Wall clock time and date at job start Tue Mar 31 2020 01:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47210 * 2 1 4 4 C 1.53005 * 109.47101 * 119.99802 * 2 1 3 5 5 N 1.46504 * 109.47094 * 295.00141 * 4 2 1 6 6 C 1.34776 * 119.99720 * 179.97438 * 5 4 2 7 7 O 1.21682 * 120.00260 * 0.02562 * 6 5 4 8 8 C 1.46380 * 119.99766 * 179.97438 * 6 5 4 9 9 H 1.07999 * 119.99748 * 6.35570 * 8 6 5 10 10 C 1.40045 * 119.99926 * 186.35728 * 8 6 5 11 11 N 1.30666 * 120.00183 * 6.85027 * 10 8 6 12 12 Si 1.86804 * 119.99693 * 186.85570 * 10 8 6 13 13 H 1.48502 * 109.47064 * 94.30944 * 12 10 8 14 14 H 1.48506 * 109.46824 * 214.30977 * 12 10 8 15 15 H 1.48499 * 109.47241 * 334.31027 * 12 10 8 16 16 C 1.50698 * 109.47268 * 239.99812 * 2 1 3 17 17 C 1.38264 * 119.99868 * 303.37713 * 16 2 1 18 18 C 1.38208 * 119.99713 * 179.74580 * 17 16 2 19 19 C 1.38251 * 120.00242 * 0.52584 * 18 17 16 20 20 C 1.38217 * 120.00189 * 359.74798 * 19 18 17 21 21 C 1.38206 * 119.99957 * 123.65056 * 16 2 1 22 22 N 1.48019 * 120.00171 * 0.02562 * 21 16 2 23 23 O 1.21801 * 119.99876 * 221.42361 * 22 21 16 24 24 O 1.21799 * 120.00028 * 41.42461 * 22 21 16 25 25 H 1.09002 * 109.46964 * 300.00239 * 1 2 3 26 26 H 1.08998 * 109.46947 * 60.00041 * 1 2 3 27 27 H 1.09001 * 109.47001 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47512 * 174.99831 * 4 2 1 29 29 H 1.09005 * 109.46816 * 54.99607 * 4 2 1 30 30 H 0.97003 * 119.99757 * 359.97438 * 5 4 2 31 31 H 0.97003 * 120.00118 * 179.97438 * 11 10 8 32 32 H 1.08002 * 119.99489 * 0.02562 * 17 16 2 33 33 H 1.08003 * 120.00170 * 180.30358 * 18 17 16 34 34 H 1.08000 * 120.00485 * 179.77004 * 19 18 17 35 35 H 1.08003 * 120.00477 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6525 0.0354 2.4424 6 6 1.9956 -0.4135 3.6660 7 8 2.6277 -1.4471 3.7797 8 6 1.6088 0.3428 4.8581 9 1 0.9625 1.2031 4.7656 10 6 2.0768 -0.0493 6.1185 11 7 2.9627 -1.0046 6.2184 12 14 1.4344 0.7934 7.6569 13 1 0.2995 0.0127 8.2117 14 1 2.5201 0.8745 8.6669 15 1 0.9729 2.1629 7.3151 16 6 2.0324 -0.7104 -1.2304 17 6 1.6418 -2.0121 -1.4850 18 6 2.0983 -2.6618 -2.6162 19 6 2.9543 -2.0140 -3.4875 20 6 3.3493 -0.7148 -3.2300 21 6 2.8881 -0.0628 -2.1013 22 7 3.3115 1.3284 -1.8253 23 8 3.3728 2.1378 -2.7334 24 8 3.5987 1.6637 -0.6901 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1264 -0.7995 1.2057 29 1 1.6053 -1.7198 1.2952 30 1 1.1489 0.8595 2.3517 31 1 3.2871 -1.2759 7.0914 32 1 0.9763 -2.5194 -0.8023 33 1 1.7894 -3.6769 -2.8177 34 1 3.3140 -2.5230 -4.3695 35 1 4.0182 -0.2088 -3.9104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887402974.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:01 Heat of formation + Delta-G solvation = -20.842293 kcal Electronic energy + Delta-G solvation = -21228.932687 eV Core-core repulsion = 17809.151550 eV Total energy + Delta-G solvation = -3419.781137 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.27653 -39.86420 -37.53278 -36.56525 -35.40984 -32.66289 -32.19328 -31.88432 -29.76508 -26.97679 -26.53055 -25.27383 -23.71062 -22.46508 -20.56176 -19.62760 -19.11104 -18.62882 -17.63301 -17.31082 -16.35639 -15.59553 -15.31143 -14.85771 -14.63461 -14.33903 -14.20449 -13.62758 -13.36097 -12.86705 -12.67494 -12.44364 -12.21329 -11.91803 -11.61013 -11.44555 -11.28958 -11.11877 -11.09170 -10.95402 -10.81958 -10.42966 -10.31753 -10.19065 -9.77183 -9.33649 -8.81753 -7.59842 -7.49249 -6.18937 -4.60031 -0.05984 0.72377 1.07294 1.38490 3.05174 3.16599 3.23676 3.27405 4.02034 4.16560 4.18227 4.44711 4.61268 4.66896 4.73223 4.88144 4.97606 5.09862 5.19479 5.26091 5.50878 5.59470 5.67276 5.79432 5.82874 5.86385 5.96588 6.08600 6.16989 6.39679 6.48923 6.50713 7.46683 7.62702 7.94683 8.09902 8.36046 9.05622 9.55093 10.62299 10.80228 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026380 B = 0.004104 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.153590 B = 6820.534584 C = 7259.962504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.102 0.898 4 C 0.154 3.846 5 N -0.763 5.763 6 C 0.558 3.442 7 O -0.584 6.584 8 C -0.546 4.546 9 H 0.068 0.932 10 C 0.089 3.911 11 N -0.770 5.770 12 Si 0.907 3.093 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.264 1.264 16 C -0.003 4.003 17 C -0.108 4.108 18 C -0.072 4.072 19 C -0.122 4.122 20 C -0.063 4.063 21 C -0.035 4.035 22 N 0.022 4.978 23 O -0.163 6.163 24 O -0.134 6.134 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.381 0.619 31 H 0.268 0.732 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.628 -1.455 -18.971 19.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.120 0.880 4 C 0.028 3.972 5 N -0.419 5.419 6 C 0.362 3.638 7 O -0.467 6.467 8 C -0.583 4.583 9 H 0.087 0.913 10 C -0.130 4.130 11 N -0.399 5.399 12 Si 0.732 3.268 13 H -0.198 1.198 14 H -0.205 1.205 15 H -0.189 1.189 16 C -0.005 4.005 17 C -0.126 4.126 18 C -0.090 4.090 19 C -0.141 4.141 20 C -0.082 4.082 21 C -0.117 4.117 22 N 0.543 4.457 23 O -0.378 6.378 24 O -0.353 6.353 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.213 0.787 31 H 0.079 0.921 32 H 0.166 0.834 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.236 -3.022 -18.923 19.434 hybrid contribution -0.328 1.155 0.664 1.372 sum -3.564 -1.866 -18.258 18.696 Atomic orbital electron populations 1.21864 0.93056 1.02636 1.02345 1.20922 0.97174 1.01476 0.91631 0.88005 1.20728 0.99005 0.94235 0.83204 1.46096 1.62848 1.27822 1.05149 1.18203 0.78975 0.85262 0.81367 1.90584 1.43982 1.26256 1.85892 1.20874 1.32556 1.14574 0.90308 0.91344 1.25683 0.93243 0.94066 1.00023 1.69995 1.21949 1.23202 1.24728 0.86369 0.78972 0.80251 0.81195 1.19840 1.20487 1.18859 1.19760 0.92554 0.94123 0.94092 1.21203 1.00735 0.92699 0.97986 1.21579 0.94132 1.00364 0.92895 1.21140 0.98662 0.93479 1.00802 1.20904 0.98392 0.95197 0.93733 1.20920 1.06600 0.83453 1.00729 1.43661 0.98373 1.03017 1.00603 1.94519 1.56914 1.47503 1.38904 1.94603 1.49489 1.84058 1.07193 0.90701 0.93063 0.92011 0.92990 0.93220 0.78715 0.92105 0.83354 0.84033 0.83818 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.84 37.16 0.33 -1.45 16 2 C -0.09 -1.39 2.23 -91.77 -0.20 -1.59 16 3 H 0.10 1.66 5.14 -51.93 -0.27 1.39 16 4 C 0.15 2.96 4.85 -4.04 -0.02 2.94 16 5 N -0.76 -17.18 5.28 -61.71 -0.33 -17.50 16 6 C 0.56 16.02 7.72 -12.99 -0.10 15.92 16 7 O -0.58 -19.08 15.11 5.20 0.08 -19.00 16 8 C -0.55 -15.57 9.53 -35.63 -0.34 -15.91 16 9 H 0.07 1.79 7.86 -52.49 -0.41 1.37 16 10 C 0.09 2.52 5.49 -17.37 -0.10 2.43 16 11 N -0.77 -23.31 11.90 55.55 0.66 -22.65 16 12 Si 0.91 20.33 29.56 -169.99 -5.03 15.30 16 13 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 14 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 16 C 0.00 -0.05 4.77 -104.62 -0.50 -0.54 16 17 C -0.11 -1.11 8.79 -39.58 -0.35 -1.46 16 18 C -0.07 -0.56 10.05 -39.59 -0.40 -0.95 16 19 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 20 C -0.06 -0.63 9.71 -39.58 -0.38 -1.02 16 21 C -0.04 -0.46 6.42 -79.95 -0.51 -0.98 16 22 N 0.02 0.34 4.12 33.96 0.14 0.48 16 23 O -0.16 -2.52 19.03 -29.46 -0.56 -3.08 16 24 O -0.13 -2.37 16.39 -29.46 -0.48 -2.85 16 25 H 0.07 0.98 7.18 -51.93 -0.37 0.61 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.71 7.21 -51.93 -0.37 0.33 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.05 0.96 7.77 -51.93 -0.40 0.55 16 30 H 0.38 7.60 7.63 -40.82 -0.31 7.28 16 31 H 0.27 7.35 8.29 -40.82 -0.34 7.02 16 32 H 0.15 1.38 7.16 -52.49 -0.38 1.00 16 33 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 34 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 35 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 309.85 15.07 4.67 4.67 Total: -1.00 -35.97 309.85 -7.58 -43.55 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -3.77 Total: 5.01 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -2.97 Total: -3.93 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.48 Total: -39.68 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.96 Total: -24.93 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.97 -7.58 -43.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887402974.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.711 kcal (2) G-P(sol) polarization free energy of solvation -35.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds