Wall clock time and date at job start Tue Mar 31 2020 01:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47393 * 2 1 4 4 C 1.50700 * 109.47013 * 239.99634 * 2 1 3 5 5 H 1.08003 * 120.00389 * 239.99701 * 4 2 1 6 6 C 1.37878 * 120.00015 * 60.00169 * 4 2 1 7 7 N 1.31519 * 119.99535 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00400 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47074 * 89.99767 * 8 6 4 10 10 H 1.48493 * 109.47295 * 209.99886 * 8 6 4 11 11 H 1.48501 * 109.47040 * 330.00067 * 8 6 4 12 12 C 1.50707 * 109.47413 * 119.99904 * 2 1 3 13 13 O 1.20822 * 120.00020 * 119.99775 * 12 2 1 14 14 O 1.34227 * 119.99689 * 300.00086 * 12 2 1 15 15 C 1.45199 * 116.99850 * 180.02562 * 14 12 2 16 16 C 1.50695 * 109.47318 * 179.97438 * 15 14 12 17 17 C 1.32562 * 120.00071 * 135.99739 * 16 15 14 18 18 C 1.47811 * 120.00187 * 8.06692 * 17 16 15 19 19 C 1.39568 * 120.13342 * 215.23842 * 18 17 16 20 20 C 1.37959 * 119.90965 * 180.24965 * 19 18 17 21 21 C 1.38327 * 120.17012 * 359.74825 * 20 19 18 22 22 C 1.38544 * 120.25823 * 359.97438 * 21 20 19 23 23 F 1.35107 * 119.95393 * 179.97438 * 22 21 20 24 24 C 1.38220 * 120.09208 * 0.02562 * 22 21 20 25 25 H 1.09006 * 109.46687 * 300.00214 * 1 2 3 26 26 H 1.08990 * 109.47169 * 60.00126 * 1 2 3 27 27 H 1.09003 * 109.47041 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99202 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47095 * 59.99702 * 15 14 12 30 30 H 1.08997 * 109.47066 * 299.99717 * 15 14 12 31 31 H 1.08001 * 120.00196 * 316.00427 * 16 15 14 32 32 H 1.08009 * 120.00118 * 188.06630 * 17 16 15 33 33 H 1.08004 * 120.04157 * 359.97438 * 19 18 17 34 34 H 1.08002 * 119.91755 * 179.72248 * 20 19 18 35 35 H 1.07999 * 119.87068 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.08501 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3212 -1.1205 -4.0080 9 1 1.3425 -2.1618 -4.4118 10 1 2.4864 -0.1416 -5.1123 11 1 3.6291 -1.7586 -3.7122 12 6 2.0324 -0.7104 1.2305 13 8 2.7270 -1.6928 1.1196 14 8 1.7081 -0.2518 2.4496 15 6 2.2278 -0.9856 3.5897 16 6 1.7638 -0.3284 4.8639 17 6 1.3120 -1.0699 5.8656 18 6 1.4277 -2.5422 5.8061 19 6 0.4266 -3.3464 6.3528 20 6 0.5418 -4.7201 6.2992 21 6 1.6444 -5.3025 5.7005 22 6 2.6396 -4.5109 5.1505 23 9 3.7142 -5.0862 4.5677 24 6 2.5352 -3.1335 5.1982 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.7081 1.1607 -3.4844 29 1 3.3173 -0.9844 3.5565 30 1 1.8644 -2.0127 3.5569 31 1 1.7993 0.7466 4.9611 32 1 0.8593 -0.5981 6.7253 33 1 -0.4350 -2.8938 6.8211 34 1 -0.2307 -5.3425 6.7262 35 1 1.7299 -6.3784 5.6617 36 1 3.3112 -2.5166 4.7698 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893548123.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:15 Heat of formation + Delta-G solvation = -109.664018 kcal Electronic energy + Delta-G solvation = -20728.984720 eV Core-core repulsion = 17285.432022 eV Total energy + Delta-G solvation = -3443.552697 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.98696 -41.44252 -40.23165 -37.73977 -35.95150 -35.71509 -32.70281 -31.66143 -31.04527 -28.03934 -27.29024 -25.00900 -23.75518 -23.56990 -21.64148 -20.53035 -18.78481 -18.25803 -18.08294 -17.59769 -17.34271 -17.09455 -17.04206 -16.68201 -16.20870 -15.74436 -15.18430 -14.90123 -14.55704 -14.41115 -13.99612 -13.74275 -13.46052 -13.36307 -13.00972 -12.96687 -12.77593 -12.62074 -12.58259 -12.32674 -12.07606 -12.01400 -11.72747 -11.13585 -11.10982 -10.81537 -10.54768 -9.87280 -9.37334 -8.21877 -6.35155 -0.21213 0.15342 1.10239 1.39029 1.41363 1.42024 1.53294 2.04647 2.43377 2.64938 3.08005 3.19609 3.57526 3.72554 3.85161 3.98020 4.08404 4.14327 4.17083 4.31121 4.37339 4.66498 4.70575 4.79484 4.87933 4.97350 5.02539 5.08324 5.21029 5.25840 5.36471 5.43873 5.46301 5.64814 5.67477 5.86531 5.88422 6.08465 6.70775 7.00530 7.33598 8.84639 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022136 B = 0.004021 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.589773 B = 6961.677756 C = 7646.183155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.050 3.950 3 H 0.054 0.946 4 C -0.541 4.541 5 H 0.053 0.947 6 C 0.024 3.976 7 N -0.907 5.907 8 Si 0.963 3.037 9 H -0.272 1.272 10 H -0.271 1.271 11 H -0.278 1.278 12 C 0.471 3.529 13 O -0.545 6.545 14 O -0.358 6.358 15 C 0.073 3.927 16 C -0.144 4.144 17 C -0.092 4.092 18 C -0.051 4.051 19 C -0.110 4.110 20 C -0.087 4.087 21 C -0.156 4.156 22 C 0.066 3.934 23 F -0.156 7.156 24 C -0.170 4.170 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.026 0.974 28 H 0.269 0.731 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.151 0.849 32 H 0.176 0.824 33 H 0.167 0.833 34 H 0.171 0.829 35 H 0.152 0.848 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.495 -5.718 20.981 22.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.031 3.969 3 H 0.071 0.929 4 C -0.579 4.579 5 H 0.071 0.929 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.788 3.212 9 H -0.197 1.197 10 H -0.196 1.196 11 H -0.203 1.203 12 C 0.316 3.684 13 O -0.435 6.435 14 O -0.276 6.276 15 C 0.000 4.000 16 C -0.162 4.162 17 C -0.109 4.109 18 C -0.051 4.051 19 C -0.128 4.128 20 C -0.104 4.104 21 C -0.175 4.175 22 C 0.047 3.953 23 F -0.135 7.135 24 C -0.188 4.188 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.169 0.831 32 H 0.193 0.807 33 H 0.184 0.816 34 H 0.189 0.811 35 H 0.170 0.830 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.319 -5.918 20.826 21.903 hybrid contribution 1.147 -0.643 -1.261 1.822 sum -2.172 -6.561 19.565 20.750 Atomic orbital electron populations 1.21555 0.94195 0.99819 1.02149 1.18707 0.96048 0.96195 0.85949 0.92860 1.21238 1.32758 1.13281 0.90600 0.92859 1.25620 0.94860 0.95634 1.01470 1.69955 1.36526 1.23276 1.24804 0.85479 0.78644 0.78505 0.78581 1.19712 1.19631 1.20292 1.24945 0.75991 0.82566 0.84864 1.90486 1.37631 1.27919 1.87443 1.86559 1.69901 1.56067 1.15054 1.22591 0.98579 0.95311 0.83508 1.23091 0.99753 1.01798 0.91522 1.21997 0.98394 0.89984 1.00563 1.19208 0.93770 0.94798 0.97324 1.21771 0.98641 0.93597 0.98792 1.21423 0.96900 0.95296 0.96807 1.21555 0.94193 1.01467 1.00264 1.18028 0.86253 0.91844 0.99132 1.91473 1.54285 1.85122 1.82581 1.21620 1.01068 0.93476 1.02673 0.93087 0.90205 0.95451 0.92163 0.91484 0.91231 0.83136 0.80691 0.81571 0.81114 0.83023 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.90 71.98 0.64 -5.10 16 2 C 0.05 2.64 2.74 -12.28 -0.03 2.60 16 3 H 0.05 2.90 8.14 -2.39 -0.02 2.88 16 4 C -0.54 -31.55 8.37 25.60 0.21 -31.33 16 5 H 0.05 3.29 6.76 -2.91 -0.02 3.27 16 6 C 0.02 1.35 5.30 84.65 0.45 1.80 16 7 N -0.91 -50.75 11.32 21.45 0.24 -50.51 16 8 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 C 0.47 23.26 7.25 71.24 0.52 23.78 16 13 O -0.55 -29.67 15.21 21.98 0.33 -29.34 16 14 O -0.36 -14.67 10.11 -51.39 -0.52 -15.19 16 15 C 0.07 2.42 4.05 71.23 0.29 2.71 16 16 C -0.14 -3.29 9.85 24.53 0.24 -3.05 16 17 C -0.09 -1.64 9.81 23.65 0.23 -1.40 16 18 C -0.05 -1.07 5.19 -20.12 -0.10 -1.17 16 19 C -0.11 -1.71 9.78 22.52 0.22 -1.49 16 20 C -0.09 -1.28 10.03 22.22 0.22 -1.06 16 21 C -0.16 -3.12 10.02 22.36 0.22 -2.89 16 22 C 0.07 1.79 7.29 22.34 0.16 1.95 16 23 F -0.16 -4.85 17.26 44.97 0.78 -4.07 16 24 C -0.17 -4.51 7.39 22.57 0.17 -4.34 16 25 H 0.05 2.12 8.11 -2.38 -0.02 2.10 16 26 H 0.08 4.11 6.07 -2.39 -0.01 4.10 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 29 H 0.07 2.26 7.51 -2.39 -0.02 2.24 16 30 H 0.07 2.47 5.28 -2.39 -0.01 2.45 16 31 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 32 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 34 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.12 3.55 5.79 -2.91 -0.02 3.53 16 Total: -1.00 -69.22 315.13 7.39 -61.82 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.09 Total: 9.68 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 3.44 Total: -19.00 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.24 Total: -50.51 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -0.19 Total: -44.53 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.78 Total: -4.07 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -69.22 7.39 -61.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893548123.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.841 kcal (2) G-P(sol) polarization free energy of solvation -69.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds