Wall clock time and date at job start Tue Mar 31 2020 01:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47557 * 2 1 4 4 C 1.50707 * 109.46967 * 120.00051 * 2 1 3 5 5 H 1.07996 * 120.00106 * 120.00193 * 4 2 1 6 6 C 1.37873 * 119.99745 * 299.99809 * 4 2 1 7 7 N 1.31521 * 120.00117 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 120.00261 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47442 * 89.99376 * 8 6 4 10 10 H 1.48500 * 109.47150 * 209.99840 * 8 6 4 11 11 H 1.48502 * 109.46962 * 329.99405 * 8 6 4 12 12 C 1.50699 * 109.47080 * 239.99829 * 2 1 3 13 13 O 1.20828 * 119.99878 * 240.00142 * 12 2 1 14 14 O 1.34231 * 120.00029 * 60.00406 * 12 2 1 15 15 C 1.45198 * 116.99724 * 179.97438 * 14 12 2 16 16 C 1.50703 * 109.46817 * 179.97438 * 15 14 12 17 17 C 1.32569 * 119.99783 * 135.00440 * 16 15 14 18 18 C 1.47818 * 119.99408 * 180.02562 * 17 16 15 19 19 C 1.39565 * 120.12172 * 179.97438 * 18 17 16 20 20 C 1.37971 * 119.90294 * 180.02562 * 19 18 17 21 21 C 1.38324 * 120.16714 * 359.96988 * 20 19 18 22 22 C 1.38539 * 120.26678 * 0.05327 * 21 20 19 23 23 F 1.35093 * 119.95843 * 179.97438 * 22 21 20 24 24 C 1.38224 * 120.08841 * 359.95128 * 22 21 20 25 25 H 1.08999 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47016 * 300.00183 * 1 2 3 27 27 H 1.08998 * 109.46579 * 60.00559 * 1 2 3 28 28 H 0.96993 * 119.99890 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47170 * 60.00118 * 15 14 12 30 30 H 1.09001 * 109.47612 * 299.99855 * 15 14 12 31 31 H 1.08001 * 120.00022 * 314.99542 * 16 15 14 32 32 H 1.07993 * 120.00452 * 359.97438 * 17 16 15 33 33 H 1.08000 * 120.04970 * 359.74056 * 19 18 17 34 34 H 1.08001 * 119.91369 * 180.02562 * 20 19 18 35 35 H 1.08003 * 119.86826 * 180.02562 * 21 20 19 36 36 H 1.08002 * 120.09105 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2394 2.4827 7 7 2.1372 -0.8596 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8728 2.6996 10 1 0.9759 1.9951 3.9068 11 1 0.8472 2.1765 1.4920 12 6 2.0324 -0.7104 -1.2304 13 8 2.7270 -1.6929 -1.1195 14 8 1.7081 -0.2518 -2.4496 15 6 2.2278 -0.9858 -3.5896 16 6 1.7628 -0.3293 -4.8639 17 6 2.6175 -0.1318 -5.8578 18 6 2.1615 0.5127 -7.1076 19 6 3.0592 0.7224 -8.1554 20 6 2.6288 1.3248 -9.3197 21 6 1.3099 1.7207 -9.4510 22 6 0.4130 1.5163 -8.4151 23 9 -0.8735 1.9058 -8.5499 24 6 0.8326 0.9139 -7.2440 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5137 -0.8900 28 1 1.9025 -0.5284 4.4375 29 1 1.8643 -2.0129 -3.5568 30 1 3.3173 -0.9847 -3.5565 31 1 0.7332 -0.0199 -4.9675 32 1 3.6471 -0.4408 -5.7542 33 1 4.0903 0.4178 -8.0534 34 1 3.3232 1.4868 -10.1308 35 1 0.9781 2.1914 -10.3647 36 1 0.1333 0.7541 -6.4365 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893548120.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:13 Heat of formation + Delta-G solvation = -110.137460 kcal Electronic energy + Delta-G solvation = -19923.670099 eV Core-core repulsion = 16480.096872 eV Total energy + Delta-G solvation = -3443.573227 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.92538 -41.43528 -40.06483 -37.78749 -35.97280 -35.62054 -33.43358 -31.65062 -31.46999 -27.68372 -27.17985 -25.16407 -24.10840 -23.03004 -21.60281 -20.60442 -19.05378 -18.64601 -18.03123 -17.69930 -17.26981 -17.20463 -16.96196 -16.62454 -16.33082 -15.47296 -15.13184 -14.89208 -14.74151 -14.42855 -14.12048 -13.98022 -13.68128 -13.60327 -13.35372 -12.91073 -12.85757 -12.61317 -12.32432 -12.19750 -12.08284 -11.86198 -11.51258 -11.29273 -11.19763 -11.04538 -10.77664 -9.84435 -9.23842 -8.32299 -6.42705 -0.28257 0.20994 1.22173 1.32325 1.38287 1.40591 1.51549 1.98037 2.31578 2.76164 3.00982 3.20773 3.49453 3.70845 3.95175 4.04834 4.08444 4.17648 4.23393 4.32230 4.36406 4.44123 4.46719 4.54525 4.75143 4.81178 4.96246 5.02707 5.12082 5.21027 5.30931 5.35106 5.39771 5.47859 5.50751 5.66785 5.91215 6.20673 6.69369 6.95848 7.22468 8.84473 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030168 B = 0.002951 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.903373 B = 9485.969181 C =10105.642149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.018 3.982 3 H 0.080 0.920 4 C -0.533 4.533 5 H 0.038 0.962 6 C 0.016 3.984 7 N -0.945 5.945 8 Si 0.954 3.046 9 H -0.257 1.257 10 H -0.295 1.295 11 H -0.233 1.233 12 C 0.480 3.520 13 O -0.539 6.539 14 O -0.355 6.355 15 C 0.086 3.914 16 C -0.141 4.141 17 C -0.097 4.097 18 C -0.039 4.039 19 C -0.115 4.115 20 C -0.086 4.086 21 C -0.156 4.156 22 C 0.076 3.924 23 F -0.151 7.151 24 C -0.164 4.164 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.083 0.917 28 H 0.271 0.729 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.129 0.871 32 H 0.145 0.855 33 H 0.157 0.843 34 H 0.167 0.833 35 H 0.153 0.847 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.883 7.381 -28.116 29.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.001 4.001 3 H 0.097 0.903 4 C -0.571 4.571 5 H 0.056 0.944 6 C -0.182 4.182 7 N -0.584 5.584 8 Si 0.778 3.222 9 H -0.183 1.183 10 H -0.223 1.223 11 H -0.157 1.157 12 C 0.325 3.675 13 O -0.428 6.428 14 O -0.273 6.273 15 C 0.013 3.987 16 C -0.159 4.159 17 C -0.115 4.115 18 C -0.039 4.039 19 C -0.133 4.133 20 C -0.104 4.104 21 C -0.174 4.174 22 C 0.057 3.943 23 F -0.130 7.130 24 C -0.182 4.182 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.147 0.853 32 H 0.163 0.837 33 H 0.174 0.826 34 H 0.184 0.816 35 H 0.171 0.829 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.714 7.075 -27.953 28.885 hybrid contribution -0.494 -0.028 0.803 0.944 sum -2.208 7.047 -27.149 28.136 Atomic orbital electron populations 1.22014 0.93745 1.02120 1.01892 1.19087 0.96019 0.97630 0.87369 0.90288 1.21025 1.32677 1.13439 0.89920 0.94377 1.25913 0.97119 1.00510 0.94649 1.70038 1.47011 1.42528 0.98825 0.85783 0.79059 0.79097 0.78238 1.18286 1.22278 1.15655 1.24232 0.76283 0.82394 0.84634 1.90543 1.37229 1.27712 1.87336 1.86542 1.70133 1.55775 1.14826 1.22059 0.99193 0.95513 0.81922 1.23005 1.01027 0.99579 0.92285 1.21769 1.00085 0.97771 0.91862 1.18917 0.92458 0.97936 0.94613 1.21720 1.00726 0.98552 0.92320 1.21358 0.94854 0.95788 0.98400 1.21542 0.94105 1.02791 0.98993 1.17878 0.79085 1.00935 0.96398 1.91478 1.36042 1.89174 1.96325 1.21469 0.97464 1.01624 0.97663 0.92926 0.92976 0.89795 0.92028 0.90290 0.90446 0.85309 0.83741 0.82551 0.81551 0.82947 0.84531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.55 8.60 71.98 0.62 -4.93 16 2 C 0.02 0.85 2.33 -12.28 -0.03 0.82 16 3 H 0.08 3.46 7.20 -2.39 -0.02 3.44 16 4 C -0.53 -31.31 8.96 25.60 0.23 -31.08 16 5 H 0.04 2.60 7.00 -2.91 -0.02 2.58 16 6 C 0.02 0.92 5.45 84.65 0.46 1.38 16 7 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 8 Si 0.95 42.44 24.37 68.60 1.67 44.11 16 9 H -0.26 -10.68 6.87 99.48 0.68 -10.00 16 10 H -0.30 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.23 -9.18 6.53 99.48 0.65 -8.53 16 12 C 0.48 21.38 7.25 71.24 0.52 21.89 16 13 O -0.54 -27.72 15.21 21.96 0.33 -27.39 16 14 O -0.36 -12.58 10.11 -51.43 -0.52 -13.10 16 15 C 0.09 2.40 5.88 71.24 0.42 2.82 16 16 C -0.14 -3.00 9.32 24.53 0.23 -2.77 16 17 C -0.10 -1.69 9.51 23.66 0.22 -1.46 16 18 C -0.04 -0.65 5.87 -20.12 -0.12 -0.77 16 19 C -0.12 -1.39 9.78 22.53 0.22 -1.17 16 20 C -0.09 -0.87 10.03 22.23 0.22 -0.65 16 21 C -0.16 -2.07 10.02 22.36 0.22 -1.85 16 22 C 0.08 1.41 7.29 22.34 0.16 1.57 16 23 F -0.15 -3.21 17.26 44.97 0.78 -2.43 16 24 C -0.16 -3.07 9.38 22.57 0.21 -2.86 16 25 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.05 2.06 3.27 -2.39 -0.01 2.05 16 27 H 0.08 2.66 8.11 -2.39 -0.02 2.65 16 28 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 29 H 0.08 2.21 8.13 -2.38 -0.02 2.19 16 30 H 0.08 2.10 7.87 -2.39 -0.02 2.08 16 31 H 0.13 2.60 6.04 -2.91 -0.02 2.58 16 32 H 0.14 1.98 7.92 -2.91 -0.02 1.96 16 33 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 34 H 0.17 0.59 8.06 -2.91 -0.02 0.56 16 35 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 36 H 0.14 2.51 6.17 -2.91 -0.02 2.49 16 Total: -1.00 -73.07 313.43 7.17 -65.89 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 1.02 Total: 11.04 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 3.59 Total: -19.06 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.30 Total: -59.07 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -0.19 Total: -40.50 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.43 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.67 Total: 44.11 kcal Total: -73.07 7.17 -65.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893548120.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.245 kcal (2) G-P(sol) polarization free energy of solvation -73.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds