Wall clock time and date at job start Tue Mar 31 2020 01:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47210 * 2 1 4 4 C 1.53005 * 109.47101 * 119.99802 * 2 1 3 5 5 N 1.46504 * 109.47094 * 295.00141 * 4 2 1 6 6 C 1.34776 * 119.99720 * 179.97438 * 5 4 2 7 7 O 1.21682 * 120.00260 * 0.02562 * 6 5 4 8 8 C 1.46380 * 119.99766 * 179.97438 * 6 5 4 9 9 H 1.07999 * 119.99748 * 6.35570 * 8 6 5 10 10 C 1.40045 * 119.99926 * 186.35728 * 8 6 5 11 11 N 1.30666 * 120.00183 * 6.85027 * 10 8 6 12 12 Si 1.86804 * 119.99693 * 186.85570 * 10 8 6 13 13 H 1.48502 * 109.47064 * 94.30944 * 12 10 8 14 14 H 1.48506 * 109.46824 * 214.30977 * 12 10 8 15 15 H 1.48499 * 109.47241 * 334.31027 * 12 10 8 16 16 C 1.50698 * 109.47268 * 239.99812 * 2 1 3 17 17 C 1.38264 * 119.99868 * 303.37713 * 16 2 1 18 18 C 1.38208 * 119.99713 * 179.74580 * 17 16 2 19 19 C 1.38251 * 120.00242 * 0.52584 * 18 17 16 20 20 C 1.38217 * 120.00189 * 359.74798 * 19 18 17 21 21 C 1.38206 * 119.99957 * 123.65056 * 16 2 1 22 22 N 1.48019 * 120.00171 * 0.02562 * 21 16 2 23 23 O 1.21801 * 119.99876 * 221.42361 * 22 21 16 24 24 O 1.21799 * 120.00028 * 41.42461 * 22 21 16 25 25 H 1.09002 * 109.46964 * 300.00239 * 1 2 3 26 26 H 1.08998 * 109.46947 * 60.00041 * 1 2 3 27 27 H 1.09001 * 109.47001 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47512 * 174.99831 * 4 2 1 29 29 H 1.09005 * 109.46816 * 54.99607 * 4 2 1 30 30 H 0.97003 * 119.99757 * 359.97438 * 5 4 2 31 31 H 0.97003 * 120.00118 * 179.97438 * 11 10 8 32 32 H 1.08002 * 119.99489 * 0.02562 * 17 16 2 33 33 H 1.08003 * 120.00170 * 180.30358 * 18 17 16 34 34 H 1.08000 * 120.00485 * 179.77004 * 19 18 17 35 35 H 1.08003 * 120.00477 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6525 0.0354 2.4424 6 6 1.9956 -0.4135 3.6660 7 8 2.6277 -1.4471 3.7797 8 6 1.6088 0.3428 4.8581 9 1 0.9625 1.2031 4.7656 10 6 2.0768 -0.0493 6.1185 11 7 2.9627 -1.0046 6.2184 12 14 1.4344 0.7934 7.6569 13 1 0.2995 0.0127 8.2117 14 1 2.5201 0.8745 8.6669 15 1 0.9729 2.1629 7.3151 16 6 2.0324 -0.7104 -1.2304 17 6 1.6418 -2.0121 -1.4850 18 6 2.0983 -2.6618 -2.6162 19 6 2.9543 -2.0140 -3.4875 20 6 3.3493 -0.7148 -3.2300 21 6 2.8881 -0.0628 -2.1013 22 7 3.3115 1.3284 -1.8253 23 8 3.3728 2.1378 -2.7334 24 8 3.5987 1.6637 -0.6901 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1264 -0.7995 1.2057 29 1 1.6053 -1.7198 1.2952 30 1 1.1489 0.8595 2.3517 31 1 3.2871 -1.2759 7.0914 32 1 0.9763 -2.5194 -0.8023 33 1 1.7894 -3.6769 -2.8177 34 1 3.3140 -2.5230 -4.3695 35 1 4.0182 -0.2088 -3.9104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887402974.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:01 Heat of formation + Delta-G solvation = -45.391002 kcal Electronic energy + Delta-G solvation = -21229.997199 eV Core-core repulsion = 17809.151550 eV Total energy + Delta-G solvation = -3420.845649 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.40095 -40.80791 -39.43425 -37.82200 -36.86557 -34.69956 -33.74357 -32.99718 -30.83124 -28.87980 -27.60606 -26.85820 -24.76426 -23.45723 -21.96818 -21.41742 -20.16379 -19.78363 -19.23504 -18.74492 -17.57409 -17.10348 -16.65466 -16.19383 -16.00121 -15.70615 -15.54398 -14.91973 -14.65208 -14.34012 -14.12470 -13.56145 -13.43596 -13.19255 -13.04682 -12.87320 -12.82657 -12.66163 -12.57695 -12.35674 -12.28671 -12.13206 -11.98020 -11.55153 -10.93175 -10.55830 -10.18768 -9.88138 -9.52051 -8.32740 -6.85269 -1.11154 -0.04286 0.07748 0.35843 1.40510 1.41765 1.57866 2.24233 2.30063 2.45957 2.92270 3.29895 3.42874 3.59677 3.70628 3.89244 3.95361 3.99333 4.01332 4.13726 4.26990 4.57515 4.64711 4.74425 4.81171 4.83387 4.94698 5.04477 5.10992 5.17875 5.25493 5.32059 5.56336 5.86225 6.17843 6.25274 6.38060 6.86333 7.50765 8.46822 8.65623 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026380 B = 0.004104 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.153590 B = 6820.534584 C = 7259.962504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.081 4.081 3 H 0.084 0.916 4 C 0.161 3.839 5 N -0.751 5.751 6 C 0.540 3.460 7 O -0.634 6.634 8 C -0.575 4.575 9 H 0.087 0.913 10 C 0.030 3.970 11 N -0.823 5.823 12 Si 0.999 3.001 13 H -0.262 1.262 14 H -0.272 1.272 15 H -0.249 1.249 16 C -0.028 4.028 17 C -0.116 4.116 18 C -0.055 4.055 19 C -0.104 4.104 20 C -0.066 4.066 21 C -0.060 4.060 22 N 0.026 4.974 23 O -0.141 6.141 24 O -0.207 6.207 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.018 0.982 29 H 0.050 0.950 30 H 0.394 0.606 31 H 0.275 0.725 32 H 0.156 0.844 33 H 0.183 0.817 34 H 0.188 0.812 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.063 -2.111 -20.749 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 H 0.102 0.898 4 C 0.036 3.964 5 N -0.406 5.406 6 C 0.345 3.655 7 O -0.522 6.522 8 C -0.612 4.612 9 H 0.105 0.895 10 C -0.185 4.185 11 N -0.453 5.453 12 Si 0.819 3.181 13 H -0.187 1.187 14 H -0.197 1.197 15 H -0.172 1.172 16 C -0.030 4.030 17 C -0.135 4.135 18 C -0.072 4.072 19 C -0.122 4.122 20 C -0.085 4.085 21 C -0.142 4.142 22 N 0.543 4.457 23 O -0.367 6.367 24 O -0.411 6.411 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.228 0.772 31 H 0.085 0.915 32 H 0.173 0.827 33 H 0.200 0.800 34 H 0.206 0.794 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.677 -3.652 -20.621 21.458 hybrid contribution 0.134 1.265 0.943 1.583 sum -4.543 -2.387 -19.678 20.336 Atomic orbital electron populations 1.21840 0.91153 1.03676 1.02730 1.20651 0.98641 1.00106 0.90547 0.89816 1.20723 0.97056 0.94585 0.84053 1.45772 1.61798 1.28165 1.04819 1.18601 0.78686 0.84893 0.83339 1.90531 1.46260 1.28331 1.87093 1.21421 1.33238 1.15361 0.91137 0.89459 1.26968 0.92836 0.94491 1.04163 1.70154 1.23570 1.25262 1.26294 0.84990 0.78410 0.79359 0.75388 1.18674 1.19673 1.17201 1.19663 0.94270 0.95412 0.93633 1.21443 1.01091 0.91559 0.99377 1.22085 0.92366 1.01733 0.91046 1.21697 0.96905 0.92039 1.01562 1.21314 0.98319 0.96276 0.92611 1.21191 1.08202 0.82079 1.02699 1.44078 0.97499 1.04121 0.99986 1.94456 1.55179 1.48521 1.38536 1.94616 1.53141 1.85152 1.08160 0.91659 0.91260 0.90624 0.96357 0.93223 0.77223 0.91464 0.82656 0.79982 0.79436 0.82182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.84 71.98 0.64 -2.76 16 2 C -0.08 -2.49 2.23 -11.54 -0.03 -2.51 16 3 H 0.08 2.93 5.14 -2.39 -0.01 2.91 16 4 C 0.16 6.56 4.85 86.38 0.42 6.98 16 5 N -0.75 -35.49 5.28 -467.39 -2.47 -37.96 16 6 C 0.54 32.44 7.72 86.36 0.67 33.11 16 7 O -0.63 -43.65 15.11 -4.29 -0.06 -43.71 16 8 C -0.58 -33.51 9.53 24.83 0.24 -33.27 16 9 H 0.09 4.57 7.86 -2.91 -0.02 4.55 16 10 C 0.03 1.74 5.49 85.30 0.47 2.20 16 11 N -0.82 -51.38 11.90 21.83 0.26 -51.12 16 12 Si 1.00 41.78 29.56 68.60 2.03 43.81 16 13 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 14 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 15 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 16 C -0.03 -0.72 4.77 -19.87 -0.09 -0.82 16 17 C -0.12 -2.17 8.79 22.27 0.20 -1.97 16 18 C -0.05 -0.61 10.05 22.27 0.22 -0.39 16 19 C -0.10 -1.08 10.05 22.27 0.22 -0.86 16 20 C -0.07 -1.15 9.71 22.27 0.22 -0.93 16 21 C -0.06 -1.55 6.42 36.37 0.23 -1.32 16 22 N 0.03 0.84 4.12 -46.46 -0.19 0.65 16 23 O -0.14 -4.35 19.03 18.88 0.36 -3.99 16 24 O -0.21 -7.95 16.39 18.89 0.31 -7.64 16 25 H 0.06 1.72 7.18 -2.39 -0.02 1.70 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 1.65 7.21 -2.39 -0.02 1.63 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 2.01 7.77 -2.38 -0.02 1.99 16 30 H 0.39 16.39 7.63 -92.71 -0.71 15.68 16 31 H 0.28 15.50 8.29 -92.71 -0.77 14.74 16 32 H 0.16 2.61 7.16 -2.91 -0.02 2.59 16 33 H 0.18 0.62 8.06 -2.91 -0.02 0.60 16 34 H 0.19 0.39 8.06 -2.91 -0.02 0.37 16 35 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -84.27 309.85 4.06 -80.21 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.43 Total: 22.29 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 3.40 Total: -2.54 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -2.40 Total: -88.43 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: 0.60 Total: -55.35 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -84.27 4.06 -80.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887402974.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.822 kcal (2) G-P(sol) polarization free energy of solvation -84.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds