 C 0.029 3.971 5 N -0.419 5.419 6 C 0.360 3.640 7 O -0.465 6.465 8 C -0.582 4.582 9 H 0.086 0.914 10 C -0.132 4.132 11 N -0.398 5.398 12 Si 0.732 3.268 13 H -0.192 1.192 14 H -0.206 1.206 15 H -0.193 1.193 16 C -0.005 4.005 17 C -0.127 4.127 18 C -0.089 4.089 19 C -0.141 4.141 20 C -0.082 4.082 21 C -0.118 4.118 22 N 0.543 4.457 23 O -0.353 6.353 24 O -0.379 6.379 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.213 0.787 31 H 0.079 0.921 32 H 0.166 0.834 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.929 -2.695 19.015 19.427 hybrid contribution -0.261 1.217 -0.661 1.410 sum -3.191 -1.478 18.354 18.687 Atomic orbital electron populations 1.21870 0.93102 1.02627 1.02344 1.20933 0.97169 1.01478 0.91593 0.87947 1.20708 0.98958 0.94237 0.83179 1.46085 1.62755 1.27926 1.05157 1.18200 0.79224 0.85216 0.81344 1.90596 1.43873 1.26238 1.85808 1.20844 1.38009 1.09599 0.89708 0.91442 1.25699 0.93149 0.94331 0.99973 1.70011 1.27803 1.17896 1.24089 0.86439 0.79489 0.80313 0.80518 1.19228 1.20613 1.19333 1.19774 0.92345 0.94153 0.94198 1.21204 1.00804 0.92821 0.97868 1.21585 0.94166 1.00164 0.93000 1.21144 0.98363 0.93767 1.00868 1.20909 0.98582 0.95099 0.93568 1.20927 1.05590 0.84386 1.00887 1.43658 0.98473 1.02883 1.00658 1.94602 1.51515 1.83783 1.05410 1.94517 1.56134 1.46868 1.40416 0.90698 0.92018 0.93065 0.93045 0.93227 0.78747 0.92109 0.83353 0.84036 0.83817 0.83746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.81 37.16 0.33 -1.46 16 2 C -0.09 -1.38 2.17 -91.77 -0.20 -1.58 16 3 H 0.10 1.66 5.15 -51.93 -0.27 1.39 16 4 C 0.15 2.98 4.88 -4.04 -0.02 2.97 16 5 N -0.76 -17.19 5.28 -61.72 -0.33 -17.52 16 6 C 0.56 15.99 7.75 -12.98 -0.10 15.89 16 7 O -0.58 -19.05 15.02 5.19 0.08 -18.98 16 8 C -0.54 -15.53 9.54 -35.63 -0.34 -15.87 16 9 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 10 C 0.09 2.48 5.50 -17.36 -0.10 2.39 16 11 N -0.77 -23.30 11.83 55.55 0.66 -22.64 16 12 Si 0.91 20.33 29.56 -169.99 -5.02 15.31 16 13 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 15 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 16 C 0.00 -0.04 4.78 -104.62 -0.50 -0.54 16 17 C -0.11 -1.12 8.85 -39.58 -0.35 -1.47 16 18 C -0.07 -0.55 10.05 -39.58 -0.40 -0.95 16 19 C -0.12 -0.93 10.05 -39.58 -0.40 -1.32 16 20 C -0.06 -0.62 9.68 -39.59 -0.38 -1.01 16 21 C -0.04 -0.47 6.45 -79.95 -0.52 -0.99 16 22 N 0.02 0.34 4.15 33.96 0.14 0.48 16 23 O -0.13 -2.37 16.29 -29.46 -0.48 -2.85 16 24 O -0.16 -2.55 18.99 -29.46 -0.56 -3.11 16 25 H 0.07 0.98 7.18 -51.93 -0.37 0.61 16 26 H 0.06 0.70 7.07 -51.93 -0.37 0.34 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.05 0.97 7.98 -51.93 -0.41 0.55 16 30 H 0.38 7.59 7.63 -40.82 -0.31 7.28 16 31 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 32 H 0.15 1.37 7.18 -52.49 -0.38 0.99 16 33 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.14 0.63 8.06 -52.48 -0.42 0.20 16 35 H 0.14 1.21 8.04 -52.48 -0.42 0.79 16 LS Contribution 309.71 15.07 4.67 4.67 Total: -1.00 -35.98 309.71 -7.59 -43.57 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -3.77 Total: 5.00 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -2.97 Total: -3.94 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.47 Total: -39.68 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.96 Total: -24.93 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.98 -7.59 -43.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887402973.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.530 kcal (2) G-P(sol) polarization free energy of solvation -35.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds