Wall clock time and date at job start Tue Mar 31 2020 01:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46687 * 2 1 4 4 C 1.50704 * 109.47130 * 119.99853 * 2 1 3 5 5 H 1.07997 * 119.99678 * 120.00758 * 4 2 1 6 6 C 1.37876 * 120.00132 * 299.99946 * 4 2 1 7 7 N 1.31513 * 120.00096 * 179.97438 * 6 4 2 8 8 Si 1.86808 * 119.99822 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47066 * 89.99764 * 8 6 4 10 10 H 1.48495 * 109.46856 * 209.99548 * 8 6 4 11 11 H 1.48495 * 109.46976 * 329.99373 * 8 6 4 12 12 C 1.50700 * 109.47480 * 240.00266 * 2 1 3 13 13 O 1.20826 * 119.99714 * 239.99863 * 12 2 1 14 14 O 1.34229 * 119.99986 * 59.99503 * 12 2 1 15 15 C 1.45200 * 116.99719 * 180.02562 * 14 12 2 16 16 C 1.50706 * 109.46783 * 180.02562 * 15 14 12 17 17 C 1.32562 * 119.99769 * 134.38264 * 16 15 14 18 18 C 1.47816 * 120.00091 * 8.38606 * 17 16 15 19 19 C 1.39559 * 120.13008 * 39.63061 * 18 17 16 20 20 C 1.37966 * 119.90648 * 180.02562 * 19 18 17 21 21 C 1.38327 * 120.16896 * 359.97438 * 20 19 18 22 22 C 1.38542 * 120.26359 * 359.97438 * 21 20 19 23 23 F 1.35102 * 119.96134 * 180.02562 * 22 21 20 24 24 C 1.38224 * 120.08670 * 359.76600 * 22 21 20 25 25 H 1.08998 * 109.47479 * 60.00527 * 1 2 3 26 26 H 1.09006 * 109.46687 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47284 * 299.99904 * 1 2 3 28 28 H 0.96999 * 119.99618 * 180.02562 * 7 6 4 29 29 H 1.08992 * 109.47545 * 59.99877 * 15 14 12 30 30 H 1.08999 * 109.46814 * 299.99737 * 15 14 12 31 31 H 1.07998 * 119.99741 * 314.38577 * 16 15 14 32 32 H 1.08003 * 120.00166 * 188.10275 * 17 16 15 33 33 H 1.07995 * 120.04907 * 0.02562 * 19 18 17 34 34 H 1.07995 * 119.91321 * 180.02562 * 20 19 18 35 35 H 1.08001 * 119.86951 * 180.02562 * 21 20 19 36 36 H 1.08006 * 120.08827 * 180.27735 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8596 3.5566 8 14 0.6247 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9951 3.9068 11 1 0.8470 2.1765 1.4921 12 6 2.0324 -0.7103 -1.2305 13 8 2.7271 -1.6927 -1.1196 14 8 1.7081 -0.2518 -2.4496 15 6 2.2269 -0.9863 -3.5896 16 6 1.7629 -0.3290 -4.8640 17 6 2.6208 -0.1213 -5.8530 18 6 3.9809 -0.6962 -5.7846 19 6 4.1731 -1.9825 -5.2784 20 6 5.4446 -2.5143 -5.2162 21 6 6.5291 -1.7761 -5.6547 22 6 6.3463 -0.4990 -6.1595 23 9 7.4098 0.2164 -6.5866 24 6 5.0765 0.0424 -6.2317 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.9025 -0.5283 4.4375 29 1 1.8628 -2.0131 -3.5566 30 1 3.3164 -0.9858 -3.5568 31 1 0.7316 -0.0272 -4.9713 32 1 2.3246 0.4642 -6.7108 33 1 3.3278 -2.5607 -4.9359 34 1 5.5934 -3.5098 -4.8249 35 1 7.5223 -2.1974 -5.6042 36 1 4.9334 1.0363 -6.6293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893548118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:11 Heat of formation + Delta-G solvation = -86.680054 kcal Electronic energy + Delta-G solvation = -20566.907788 eV Core-core repulsion = 17124.351750 eV Total energy + Delta-G solvation = -3442.556038 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.07103 -39.92866 -39.27393 -36.24420 -34.61763 -33.98875 -31.41088 -31.12701 -29.88209 -26.93541 -25.20361 -23.53205 -23.12511 -22.44471 -19.91372 -19.54102 -17.30670 -17.09560 -16.64276 -16.51078 -16.06144 -15.98851 -15.73211 -15.70890 -14.82458 -14.21498 -14.16199 -13.78724 -13.45872 -13.10757 -12.72105 -12.59177 -12.42945 -12.30648 -12.05709 -11.70617 -11.52384 -11.08489 -11.02277 -10.70051 -10.48695 -10.35641 -9.89597 -9.69574 -9.28461 -9.18291 -9.00440 -8.65814 -8.57084 -6.13525 -4.16276 0.63709 0.97599 1.95194 3.12995 3.21765 3.30422 3.33823 3.34895 3.54617 4.00721 4.31949 4.41338 4.57546 4.79342 4.79695 4.89296 5.12021 5.15517 5.17428 5.34661 5.56479 5.61651 5.78634 5.82213 5.84370 6.01369 6.11058 6.13657 6.25540 6.29746 6.37648 6.46793 6.66091 6.69276 7.05114 7.10362 7.46531 8.38265 8.70109 9.01616 9.43315 10.98774 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024884 B = 0.003689 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.970748 B = 7589.305849 C = 7963.268014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.025 3.975 3 H 0.064 0.936 4 C -0.518 4.518 5 H 0.094 0.906 6 C 0.075 3.925 7 N -0.891 5.891 8 Si 0.883 3.117 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.264 1.264 12 C 0.473 3.527 13 O -0.501 6.501 14 O -0.365 6.365 15 C 0.078 3.922 16 C -0.122 4.122 17 C -0.121 4.121 18 C -0.032 4.032 19 C -0.121 4.121 20 C -0.086 4.086 21 C -0.154 4.154 22 C 0.097 3.903 23 F -0.141 7.141 24 C -0.144 4.144 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.267 0.733 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.875 1.047 -21.121 21.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.006 3.994 3 H 0.081 0.919 4 C -0.556 4.556 5 H 0.112 0.888 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.713 3.287 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.189 1.189 12 C 0.316 3.684 13 O -0.387 6.387 14 O -0.284 6.284 15 C 0.005 3.995 16 C -0.140 4.140 17 C -0.138 4.138 18 C -0.032 4.032 19 C -0.139 4.139 20 C -0.104 4.104 21 C -0.172 4.172 22 C 0.078 3.922 23 F -0.120 7.120 24 C -0.163 4.163 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.157 0.744 -20.919 21.043 hybrid contribution -0.310 0.812 0.125 0.878 sum 1.847 1.556 -20.794 20.933 Atomic orbital electron populations 1.22091 0.96405 1.01735 1.00050 1.19143 0.93946 0.97677 0.88665 0.91864 1.20913 1.33014 1.14552 0.87119 0.88757 1.24913 0.95647 0.96626 0.95537 1.69866 1.44984 1.40044 0.97952 0.86921 0.80751 0.83674 0.77387 1.20229 1.22071 1.18941 1.24536 0.77081 0.83228 0.83522 1.90544 1.35446 1.26114 1.86562 1.86579 1.70697 1.55850 1.15246 1.22228 0.99263 0.95222 0.82804 1.23146 0.99731 0.98124 0.92952 1.21603 0.91117 1.00580 1.00542 1.18923 0.93159 0.93731 0.97367 1.21560 0.98066 0.95036 0.99221 1.21003 0.91653 1.00167 0.97568 1.21230 1.00804 0.93513 1.01691 1.17611 0.83609 0.90895 1.00110 1.91502 1.54984 1.77805 1.87674 1.21214 0.90646 1.01152 1.03256 0.93665 0.92371 0.92996 0.92320 0.90603 0.90097 0.85110 0.84917 0.84857 0.84542 0.84677 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.60 37.16 0.32 -2.73 16 2 C 0.03 0.60 2.33 -92.92 -0.22 0.38 16 3 H 0.06 1.47 7.20 -51.93 -0.37 1.10 16 4 C -0.52 -14.80 8.96 -34.44 -0.31 -15.11 16 5 H 0.09 3.03 7.00 -52.49 -0.37 2.66 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -27.08 13.96 55.43 0.77 -26.30 16 8 Si 0.88 21.03 24.37 -169.99 -4.14 16.89 16 9 H -0.28 -6.32 6.87 56.52 0.39 -5.93 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.26 -5.92 6.53 56.52 0.37 -5.55 16 12 C 0.47 10.61 7.25 36.01 0.26 10.88 16 13 O -0.50 -12.49 15.21 -18.75 -0.29 -12.78 16 14 O -0.37 -6.77 10.11 -39.25 -0.40 -7.16 16 15 C 0.08 1.15 4.17 36.01 0.15 1.30 16 16 C -0.12 -1.34 9.84 -36.21 -0.36 -1.70 16 17 C -0.12 -1.17 9.78 -37.57 -0.37 -1.54 16 18 C -0.03 -0.35 5.03 -105.02 -0.53 -0.87 16 19 C -0.12 -1.32 7.47 -39.19 -0.29 -1.61 16 20 C -0.09 -0.88 10.03 -39.65 -0.40 -1.28 16 21 C -0.15 -1.60 10.02 -39.44 -0.40 -1.99 16 22 C 0.10 1.10 7.29 -39.47 -0.29 0.81 16 23 F -0.14 -1.67 17.26 2.25 0.04 -1.64 16 24 C -0.14 -1.55 9.76 -39.12 -0.38 -1.93 16 25 H 0.04 0.80 8.11 -51.93 -0.42 0.38 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 28 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.08 1.07 7.70 -51.93 -0.40 0.67 16 30 H 0.08 1.26 5.40 -51.93 -0.28 0.98 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 33 H 0.13 1.36 6.34 -52.49 -0.33 1.03 16 34 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 309.16 15.07 4.66 4.66 Total: -1.00 -32.17 309.16 -6.32 -38.48 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.06 Total: 1.20 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -2.90 Total: -13.34 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.77 Total: -26.30 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.68 Total: -19.94 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.14 Total: 16.89 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.17 -6.32 -38.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893548118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.197 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds