Wall clock time and date at job start Tue Mar 31 2020 01:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46687 * 2 1 4 4 C 1.50704 * 109.47130 * 119.99853 * 2 1 3 5 5 H 1.07997 * 119.99678 * 120.00758 * 4 2 1 6 6 C 1.37876 * 120.00132 * 299.99946 * 4 2 1 7 7 N 1.31513 * 120.00096 * 179.97438 * 6 4 2 8 8 Si 1.86808 * 119.99822 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47066 * 89.99764 * 8 6 4 10 10 H 1.48495 * 109.46856 * 209.99548 * 8 6 4 11 11 H 1.48495 * 109.46976 * 329.99373 * 8 6 4 12 12 C 1.50700 * 109.47480 * 240.00266 * 2 1 3 13 13 O 1.20826 * 119.99714 * 239.99863 * 12 2 1 14 14 O 1.34229 * 119.99986 * 59.99503 * 12 2 1 15 15 C 1.45200 * 116.99719 * 180.02562 * 14 12 2 16 16 C 1.50706 * 109.46783 * 180.02562 * 15 14 12 17 17 C 1.32562 * 119.99769 * 134.38264 * 16 15 14 18 18 C 1.47816 * 120.00091 * 8.38606 * 17 16 15 19 19 C 1.39559 * 120.13008 * 39.63061 * 18 17 16 20 20 C 1.37966 * 119.90648 * 180.02562 * 19 18 17 21 21 C 1.38327 * 120.16896 * 359.97438 * 20 19 18 22 22 C 1.38542 * 120.26359 * 359.97438 * 21 20 19 23 23 F 1.35102 * 119.96134 * 180.02562 * 22 21 20 24 24 C 1.38224 * 120.08670 * 359.76600 * 22 21 20 25 25 H 1.08998 * 109.47479 * 60.00527 * 1 2 3 26 26 H 1.09006 * 109.46687 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47284 * 299.99904 * 1 2 3 28 28 H 0.96999 * 119.99618 * 180.02562 * 7 6 4 29 29 H 1.08992 * 109.47545 * 59.99877 * 15 14 12 30 30 H 1.08999 * 109.46814 * 299.99737 * 15 14 12 31 31 H 1.07998 * 119.99741 * 314.38577 * 16 15 14 32 32 H 1.08003 * 120.00166 * 188.10275 * 17 16 15 33 33 H 1.07995 * 120.04907 * 0.02562 * 19 18 17 34 34 H 1.07995 * 119.91321 * 180.02562 * 20 19 18 35 35 H 1.08001 * 119.86951 * 180.02562 * 21 20 19 36 36 H 1.08006 * 120.08827 * 180.27735 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8596 3.5566 8 14 0.6247 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9951 3.9068 11 1 0.8470 2.1765 1.4921 12 6 2.0324 -0.7103 -1.2305 13 8 2.7271 -1.6927 -1.1196 14 8 1.7081 -0.2518 -2.4496 15 6 2.2269 -0.9863 -3.5896 16 6 1.7629 -0.3290 -4.8640 17 6 2.6208 -0.1213 -5.8530 18 6 3.9809 -0.6962 -5.7846 19 6 4.1731 -1.9825 -5.2784 20 6 5.4446 -2.5143 -5.2162 21 6 6.5291 -1.7761 -5.6547 22 6 6.3463 -0.4990 -6.1595 23 9 7.4098 0.2164 -6.5866 24 6 5.0765 0.0424 -6.2317 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.9025 -0.5283 4.4375 29 1 1.8628 -2.0131 -3.5566 30 1 3.3164 -0.9858 -3.5568 31 1 0.7316 -0.0272 -4.9713 32 1 2.3246 0.4642 -6.7108 33 1 3.3278 -2.5607 -4.9359 34 1 5.5934 -3.5098 -4.8249 35 1 7.5223 -2.1974 -5.6042 36 1 4.9334 1.0363 -6.6293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893548118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:11 Heat of formation + Delta-G solvation = -105.111909 kcal Electronic energy + Delta-G solvation = -20567.707053 eV Core-core repulsion = 17124.351750 eV Total energy + Delta-G solvation = -3443.355303 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.95819 -41.46330 -40.24378 -37.73437 -35.96101 -35.63537 -33.41199 -32.02050 -30.75851 -28.06306 -27.17017 -25.15870 -23.96845 -23.47358 -21.55891 -20.49444 -19.02587 -18.28302 -18.11800 -17.59148 -17.37855 -17.21517 -17.10626 -16.65535 -16.34957 -15.61763 -15.30262 -14.82979 -14.75383 -14.34828 -14.16986 -14.09593 -13.78378 -13.41317 -13.37401 -12.95737 -12.86953 -12.59194 -12.54945 -12.22990 -11.96042 -11.73267 -11.50372 -11.28212 -11.11036 -10.82472 -10.74585 -9.85494 -9.41963 -8.31525 -6.41932 -0.19599 0.13528 1.07472 1.33218 1.39709 1.41392 1.52299 2.02319 2.32394 2.60101 3.01824 3.17537 3.58392 3.79051 3.83582 3.98491 4.05457 4.11865 4.17386 4.28863 4.34693 4.37586 4.56028 4.63175 4.77935 4.86646 4.97472 5.01183 5.02445 5.19073 5.26999 5.35573 5.39328 5.44496 5.50325 5.64538 5.85076 6.21487 6.69987 6.97642 7.23264 8.85234 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024884 B = 0.003689 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.970748 B = 7589.305849 C = 7963.268014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.018 3.982 3 H 0.077 0.923 4 C -0.533 4.533 5 H 0.037 0.963 6 C 0.016 3.984 7 N -0.945 5.945 8 Si 0.954 3.046 9 H -0.256 1.256 10 H -0.296 1.296 11 H -0.234 1.234 12 C 0.478 3.522 13 O -0.539 6.539 14 O -0.354 6.354 15 C 0.073 3.927 16 C -0.134 4.134 17 C -0.098 4.098 18 C -0.047 4.047 19 C -0.133 4.133 20 C -0.095 4.095 21 C -0.158 4.158 22 C 0.078 3.922 23 F -0.147 7.147 24 C -0.146 4.146 25 H 0.085 0.915 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.270 0.730 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.154 0.846 32 H 0.167 0.833 33 H 0.136 0.864 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.039 3.229 -23.147 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.001 4.001 3 H 0.095 0.905 4 C -0.571 4.571 5 H 0.055 0.945 6 C -0.182 4.182 7 N -0.584 5.584 8 Si 0.779 3.221 9 H -0.181 1.181 10 H -0.224 1.224 11 H -0.157 1.157 12 C 0.323 3.677 13 O -0.428 6.428 14 O -0.272 6.272 15 C 0.000 4.000 16 C -0.152 4.152 17 C -0.116 4.116 18 C -0.047 4.047 19 C -0.151 4.151 20 C -0.113 4.113 21 C -0.176 4.176 22 C 0.059 3.941 23 F -0.126 7.126 24 C -0.164 4.164 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.172 0.828 32 H 0.184 0.816 33 H 0.154 0.846 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.311 2.933 -22.996 23.184 hybrid contribution 0.412 0.011 0.658 0.776 sum 0.722 2.944 -22.338 22.543 Atomic orbital electron populations 1.22005 0.93533 1.02153 1.01958 1.19086 0.96187 0.97507 0.87357 0.90500 1.21024 1.32675 1.13430 0.89953 0.94471 1.25919 0.97136 1.00520 0.94623 1.70040 1.47019 1.42539 0.98817 0.85778 0.79120 0.79052 0.78191 1.18107 1.22361 1.15686 1.24245 0.76345 0.82448 0.84692 1.90536 1.37128 1.27768 1.87344 1.86516 1.70129 1.55754 1.14774 1.22530 0.98800 0.95748 0.82928 1.23068 1.01121 0.99583 0.91379 1.21900 0.89758 0.98979 1.00928 1.19170 0.94076 0.93863 0.97593 1.21763 0.98494 0.95537 0.99259 1.21263 0.91530 1.00999 0.97487 1.21476 1.01691 0.93352 1.01106 1.17852 0.83879 0.91401 1.00925 1.91484 1.55270 1.77961 1.87844 1.21433 0.90306 1.01898 1.02806 0.89587 0.92896 0.93018 0.92057 0.90447 0.91217 0.82836 0.81563 0.84627 0.83011 0.83142 0.82736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 8.60 71.98 0.62 -4.79 16 2 C 0.02 0.84 2.33 -12.29 -0.03 0.81 16 3 H 0.08 3.38 7.20 -2.38 -0.02 3.36 16 4 C -0.53 -31.31 8.96 25.60 0.23 -31.08 16 5 H 0.04 2.54 7.00 -2.91 -0.02 2.52 16 6 C 0.02 0.91 5.45 84.65 0.46 1.37 16 7 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 8 Si 0.95 42.22 24.37 68.60 1.67 43.90 16 9 H -0.26 -10.48 6.87 99.48 0.68 -9.80 16 10 H -0.30 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.23 -9.14 6.53 99.48 0.65 -8.49 16 12 C 0.48 21.34 7.25 71.24 0.52 21.86 16 13 O -0.54 -27.77 15.21 21.96 0.33 -27.44 16 14 O -0.35 -12.49 10.11 -51.41 -0.52 -13.01 16 15 C 0.07 2.05 4.17 71.24 0.30 2.34 16 16 C -0.13 -2.55 9.84 24.54 0.24 -2.31 16 17 C -0.10 -1.59 9.78 23.66 0.23 -1.36 16 18 C -0.05 -0.94 5.03 -20.12 -0.10 -1.04 16 19 C -0.13 -2.80 7.47 22.52 0.17 -2.63 16 20 C -0.09 -1.90 10.03 22.23 0.22 -1.68 16 21 C -0.16 -3.18 10.02 22.36 0.22 -2.96 16 22 C 0.08 1.72 7.29 22.34 0.16 1.88 16 23 F -0.15 -3.39 17.26 44.97 0.78 -2.61 16 24 C -0.15 -2.90 9.76 22.57 0.22 -2.68 16 25 H 0.09 2.64 8.11 -2.39 -0.02 2.62 16 26 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.05 2.01 3.27 -2.39 -0.01 2.00 16 28 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 29 H 0.08 2.13 7.70 -2.39 -0.02 2.11 16 30 H 0.07 2.13 5.40 -2.39 -0.01 2.12 16 31 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.14 2.71 6.34 -2.91 -0.02 2.69 16 34 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 35 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 36 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -72.80 309.16 7.04 -65.75 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.02 Total: 14.68 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 3.46 Total: -22.26 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.30 Total: -59.01 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -0.19 Total: -40.45 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.78 Total: -2.61 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.67 Total: 43.90 kcal Total: -72.80 7.04 -65.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893548118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.361 kcal (2) G-P(sol) polarization free energy of solvation -72.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds