Wall clock time and date at job start Tue Mar 31 2020 01:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47565 * 2 1 4 4 C 1.50707 * 109.47121 * 240.00012 * 2 1 3 5 5 H 1.07996 * 120.00106 * 240.00221 * 4 2 1 6 6 C 1.37873 * 119.99745 * 59.99837 * 4 2 1 7 7 N 1.31519 * 120.00066 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99885 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47121 * 90.00202 * 8 6 4 10 10 H 1.48496 * 109.47030 * 210.00256 * 8 6 4 11 11 H 1.48501 * 109.47044 * 329.99987 * 8 6 4 12 12 C 1.50699 * 109.47302 * 120.00004 * 2 1 3 13 13 O 1.20828 * 119.99878 * 119.99934 * 12 2 1 14 14 O 1.34231 * 120.00029 * 300.00198 * 12 2 1 15 15 C 1.45198 * 116.99724 * 179.97438 * 14 12 2 16 16 C 1.50703 * 109.46817 * 179.97438 * 15 14 12 17 17 C 1.32569 * 119.99783 * 135.00440 * 16 15 14 18 18 C 1.47818 * 119.99408 * 180.02562 * 17 16 15 19 19 C 1.39565 * 120.12172 * 179.97438 * 18 17 16 20 20 C 1.37971 * 119.90294 * 180.02562 * 19 18 17 21 21 C 1.38324 * 120.16714 * 359.96988 * 20 19 18 22 22 C 1.38539 * 120.26678 * 0.05327 * 21 20 19 23 23 F 1.35093 * 119.95843 * 179.97438 * 22 21 20 24 24 C 1.38224 * 120.08841 * 359.95128 * 22 21 20 25 25 H 1.09007 * 109.47236 * 299.99728 * 1 2 3 26 26 H 1.08997 * 109.47344 * 60.00048 * 1 2 3 27 27 H 1.08999 * 109.47093 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99986 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47170 * 60.00118 * 15 14 12 30 30 H 1.09001 * 109.47612 * 299.99855 * 15 14 12 31 31 H 1.08001 * 120.00022 * 314.99542 * 16 15 14 32 32 H 1.07993 * 120.00452 * 359.97438 * 17 16 15 33 33 H 1.08000 * 120.04970 * 359.74056 * 19 18 17 34 34 H 1.08001 * 119.91369 * 180.02562 * 20 19 18 35 35 H 1.08003 * 119.86826 * 180.02562 * 21 20 19 36 36 H 1.08002 * 120.09105 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.3447 -2.1615 -4.4124 10 1 2.4872 -0.1402 -5.1120 11 1 3.6308 -1.7565 -3.7120 12 6 2.0323 -0.7104 1.2304 13 8 2.7270 -1.6928 1.1195 14 8 1.7080 -0.2518 2.4496 15 6 2.2268 -0.9864 3.5896 16 6 1.7629 -0.3292 4.8639 17 6 1.2917 -1.0691 5.8579 18 6 0.8362 -0.4243 7.1076 19 6 0.3392 -1.2007 8.1555 20 6 -0.0852 -0.5941 9.3197 21 6 -0.0188 0.7813 9.4511 22 6 0.4729 1.5587 8.4151 23 9 0.5345 2.9015 8.5499 24 6 0.9009 0.9623 7.2440 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.7088 1.1614 -3.4843 29 1 3.3163 -0.9861 3.5568 30 1 1.8626 -2.0132 3.5565 31 1 1.8144 0.7446 4.9675 32 1 1.2399 -2.1428 5.7543 33 1 0.2827 -2.2744 8.0534 34 1 -0.4694 -1.1948 10.1309 35 1 -0.3520 1.2510 10.3647 36 1 1.2846 1.5683 6.4365 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893548116.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:09 Heat of formation + Delta-G solvation = -116.240358 kcal Electronic energy + Delta-G solvation = -19865.147916 eV Core-core repulsion = 16421.310047 eV Total energy + Delta-G solvation = -3443.837869 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.93044 -41.35663 -40.06527 -37.73099 -35.92969 -35.61672 -32.72988 -31.61424 -31.44382 -27.60469 -27.26258 -24.94226 -24.09681 -23.03417 -21.64655 -20.60755 -18.78955 -18.52292 -18.00580 -17.50911 -17.33212 -17.16909 -16.90360 -16.62995 -16.18343 -15.54839 -14.88057 -14.84613 -14.71480 -14.26164 -14.10292 -13.68987 -13.50188 -13.46027 -12.99234 -12.88240 -12.75066 -12.60567 -12.31829 -12.25715 -12.08772 -12.05619 -11.84489 -11.18117 -11.11783 -11.01811 -10.53917 -9.84767 -9.24034 -8.20503 -6.34086 -0.28394 0.20700 1.23136 1.41100 1.43097 1.43985 1.54906 2.04982 2.44595 2.76197 3.09616 3.20753 3.51132 3.70632 3.95733 4.07232 4.14454 4.18615 4.26306 4.35161 4.44443 4.50450 4.68173 4.79910 4.89522 4.99090 5.02508 5.11957 5.21015 5.31648 5.38825 5.46355 5.50443 5.66409 5.68759 5.87975 5.91171 6.09594 6.72604 7.02921 7.34959 8.86017 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.037172 B = 0.002726 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.081670 B =10270.358448 C =10683.879888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.049 3.951 3 H 0.051 0.949 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.965 3.035 9 H -0.271 1.271 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.474 3.526 13 O -0.542 6.542 14 O -0.361 6.361 15 C 0.086 3.914 16 C -0.143 4.143 17 C -0.096 4.096 18 C -0.040 4.040 19 C -0.114 4.114 20 C -0.086 4.086 21 C -0.155 4.155 22 C 0.076 3.924 23 F -0.152 7.152 24 C -0.165 4.165 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.030 0.970 28 H 0.268 0.732 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.125 0.875 32 H 0.147 0.853 33 H 0.158 0.842 34 H 0.169 0.831 35 H 0.154 0.846 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.097 -2.228 24.090 24.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.030 3.970 3 H 0.068 0.932 4 C -0.577 4.577 5 H 0.075 0.925 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.789 3.211 9 H -0.197 1.197 10 H -0.200 1.200 11 H -0.200 1.200 12 C 0.319 3.681 13 O -0.431 6.431 14 O -0.279 6.279 15 C 0.013 3.987 16 C -0.161 4.161 17 C -0.114 4.114 18 C -0.040 4.040 19 C -0.132 4.132 20 C -0.103 4.103 21 C -0.174 4.174 22 C 0.057 3.943 23 F -0.131 7.131 24 C -0.184 4.184 25 H 0.066 0.934 26 H 0.096 0.904 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.143 0.857 32 H 0.165 0.835 33 H 0.176 0.824 34 H 0.186 0.814 35 H 0.171 0.829 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.964 -2.346 23.968 24.265 hybrid contribution 0.579 0.130 -0.998 1.161 sum -2.385 -2.217 22.970 23.200 Atomic orbital electron populations 1.21564 0.94372 0.99963 1.01974 1.18692 0.95929 0.96172 0.86220 0.93165 1.21262 1.32653 1.13300 0.90473 0.92461 1.25659 0.94895 0.95638 1.01636 1.69965 1.36712 1.23379 1.24779 0.85452 0.78732 0.78422 0.78445 1.19686 1.19960 1.20015 1.24825 0.75983 0.82552 0.84707 1.90476 1.37463 1.27766 1.87401 1.86589 1.70053 1.56086 1.15166 1.22046 0.99309 0.95336 0.82024 1.23015 0.99625 1.01013 0.92478 1.21771 0.97249 1.00543 0.91798 1.18927 0.98583 0.91806 0.94657 1.21722 0.97682 1.01548 0.92251 1.21369 0.97201 0.93349 0.98403 1.21546 1.01705 0.95157 0.98945 1.17884 1.03047 0.76999 0.96394 1.91476 1.94553 1.30710 1.96322 1.21469 1.03412 0.95857 0.97655 0.93361 0.90387 0.95111 0.92240 0.90320 0.90332 0.85727 0.83540 0.82415 0.81398 0.82860 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.90 71.98 0.64 -5.11 16 2 C 0.05 2.53 2.74 -12.29 -0.03 2.50 16 3 H 0.05 2.71 8.14 -2.39 -0.02 2.69 16 4 C -0.54 -30.77 8.37 25.60 0.21 -30.55 16 5 H 0.06 3.42 6.76 -2.91 -0.02 3.40 16 6 C 0.02 1.19 5.30 84.65 0.45 1.64 16 7 N -0.91 -50.77 11.32 21.45 0.24 -50.53 16 8 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 9 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 C 0.47 22.43 7.25 71.24 0.52 22.95 16 13 O -0.54 -27.76 15.21 21.96 0.33 -27.42 16 14 O -0.36 -14.22 10.11 -51.43 -0.52 -14.74 16 15 C 0.09 2.59 5.88 71.24 0.42 3.01 16 16 C -0.14 -3.40 9.32 24.53 0.23 -3.17 16 17 C -0.10 -1.82 9.51 23.66 0.22 -1.60 16 18 C -0.04 -0.72 5.87 -20.12 -0.12 -0.84 16 19 C -0.11 -1.48 9.78 22.53 0.22 -1.26 16 20 C -0.09 -0.93 10.03 22.23 0.22 -0.71 16 21 C -0.15 -2.22 10.02 22.36 0.22 -2.00 16 22 C 0.08 1.51 7.29 22.34 0.16 1.68 16 23 F -0.15 -3.45 17.26 44.97 0.78 -2.68 16 24 C -0.17 -3.41 9.38 22.57 0.21 -3.20 16 25 H 0.05 2.00 8.11 -2.38 -0.02 1.98 16 26 H 0.08 4.01 6.07 -2.39 -0.01 3.99 16 27 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 29 H 0.08 2.34 8.13 -2.38 -0.02 2.32 16 30 H 0.08 2.25 7.87 -2.39 -0.02 2.23 16 31 H 0.13 2.91 6.04 -2.91 -0.02 2.89 16 32 H 0.15 2.18 7.92 -2.91 -0.02 2.15 16 33 H 0.16 1.22 8.06 -2.91 -0.02 1.19 16 34 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 35 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.13 2.79 6.17 -2.91 -0.02 2.77 16 Total: -1.00 -65.52 320.25 7.53 -57.99 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 1.09 Total: 8.15 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 3.58 Total: -16.68 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.24 Total: -50.53 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -0.19 Total: -42.16 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -65.52 7.53 -57.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893548116.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.253 kcal (2) G-P(sol) polarization free energy of solvation -65.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds