Wall clock time and date at job start Tue Mar 31 2020 01:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47393 * 2 1 4 4 C 1.50700 * 109.47013 * 239.99634 * 2 1 3 5 5 H 1.08003 * 120.00389 * 239.99701 * 4 2 1 6 6 C 1.37878 * 120.00015 * 60.00169 * 4 2 1 7 7 N 1.31519 * 119.99535 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00400 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47074 * 89.99767 * 8 6 4 10 10 H 1.48493 * 109.47295 * 209.99886 * 8 6 4 11 11 H 1.48501 * 109.47040 * 330.00067 * 8 6 4 12 12 C 1.50707 * 109.47413 * 119.99904 * 2 1 3 13 13 O 1.20822 * 120.00020 * 119.99775 * 12 2 1 14 14 O 1.34227 * 119.99689 * 300.00086 * 12 2 1 15 15 C 1.45199 * 116.99850 * 180.02562 * 14 12 2 16 16 C 1.50695 * 109.47318 * 179.97438 * 15 14 12 17 17 C 1.32562 * 120.00071 * 135.99739 * 16 15 14 18 18 C 1.47811 * 120.00187 * 8.06692 * 17 16 15 19 19 C 1.39568 * 120.13342 * 215.23842 * 18 17 16 20 20 C 1.37959 * 119.90965 * 180.24965 * 19 18 17 21 21 C 1.38327 * 120.17012 * 359.74825 * 20 19 18 22 22 C 1.38544 * 120.25823 * 359.97438 * 21 20 19 23 23 F 1.35107 * 119.95393 * 179.97438 * 22 21 20 24 24 C 1.38220 * 120.09208 * 0.02562 * 22 21 20 25 25 H 1.09006 * 109.46687 * 300.00214 * 1 2 3 26 26 H 1.08990 * 109.47169 * 60.00126 * 1 2 3 27 27 H 1.09003 * 109.47041 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99202 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47095 * 59.99702 * 15 14 12 30 30 H 1.08997 * 109.47066 * 299.99717 * 15 14 12 31 31 H 1.08001 * 120.00196 * 316.00427 * 16 15 14 32 32 H 1.08009 * 120.00118 * 188.06630 * 17 16 15 33 33 H 1.08004 * 120.04157 * 359.97438 * 19 18 17 34 34 H 1.08002 * 119.91755 * 179.72248 * 20 19 18 35 35 H 1.07999 * 119.87068 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.08501 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3212 -1.1205 -4.0080 9 1 1.3425 -2.1618 -4.4118 10 1 2.4864 -0.1416 -5.1123 11 1 3.6291 -1.7586 -3.7122 12 6 2.0324 -0.7104 1.2305 13 8 2.7270 -1.6928 1.1196 14 8 1.7081 -0.2518 2.4496 15 6 2.2278 -0.9856 3.5897 16 6 1.7638 -0.3284 4.8639 17 6 1.3120 -1.0699 5.8656 18 6 1.4277 -2.5422 5.8061 19 6 0.4266 -3.3464 6.3528 20 6 0.5418 -4.7201 6.2992 21 6 1.6444 -5.3025 5.7005 22 6 2.6396 -4.5109 5.1505 23 9 3.7142 -5.0862 4.5677 24 6 2.5352 -3.1335 5.1982 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.7081 1.1607 -3.4844 29 1 3.3173 -0.9844 3.5565 30 1 1.8644 -2.0127 3.5569 31 1 1.7993 0.7466 4.9611 32 1 0.8593 -0.5981 6.7253 33 1 -0.4350 -2.8938 6.8211 34 1 -0.2307 -5.3425 6.7262 35 1 1.7299 -6.3784 5.6617 36 1 3.3112 -2.5166 4.7698 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893548123.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:16 Heat of formation + Delta-G solvation = -93.900514 kcal Electronic energy + Delta-G solvation = -20728.301163 eV Core-core repulsion = 17285.432022 eV Total energy + Delta-G solvation = -3442.869141 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.94733 -39.82031 -39.18291 -36.15294 -34.59492 -33.87206 -30.83573 -30.67273 -30.05042 -26.83357 -25.19553 -23.40460 -22.76565 -22.45398 -19.89791 -19.50170 -17.36647 -16.71351 -16.48101 -16.32619 -16.01913 -15.90813 -15.59527 -15.37561 -14.73717 -14.23860 -14.20003 -13.43516 -13.35436 -12.89526 -12.57727 -12.49721 -12.24563 -12.01170 -11.74994 -11.51551 -11.05605 -10.95516 -10.74879 -10.68185 -10.45389 -10.30388 -10.04914 -9.78259 -9.14527 -9.03871 -8.96312 -8.49740 -8.43280 -6.09974 -4.15255 0.65542 1.01565 2.03670 3.30193 3.32562 3.36575 3.39907 3.44788 3.68343 4.07694 4.41899 4.46524 4.57626 4.81968 4.86448 4.93296 5.11904 5.23352 5.28665 5.41252 5.59727 5.65118 5.83791 5.91087 6.00647 6.07565 6.15518 6.31325 6.52894 6.67037 6.70503 6.87698 6.88790 7.21771 7.44335 7.74783 7.95275 8.14765 8.85140 8.94461 9.50283 10.97452 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022136 B = 0.004021 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.589773 B = 6961.677756 C = 7646.183155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.058 3.942 3 H 0.065 0.935 4 C -0.512 4.512 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.464 3.536 13 O -0.516 6.516 14 O -0.364 6.364 15 C 0.075 3.925 16 C -0.119 4.119 17 C -0.124 4.124 18 C -0.030 4.030 19 C -0.119 4.119 20 C -0.092 4.092 21 C -0.156 4.156 22 C 0.103 3.897 23 F -0.137 7.137 24 C -0.150 4.150 25 H 0.023 0.977 26 H 0.096 0.904 27 H 0.031 0.969 28 H 0.263 0.737 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.616 -5.575 19.271 20.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.550 4.550 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.309 3.691 13 O -0.402 6.402 14 O -0.282 6.282 15 C 0.001 3.999 16 C -0.137 4.137 17 C -0.142 4.142 18 C -0.030 4.030 19 C -0.138 4.138 20 C -0.110 4.110 21 C -0.175 4.175 22 C 0.084 3.916 23 F -0.115 7.115 24 C -0.168 4.168 25 H 0.042 0.958 26 H 0.115 0.885 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.425 -5.797 19.093 20.005 hybrid contribution 0.599 -0.632 -0.879 1.237 sum -0.826 -6.429 18.214 19.333 Atomic orbital electron populations 1.21731 0.95598 1.00039 1.01726 1.18772 0.94881 0.96970 0.85488 0.91780 1.21140 1.31888 1.13214 0.88776 0.90642 1.24935 0.94918 0.95006 0.99120 1.69885 1.36554 1.22827 1.23836 0.86376 0.79472 0.79221 0.81729 1.20518 1.21121 1.19666 1.25388 0.76596 0.83284 0.83849 1.90506 1.36353 1.26678 1.86711 1.86626 1.70303 1.56016 1.15259 1.22318 0.98729 0.95566 0.83251 1.23194 0.96830 1.00793 0.92880 1.21603 1.01369 0.90744 1.00469 1.18921 0.93572 0.93763 0.96760 1.21317 0.98628 0.93401 1.00404 1.20942 0.97032 0.94875 0.98140 1.21219 0.94549 1.00589 1.01140 1.17613 0.85515 0.91222 0.97270 1.91531 1.53197 1.84868 1.81940 1.21566 1.00234 0.93362 1.01658 0.95768 0.88543 0.95028 0.92707 0.90807 0.90157 0.85037 0.84783 0.85006 0.84869 0.84750 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.90 37.16 0.33 -2.87 16 2 C 0.06 1.49 2.74 -92.92 -0.25 1.24 16 3 H 0.06 1.69 8.14 -51.93 -0.42 1.27 16 4 C -0.51 -14.56 8.37 -34.44 -0.29 -14.85 16 5 H 0.08 2.24 6.76 -52.48 -0.35 1.89 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.96 11.32 55.43 0.63 -24.34 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.46 11.16 7.25 36.01 0.26 11.42 16 13 O -0.52 -13.46 15.21 -18.75 -0.29 -13.75 16 14 O -0.36 -7.38 10.11 -39.25 -0.40 -7.77 16 15 C 0.07 1.22 4.05 36.00 0.15 1.37 16 16 C -0.12 -1.45 9.85 -36.22 -0.36 -1.81 16 17 C -0.12 -1.29 9.81 -37.58 -0.37 -1.65 16 18 C -0.03 -0.34 5.19 -105.02 -0.54 -0.89 16 19 C -0.12 -1.15 9.78 -39.19 -0.38 -1.54 16 20 C -0.09 -0.84 10.03 -39.65 -0.40 -1.24 16 21 C -0.16 -1.67 10.02 -39.44 -0.40 -2.06 16 22 C 0.10 1.35 7.29 -39.48 -0.29 1.07 16 23 F -0.14 -1.99 17.26 2.25 0.04 -1.96 16 24 C -0.15 -1.95 7.39 -39.12 -0.29 -2.24 16 25 H 0.02 0.50 8.11 -51.93 -0.42 0.08 16 26 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.07 1.17 7.51 -51.93 -0.39 0.78 16 30 H 0.08 1.38 5.28 -51.93 -0.27 1.10 16 31 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 33 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.14 1.84 5.79 -52.49 -0.30 1.54 16 LS Contribution 315.13 15.07 4.75 4.75 Total: -1.00 -31.12 315.13 -7.36 -38.48 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -4.15 Total: 0.37 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -2.92 Total: -12.44 kcal Atomic # 7 Polarization: -24.96 SS G_CDS: 0.63 Total: -24.34 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.68 Total: -21.52 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.12 -7.36 -38.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893548123.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.419 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds