Wall clock time and date at job start Tue Mar 31 2020 01:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47557 * 2 1 4 4 C 1.50707 * 109.46967 * 120.00051 * 2 1 3 5 5 H 1.07996 * 120.00106 * 120.00193 * 4 2 1 6 6 C 1.37873 * 119.99745 * 299.99809 * 4 2 1 7 7 N 1.31521 * 120.00117 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 120.00261 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47442 * 89.99376 * 8 6 4 10 10 H 1.48500 * 109.47150 * 209.99840 * 8 6 4 11 11 H 1.48502 * 109.46962 * 329.99405 * 8 6 4 12 12 C 1.50699 * 109.47080 * 239.99829 * 2 1 3 13 13 O 1.20828 * 119.99878 * 240.00142 * 12 2 1 14 14 O 1.34231 * 120.00029 * 60.00406 * 12 2 1 15 15 C 1.45198 * 116.99724 * 179.97438 * 14 12 2 16 16 C 1.50703 * 109.46817 * 179.97438 * 15 14 12 17 17 C 1.32569 * 119.99783 * 135.00440 * 16 15 14 18 18 C 1.47818 * 119.99408 * 180.02562 * 17 16 15 19 19 C 1.39565 * 120.12172 * 179.97438 * 18 17 16 20 20 C 1.37971 * 119.90294 * 180.02562 * 19 18 17 21 21 C 1.38324 * 120.16714 * 359.96988 * 20 19 18 22 22 C 1.38539 * 120.26678 * 0.05327 * 21 20 19 23 23 F 1.35093 * 119.95843 * 179.97438 * 22 21 20 24 24 C 1.38224 * 120.08841 * 359.95128 * 22 21 20 25 25 H 1.08999 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47016 * 300.00183 * 1 2 3 27 27 H 1.08998 * 109.46579 * 60.00559 * 1 2 3 28 28 H 0.96993 * 119.99890 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47170 * 60.00118 * 15 14 12 30 30 H 1.09001 * 109.47612 * 299.99855 * 15 14 12 31 31 H 1.08001 * 120.00022 * 314.99542 * 16 15 14 32 32 H 1.07993 * 120.00452 * 359.97438 * 17 16 15 33 33 H 1.08000 * 120.04970 * 359.74056 * 19 18 17 34 34 H 1.08001 * 119.91369 * 180.02562 * 20 19 18 35 35 H 1.08003 * 119.86826 * 180.02562 * 21 20 19 36 36 H 1.08002 * 120.09105 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2394 2.4827 7 7 2.1372 -0.8596 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8728 2.6996 10 1 0.9759 1.9951 3.9068 11 1 0.8472 2.1765 1.4920 12 6 2.0324 -0.7104 -1.2304 13 8 2.7270 -1.6929 -1.1195 14 8 1.7081 -0.2518 -2.4496 15 6 2.2278 -0.9858 -3.5896 16 6 1.7628 -0.3293 -4.8639 17 6 2.6175 -0.1318 -5.8578 18 6 2.1615 0.5127 -7.1076 19 6 3.0592 0.7224 -8.1554 20 6 2.6288 1.3248 -9.3197 21 6 1.3099 1.7207 -9.4510 22 6 0.4130 1.5163 -8.4151 23 9 -0.8735 1.9058 -8.5499 24 6 0.8326 0.9139 -7.2440 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5137 -0.8900 28 1 1.9025 -0.5284 4.4375 29 1 1.8643 -2.0129 -3.5568 30 1 3.3173 -0.9847 -3.5565 31 1 0.7332 -0.0199 -4.9675 32 1 3.6471 -0.4408 -5.7542 33 1 4.0903 0.4178 -8.0534 34 1 3.3232 1.4868 -10.1308 35 1 0.9781 2.1914 -10.3647 36 1 0.1333 0.7541 -6.4365 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893548120.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:13 Heat of formation + Delta-G solvation = -91.824679 kcal Electronic energy + Delta-G solvation = -19922.875997 eV Core-core repulsion = 16480.096872 eV Total energy + Delta-G solvation = -3442.779126 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.17611 -39.80625 -39.38130 -36.29168 -34.67977 -34.00386 -31.43262 -30.93290 -30.67817 -26.62874 -25.21089 -23.75891 -23.16235 -22.20967 -20.04774 -19.62361 -17.93123 -17.06638 -16.62017 -16.41425 -16.28054 -15.87801 -15.82089 -15.75379 -14.71223 -14.36888 -14.11904 -13.90676 -13.43661 -12.97318 -12.96641 -12.65571 -12.56255 -12.31380 -12.13214 -11.63634 -11.43929 -11.35407 -11.08083 -10.71442 -10.65959 -10.39306 -10.15723 -9.70244 -9.32208 -9.19661 -9.17698 -8.66471 -8.49161 -6.14253 -4.17195 0.42735 0.84890 2.03455 3.10357 3.21496 3.29396 3.31032 3.33869 3.49350 3.88689 4.31254 4.31809 4.36262 4.62764 4.76768 4.88449 4.94947 5.13007 5.15360 5.33744 5.42576 5.50333 5.64775 5.73542 5.78681 5.84026 5.98615 6.12936 6.27270 6.30375 6.38180 6.44068 6.53549 6.68046 7.03038 7.08600 7.45411 8.37234 8.67451 9.00757 9.42484 10.98044 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030168 B = 0.002951 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.903373 B = 9485.969181 C =10105.642149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.025 3.975 3 H 0.064 0.936 4 C -0.519 4.519 5 H 0.095 0.905 6 C 0.075 3.925 7 N -0.891 5.891 8 Si 0.883 3.117 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.264 1.264 12 C 0.474 3.526 13 O -0.502 6.502 14 O -0.364 6.364 15 C 0.089 3.911 16 C -0.118 4.118 17 C -0.123 4.123 18 C -0.018 4.018 19 C -0.121 4.121 20 C -0.089 4.089 21 C -0.160 4.160 22 C 0.102 3.898 23 F -0.140 7.140 24 C -0.152 4.152 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.267 0.733 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.360 5.185 -25.371 25.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.006 3.994 3 H 0.082 0.918 4 C -0.557 4.557 5 H 0.112 0.888 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.713 3.287 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.189 1.189 12 C 0.317 3.683 13 O -0.387 6.387 14 O -0.283 6.283 15 C 0.015 3.985 16 C -0.136 4.136 17 C -0.141 4.141 18 C -0.018 4.018 19 C -0.139 4.139 20 C -0.107 4.107 21 C -0.178 4.178 22 C 0.083 3.917 23 F -0.118 7.118 24 C -0.171 4.171 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.178 4.871 -25.157 25.652 hybrid contribution -0.785 0.719 0.144 1.074 sum -1.962 5.590 -25.013 25.705 Atomic orbital electron populations 1.22096 0.96392 1.01767 1.00081 1.19148 0.93957 0.97683 0.88609 0.91800 1.20914 1.33056 1.14565 0.87124 0.88754 1.24917 0.95640 0.96647 0.95536 1.69866 1.44971 1.40044 0.97963 0.86919 0.80763 0.83639 0.77397 1.20218 1.22067 1.18917 1.24560 0.77046 0.83204 0.83508 1.90553 1.35512 1.26077 1.86546 1.86605 1.70623 1.55834 1.15245 1.21788 0.98936 0.95409 0.82372 1.23245 1.00291 0.96959 0.93131 1.21564 0.99736 1.00311 0.92449 1.18837 0.92224 0.96674 0.94061 1.21358 0.99917 0.99795 0.92841 1.20955 0.94882 0.97067 0.97840 1.21204 0.93905 1.03747 0.98989 1.17600 0.79045 0.99597 0.95485 1.91512 1.35200 1.88887 1.96226 1.21367 0.96976 1.01297 0.97468 0.92351 0.92966 0.93658 0.92299 0.90111 0.90737 0.85766 0.85392 0.84936 0.84835 0.84814 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.60 37.16 0.32 -2.74 16 2 C 0.03 0.60 2.33 -92.92 -0.22 0.38 16 3 H 0.06 1.47 7.20 -51.93 -0.37 1.09 16 4 C -0.52 -14.78 8.96 -34.44 -0.31 -15.09 16 5 H 0.09 3.03 7.00 -52.49 -0.37 2.66 16 6 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 7 N -0.89 -27.06 13.96 55.43 0.77 -26.29 16 8 Si 0.88 21.02 24.37 -169.99 -4.14 16.87 16 9 H -0.28 -6.33 6.87 56.52 0.39 -5.94 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.26 -5.90 6.53 56.52 0.37 -5.53 16 12 C 0.47 10.52 7.25 36.01 0.26 10.78 16 13 O -0.50 -12.45 15.21 -18.75 -0.29 -12.73 16 14 O -0.36 -6.65 10.11 -39.26 -0.40 -7.04 16 15 C 0.09 1.27 5.88 36.01 0.21 1.48 16 16 C -0.12 -1.33 9.32 -36.21 -0.34 -1.67 16 17 C -0.12 -1.19 9.51 -37.57 -0.36 -1.55 16 18 C -0.02 -0.17 5.87 -105.02 -0.62 -0.78 16 19 C -0.12 -0.94 9.78 -39.18 -0.38 -1.32 16 20 C -0.09 -0.62 10.03 -39.65 -0.40 -1.02 16 21 C -0.16 -1.27 10.02 -39.44 -0.40 -1.67 16 22 C 0.10 1.01 7.29 -39.48 -0.29 0.72 16 23 F -0.14 -1.52 17.26 2.25 0.04 -1.48 16 24 C -0.15 -1.52 9.38 -39.12 -0.37 -1.88 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 27 H 0.04 0.80 8.11 -51.93 -0.42 0.38 16 28 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.08 1.13 8.13 -51.93 -0.42 0.71 16 30 H 0.07 1.03 7.87 -51.93 -0.41 0.62 16 31 H 0.12 1.31 6.04 -52.49 -0.32 0.99 16 32 H 0.13 1.06 7.92 -52.49 -0.42 0.64 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 35 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 36 H 0.14 1.30 6.17 -52.49 -0.32 0.98 16 LS Contribution 313.43 15.07 4.72 4.72 Total: -1.00 -32.12 313.43 -6.35 -38.48 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -4.09 Total: -0.21 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -2.97 Total: -12.32 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.77 Total: -26.29 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.68 Total: -19.78 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.14 Total: 16.87 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.12 -6.35 -38.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893548120.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.349 kcal (2) G-P(sol) polarization free energy of solvation -32.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds