Wall clock time and date at job start Tue Mar 31 2020 01:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47565 * 2 1 4 4 C 1.50707 * 109.47121 * 240.00012 * 2 1 3 5 5 H 1.07996 * 120.00106 * 240.00221 * 4 2 1 6 6 C 1.37873 * 119.99745 * 59.99837 * 4 2 1 7 7 N 1.31519 * 120.00066 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99885 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47121 * 90.00202 * 8 6 4 10 10 H 1.48496 * 109.47030 * 210.00256 * 8 6 4 11 11 H 1.48501 * 109.47044 * 329.99987 * 8 6 4 12 12 C 1.50699 * 109.47302 * 120.00004 * 2 1 3 13 13 O 1.20828 * 119.99878 * 119.99934 * 12 2 1 14 14 O 1.34231 * 120.00029 * 300.00198 * 12 2 1 15 15 C 1.45198 * 116.99724 * 179.97438 * 14 12 2 16 16 C 1.50703 * 109.46817 * 179.97438 * 15 14 12 17 17 C 1.32569 * 119.99783 * 135.00440 * 16 15 14 18 18 C 1.47818 * 119.99408 * 180.02562 * 17 16 15 19 19 C 1.39565 * 120.12172 * 179.97438 * 18 17 16 20 20 C 1.37971 * 119.90294 * 180.02562 * 19 18 17 21 21 C 1.38324 * 120.16714 * 359.96988 * 20 19 18 22 22 C 1.38539 * 120.26678 * 0.05327 * 21 20 19 23 23 F 1.35093 * 119.95843 * 179.97438 * 22 21 20 24 24 C 1.38224 * 120.08841 * 359.95128 * 22 21 20 25 25 H 1.09007 * 109.47236 * 299.99728 * 1 2 3 26 26 H 1.08997 * 109.47344 * 60.00048 * 1 2 3 27 27 H 1.08999 * 109.47093 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99986 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47170 * 60.00118 * 15 14 12 30 30 H 1.09001 * 109.47612 * 299.99855 * 15 14 12 31 31 H 1.08001 * 120.00022 * 314.99542 * 16 15 14 32 32 H 1.07993 * 120.00452 * 359.97438 * 17 16 15 33 33 H 1.08000 * 120.04970 * 359.74056 * 19 18 17 34 34 H 1.08001 * 119.91369 * 180.02562 * 20 19 18 35 35 H 1.08003 * 119.86826 * 180.02562 * 21 20 19 36 36 H 1.08002 * 120.09105 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.3447 -2.1615 -4.4124 10 1 2.4872 -0.1402 -5.1120 11 1 3.6308 -1.7565 -3.7120 12 6 2.0323 -0.7104 1.2304 13 8 2.7270 -1.6928 1.1195 14 8 1.7080 -0.2518 2.4496 15 6 2.2268 -0.9864 3.5896 16 6 1.7629 -0.3292 4.8639 17 6 1.2917 -1.0691 5.8579 18 6 0.8362 -0.4243 7.1076 19 6 0.3392 -1.2007 8.1555 20 6 -0.0852 -0.5941 9.3197 21 6 -0.0188 0.7813 9.4511 22 6 0.4729 1.5587 8.4151 23 9 0.5345 2.9015 8.5499 24 6 0.9009 0.9623 7.2440 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.7088 1.1614 -3.4843 29 1 3.3163 -0.9861 3.5568 30 1 1.8626 -2.0132 3.5565 31 1 1.8144 0.7446 4.9675 32 1 1.2399 -2.1428 5.7543 33 1 0.2827 -2.2744 8.0534 34 1 -0.4694 -1.1948 10.1309 35 1 -0.3520 1.2510 10.3647 36 1 1.2846 1.5683 6.4365 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893548116.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:09 Heat of formation + Delta-G solvation = -101.781689 kcal Electronic energy + Delta-G solvation = -19864.520941 eV Core-core repulsion = 16421.310047 eV Total energy + Delta-G solvation = -3443.210894 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.12815 -39.66247 -39.31503 -36.16631 -34.59742 -33.89793 -31.01432 -30.83012 -30.35266 -26.48745 -25.21471 -23.60487 -22.96531 -22.13268 -20.00070 -19.59175 -17.86411 -16.73054 -16.56859 -16.36492 -16.00607 -15.92270 -15.82604 -15.40942 -14.61507 -14.32631 -14.09006 -13.75954 -13.15111 -12.89681 -12.84413 -12.71530 -12.29111 -12.09122 -11.62413 -11.37053 -11.25927 -11.07517 -10.80469 -10.70624 -10.59565 -10.35609 -10.07492 -10.05555 -9.19506 -9.12361 -9.05895 -8.48134 -8.41583 -6.11786 -4.17463 0.48169 0.89611 2.09747 3.26743 3.29997 3.34810 3.37229 3.43082 3.61295 3.93692 4.35658 4.39462 4.45164 4.68151 4.81672 4.94405 5.00225 5.19591 5.21590 5.41385 5.49263 5.56779 5.69987 5.79323 5.88855 6.00092 6.08739 6.38390 6.48332 6.58456 6.65304 6.85656 6.86888 7.17577 7.42147 7.72943 7.93097 8.12525 8.81115 8.91856 9.48219 10.95615 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.037172 B = 0.002726 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.081670 B =10270.358448 C =10683.879888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.058 3.942 3 H 0.065 0.935 4 C -0.513 4.513 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.466 3.534 13 O -0.517 6.517 14 O -0.363 6.363 15 C 0.087 3.913 16 C -0.116 4.116 17 C -0.125 4.125 18 C -0.017 4.017 19 C -0.122 4.122 20 C -0.090 4.090 21 C -0.160 4.160 22 C 0.102 3.898 23 F -0.140 7.140 24 C -0.153 4.153 25 H 0.024 0.976 26 H 0.096 0.904 27 H 0.031 0.969 28 H 0.264 0.736 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.338 -1.005 22.391 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.551 4.551 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.310 3.690 13 O -0.404 6.404 14 O -0.281 6.281 15 C 0.013 3.987 16 C -0.134 4.134 17 C -0.143 4.143 18 C -0.017 4.017 19 C -0.140 4.140 20 C -0.108 4.108 21 C -0.179 4.179 22 C 0.083 3.917 23 F -0.118 7.118 24 C -0.171 4.171 25 H 0.043 0.957 26 H 0.115 0.885 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.192 -1.143 22.245 22.382 hybrid contribution 0.389 -0.253 -0.686 0.828 sum -1.803 -1.396 21.559 21.679 Atomic orbital electron populations 1.21737 0.95573 1.00063 1.01783 1.18774 0.94889 0.97000 0.85458 0.91755 1.21134 1.31959 1.13248 0.88774 0.90635 1.24941 0.94912 0.95003 0.99148 1.69881 1.36531 1.22755 1.23890 0.86371 0.79442 0.79211 0.81728 1.20514 1.21121 1.19679 1.25399 0.76499 0.83234 0.83834 1.90500 1.36406 1.26774 1.86718 1.86656 1.70370 1.55827 1.15256 1.21761 0.99101 0.95083 0.82712 1.23266 0.96177 1.00804 0.93107 1.21548 1.00525 0.99753 0.92492 1.18842 0.96905 0.91897 0.94039 1.21349 0.99465 1.00315 0.92863 1.20946 0.98335 0.93648 0.97828 1.21195 1.03181 0.94550 0.98991 1.17599 1.01425 0.77187 0.95476 1.91512 1.94279 1.29806 1.96224 1.21375 1.03024 0.95244 0.97472 0.95738 0.88535 0.94988 0.92666 0.90316 0.90958 0.85759 0.85470 0.84983 0.84873 0.84839 0.84188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.90 37.15 0.33 -2.84 16 2 C 0.06 1.46 2.74 -92.92 -0.25 1.21 16 3 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 4 C -0.51 -14.37 8.37 -34.44 -0.29 -14.66 16 5 H 0.08 2.20 6.76 -52.49 -0.35 1.85 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.79 11.32 55.43 0.63 -24.17 16 8 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.47 10.86 7.25 36.01 0.26 11.12 16 13 O -0.52 -13.04 15.21 -18.75 -0.29 -13.32 16 14 O -0.36 -7.11 10.11 -39.26 -0.40 -7.51 16 15 C 0.09 1.33 5.88 36.01 0.21 1.54 16 16 C -0.12 -1.40 9.32 -36.21 -0.34 -1.74 16 17 C -0.13 -1.30 9.51 -37.57 -0.36 -1.66 16 18 C -0.02 -0.17 5.87 -105.02 -0.62 -0.78 16 19 C -0.12 -1.00 9.78 -39.18 -0.38 -1.38 16 20 C -0.09 -0.66 10.03 -39.65 -0.40 -1.05 16 21 C -0.16 -1.35 10.02 -39.44 -0.40 -1.74 16 22 C 0.10 1.06 7.29 -39.48 -0.29 0.77 16 23 F -0.14 -1.58 17.26 2.25 0.04 -1.54 16 24 C -0.15 -1.61 9.38 -39.12 -0.37 -1.98 16 25 H 0.02 0.51 8.11 -51.93 -0.42 0.08 16 26 H 0.10 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 30 H 0.07 1.07 7.87 -51.93 -0.41 0.66 16 31 H 0.12 1.42 6.04 -52.49 -0.32 1.11 16 32 H 0.13 1.13 7.92 -52.49 -0.42 0.72 16 33 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.14 1.40 6.17 -52.49 -0.32 1.08 16 LS Contribution 320.25 15.07 4.83 4.83 Total: -1.00 -30.33 320.25 -7.41 -37.74 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -4.23 Total: -0.82 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -2.98 Total: -11.60 kcal Atomic # 7 Polarization: -24.79 SS G_CDS: 0.63 Total: -24.17 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.68 Total: -20.83 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.33 -7.41 -37.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893548116.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.038 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds